Phyre Home Retrieve Phyre Job Id
Emailmdejesus@rockefeller.edu
DescriptionRVBD2920c_(amt)_3231083_3232516
DateThu Aug 8 16:20:07 BST 2019
Unique Job ID5174152bd5320a4b
SequenceVDQFPIMGVP ... Download FASTA
Job Typenormal
Job Expiry

Summary 

Top model
Image coloured by rainbow N → C terminus
Model dimensions (Å):X:46.780 Y:54.880 Z:71.235
Model (left) based on template c5aezA_
Top template information
PDB header:membrane protein
Chain: A: PDB Molecule:mep2;
PDBTitle: crystal structure of candida albicans mep2
Confidence and coverage
Confidence:100.0% Coverage: 90%
428 residues ( 90% of your sequence) have been modelled with 100.0% confidence by the single highest scoring template.
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Sequence analysis 

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Secondary structure and disorder prediction [Show] 

Domain analysis [Show] 

Detailed template information [Hide] 

 

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Template Alignment Coverage3D Model Confidence
% i.d. Template Information
1c5aezA_



100.0 33
PDB header:membrane protein
Chain: A: PDB Molecule:mep2;
PDBTitle: crystal structure of candida albicans mep2
2c5aexB_



100.0 35
PDB header:membrane protein
Chain: B: PDB Molecule:ammonium transporter mep2;
PDBTitle: crystal structure of saccharomyces cerevisiae mep2
3c2b2hA_



100.0 43
PDB header:transport protein
Chain: A: PDB Molecule:ammonium transporter;
PDBTitle: ammonium transporter amt-1 from a. fulgidus (as)
4c2nuuF_



100.0 46
PDB header:transport protein/signaling protein
Chain: F: PDB Molecule:ammonia channel;
PDBTitle: regulating the escherichia coli ammonia channel: the crystal structure2 of the amtb-glnk complex
5c6eu6A_



100.0 29
PDB header:membrane protein
Chain: A: PDB Molecule:ammonium transporter;
PDBTitle: sensor amt protein
6c5aexJ_



100.0 34
PDB header:membrane protein
Chain: J: PDB Molecule:ammonium transporter mep2;
PDBTitle: crystal structure of saccharomyces cerevisiae mep2
7d1u7ga_



100.0 43
Fold:Ammonium transporter
Superfamily:Ammonium transporter
Family:Ammonium transporter
8c3c1iA_



100.0 46
PDB header:transport protein
Chain: A: PDB Molecule:ammonia channel;
PDBTitle: substrate binding, deprotonation and selectivity at the periplasmic2 entrance of the e. coli ammonia channel amtb
9c3hd6A_



100.0 18
PDB header:membrane protein, transport protein
Chain: A: PDB Molecule:ammonium transporter rh type c;
PDBTitle: crystal structure of the human rhesus glycoprotein rhcg
10c3b9yA_



100.0 22
PDB header:transport protein
Chain: A: PDB Molecule:ammonium transporter family rh-like protein;
PDBTitle: crystal structure of the nitrosomonas europaea rh protein
11c4q2eA_



89.0 13
PDB header:transferase
Chain: A: PDB Molecule:phosphatidate cytidylyltransferase;
PDBTitle: crystal structure of an intramembrane cdp-dag synthetase central for2 phospholipid biosynthesis (s200c/s258c, active mutant)
12c5b57B_



87.2 16
PDB header:metal transport
Chain: B: PDB Molecule:putative hemin abc transport system, membrane protein;
PDBTitle: inward-facing conformation of abc heme importer bhuuv from2 burkholderia cenocepacia
13c4ezdB_



76.9 13
PDB header:transport protein
Chain: B: PDB Molecule:urea transporter 1;
PDBTitle: crystal structure of the ut-b urea transporter from bos taurus bound2 to selenourea
14c4q2gA_



63.3 12
PDB header:transferase
Chain: A: PDB Molecule:phosphatidate cytidylyltransferase;
PDBTitle: crystal structure of an intramembrane cdp-dag synthetase central for2 phospholipid biosynthesis (s200c/s223c, inactive mutant)
15c6gcsJ_



58.6 15
PDB header:oxidoreductase
Chain: J: PDB Molecule:nujm subunit;
PDBTitle: cryo-em structure of respiratory complex i from yarrowia lipolytica
16c4g1uB_



57.2 16
PDB header:transport protein/hydrolase
Chain: B: PDB Molecule:hemin transport system permease protein hmuu;
PDBTitle: x-ray structure of the bacterial heme transporter hmuuv from yersinia2 pestis
17c4dblB_



56.6 17
PDB header:transport protein
Chain: B: PDB Molecule:vitamin b12 import system permease protein btuc;
PDBTitle: crystal structure of e159q mutant of btucdf
18c3k3gA_



39.7 20
PDB header:transport protein
Chain: A: PDB Molecule:urea transporter;
PDBTitle: crystal structure of the urea transporter from desulfovibrio vulgaris2 bound to 1,3-dimethylurea
19d2dexx1



37.6 25
Fold:Common fold of diphtheria toxin/transcription factors/cytochrome f
Superfamily:Peptidylarginine deiminase Pad4, middle domain
Family:Peptidylarginine deiminase Pad4, middle domain
20c6mhqE_



28.5 21
PDB header:membrane protein
Chain: E: PDB Molecule:gap junction alpha-3 protein, connexin-46;
PDBTitle: structure of connexin-46 intercellular gap junction channel at 3.42 angstrom resolution by cryoem
21c1vryA_



not modelled 24.1 18
PDB header:membrane protein
Chain: A: PDB Molecule:glycine receptor alpha-1 chain;
PDBTitle: second and third transmembrane domains of the alpha-12 subunit of human glycine receptor
22d1l7va_



not modelled 21.1 14
Fold:ABC transporter involved in vitamin B12 uptake, BtuC
Superfamily:ABC transporter involved in vitamin B12 uptake, BtuC
Family:ABC transporter involved in vitamin B12 uptake, BtuC
23c5x3xm_



not modelled 20.5 15
PDB header:transport protein
Chain: M: PDB Molecule:cobalt transport protein cbim;
PDBTitle: 2.8a resolution structure of a cobalt energy-coupling factor2 transporter-cbimqo
24c5gufA_



not modelled 17.5 17
PDB header:transferase
Chain: A: PDB Molecule:cdp-archaeol synthase;
PDBTitle: structural insight into an intramembrane enzyme for archaeal membrane2 lipids biosynthesis
25c6hwhX_



not modelled 17.1 20
PDB header:electron transport
Chain: X: PDB Molecule:cytochrome c oxidase polypeptide 4;
PDBTitle: structure of a functional obligate respiratory supercomplex from2 mycobacterium smegmatis
26c6i1rA_



not modelled 16.9 11
PDB header:membrane protein
Chain: A: PDB Molecule:cmp-sialic acid transporter 1;
PDBTitle: crystal structure of cmp bound cst in an outward facing conformation
27c5i20C_



not modelled 15.5 13
PDB header:membrane protein
Chain: C: PDB Molecule:uncharacterized protein;
PDBTitle: crystal structure of protein
28c4rngE_



not modelled 14.8 25
PDB header:sugar binding protein
Chain: E: PDB Molecule:mtn3/saliva family;
PDBTitle: crystal structure of a bacterial homologue of sweet transporters
29c2m6iC_



not modelled 14.6 13
PDB header:membrane protein
Chain: C: PDB Molecule:full-length transmembrane domains of human glycine receptor
PDBTitle: putative pentameric open-channel structure of full-length2 transmembrane domains of human glycine receptor alpha1 subunit
30c5edlA_



not modelled 14.0 15
PDB header:transport protein
Chain: A: PDB Molecule:putative hmp/thiamine permease protein ykoe;
PDBTitle: crystal structure of an s-component of ecf transporter
31c4apsB_



not modelled 12.4 10
PDB header:transport protein
Chain: B: PDB Molecule:di-or tripeptide h+ symporter;
PDBTitle: crystal structure of a pot family peptide transporter in an inward2 open conformation.
32d2c42a2



not modelled 11.2 36
Fold:Thiamin diphosphate-binding fold (THDP-binding)
Superfamily:Thiamin diphosphate-binding fold (THDP-binding)
Family:PFOR PP module
33c4qncA_



not modelled 11.0 21
PDB header:membrane protein
Chain: A: PDB Molecule:chemical transport protein;
PDBTitle: crystal structure of a semisweet in an occluded state
34c5v2sA_



not modelled 11.0 33
PDB header:viral protein
Chain: A: PDB Molecule:envelope glycoprotein b;
PDBTitle: crystal structure of glycoprotein b from herpes simplex virus type i
35c6rtfA_



not modelled 9.4 16
PDB header:membrane protein
Chain: A: PDB Molecule:solute carrier family 26 member 9,solute carrier family 26
PDBTitle: structure of murine solute carrier 26 family member a9 (slc26a9) anion2 transporter in an intermediate state
36c5cthB_



not modelled 9.2 23
PDB header:transport protein
Chain: B: PDB Molecule:bidirectional sugar transporter sweet2b;
PDBTitle: the 3.7 a resolution structure of a eukaryotic sweet transporter
37c6bm8A_



not modelled 8.7 42
PDB header:viral protein
Chain: A: PDB Molecule:envelope glycoprotein b;
PDBTitle: crystal structure of glycoprotein b from herpes simplex virus type i
38c1f3kA_



not modelled 7.6 24
PDB header:toxin
Chain: A: PDB Molecule:omega-conotoxin txvii;
PDBTitle: three-dimensional solution structure of omega-conotoxin2 txvii, an l-type calcium channel blocker
39c4x5mB_



not modelled 7.4 14
PDB header:transport protein
Chain: B: PDB Molecule:uncharacterized protein;
PDBTitle: crystal structure of semisweet in the inward-open conformation
40c4n2gA_



not modelled 7.4 33
PDB header:hydrolase
Chain: A: PDB Molecule:protein-arginine deiminase type-2;
PDBTitle: crystal structure of protein arginine deiminase 2 (d169a, 10 mm ca2+)
41d1u1ha2



not modelled 7.2 40
Fold:TIM beta/alpha-barrel
Superfamily:UROD/MetE-like
Family:Cobalamin-independent methionine synthase
42c6exsA_



not modelled 7.1 12
PDB header:membrane protein
Chain: A: PDB Molecule:peptide abc transporter permease;
PDBTitle: crystal structure of a pot family transporter in complex with2 thioalcohol conjugated peptide.
43c6gcsg_



not modelled 6.8 24
PDB header:oxidoreductase
Chain: G: PDB Molecule:30-kda protein (nugm);
PDBTitle: cryo-em structure of respiratory complex i from yarrowia lipolytica
44c3sokB_



not modelled 6.2 11
PDB header:cell adhesion
Chain: B: PDB Molecule:fimbrial protein;
PDBTitle: dichelobacter nodosus pilin fima
45c5xpdA_



not modelled 6.1 17
PDB header:transport protein
Chain: A: PDB Molecule:sugar transporter;
PDBTitle: sugar transporter of atsweet13 in inward-facing state with a substrate2 analog
46c4ikyA_



not modelled 6.1 12
PDB header:transport protein
Chain: A: PDB Molecule:di-tripeptide abc transporter (permease);
PDBTitle: crystal structure of peptide transporter pot (e310q mutant) in complex2 with sulfate
47c4hlmD_



not modelled 6.0 17
PDB header:transferase
Chain: D: PDB Molecule:tankyrase-2;
PDBTitle: crystal structure of tankyrase 2 in complex with 3',4'-2 dihydroxyflavone
48c5iwsA_



not modelled 5.9 13
PDB header:transferase
Chain: A: PDB Molecule:protein-n(pi)-phosphohistidine-sugar phosphotransferase
PDBTitle: crystal structure of the transporter malt, the eiic domain from the2 maltose-specific phosphotransferase system
49c4yzfA_



not modelled 5.9 12
PDB header:immune system
Chain: A: PDB Molecule:band 3 anion transport protein;
PDBTitle: crystal structure of the anion exchanger domain of human erythrocyte2 band 3
50c2f1zB_



not modelled 5.8 18
PDB header:hydrolase
Chain: B: PDB Molecule:ubiquitin carboxyl-terminal hydrolase 7;
PDBTitle: crystal structure of hausp
51d1ttja_



not modelled 5.7 33
Fold:TIM beta/alpha-barrel
Superfamily:Triosephosphate isomerase (TIM)
Family:Triosephosphate isomerase (TIM)
52d1bwva1



not modelled 5.6 14
Fold:TIM beta/alpha-barrel
Superfamily:RuBisCo, C-terminal domain
Family:RuBisCo, large subunit, C-terminal domain
53c2dp3A_



not modelled 5.6 20
PDB header:isomerase
Chain: A: PDB Molecule:triosephosphate isomerase;
PDBTitle: crystal structure of a double mutant (c202a/a198v) of triosephosphate2 isomerase from giardia lamblia
54c5c2gD_



not modelled 5.5 13
PDB header:lyase
Chain: D: PDB Molecule:form ii rubisco;
PDBTitle: gws1b rubisco: form ii rubisco derived from uncultivated2 gallionellacea species (cabp-bound).
55c1izlJ_



not modelled 5.5 11
PDB header:photosynthesis
Chain: J: PDB Molecule:photosystem ii: subunit psba;
PDBTitle: crystal structure of photosystem ii
56d1kv5a_



not modelled 5.5 33
Fold:TIM beta/alpha-barrel
Superfamily:Triosephosphate isomerase (TIM)
Family:Triosephosphate isomerase (TIM)
57c2nq5A_



not modelled 5.5 33
PDB header:transferase
Chain: A: PDB Molecule:5-methyltetrahydropteroyltriglutamate--homocysteine
PDBTitle: crystal structure of methyltransferase from streptococcus mutans
58c2dexX_



not modelled 5.4 25
PDB header:hydrolase
Chain: X: PDB Molecule:protein-arginine deiminase type iv;
PDBTitle: crystal structure of human peptidylarginine deiminase 4 in complex2 with histone h3 n-terminal peptide including arg17
59d1wdda1



not modelled 5.4 12
Fold:TIM beta/alpha-barrel
Superfamily:RuBisCo, C-terminal domain
Family:RuBisCo, large subunit, C-terminal domain
60c4ztxA_



not modelled 5.1 27
PDB header:transferase
Chain: A: PDB Molecule:cobalamin-independent methionine synthase;
PDBTitle: neurospora crassa cobalamin-independent methionine synthase complexed2 with zn2+
61c3l7sA_



not modelled 5.1 33
PDB header:transferase
Chain: A: PDB Molecule:5-methyltetrahydropteroyltriglutamate--homocysteine
PDBTitle: crystal structure of mete coordinated with zinc from streptococcus2 mutans
62c3ppgA_



not modelled 5.1 40
PDB header:transferase
Chain: A: PDB Molecule:5-methyltetrahydropteroyltriglutamate--homocysteine
PDBTitle: crystal structure of the candida albicans methionine synthase by2 surface entropy reduction, alanine variant with zinc
63c5macD_



not modelled 5.1 27
PDB header:lyase
Chain: D: PDB Molecule:ribulose-1,5-bisphosphate carboxylase-oxygenase type iii;
PDBTitle: crystal structure of decameric methanococcoides burtonii rubisco2 complexed with 2-carboxyarabinitol bisphosphate

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Transmembrane helix prediction 

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