Phyre Home Retrieve Phyre Job Id
Emailmdejesus@rockefeller.edu
DescriptionRVBD2922A_(acyP)_3237828_3238109
DateThu Aug 8 16:20:08 BST 2019
Unique Job ID63b9856eb5141ab4
SequenceMSAPDVRLTA ... Download FASTA
Job Typenormal
Job Expiry

Summary 

Top model
Image coloured by rainbow N → C terminus
Model dimensions (Å):X:28.369 Y:31.424 Z:34.739
Model (left) based on template c3br8A_
Top template information
PDB header:hydrolase
Chain: A: PDB Molecule:probable acylphosphatase;
PDBTitle: crystal structure of acylphosphatase from bacillus subtilis
Confidence and coverage
Confidence:100.0% Coverage: 95%
88 residues ( 95% of your sequence) have been modelled with 100.0% confidence by the single highest scoring template.
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Sequence analysis 

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Secondary structure and disorder prediction [Show] 

Domain analysis [Show] 

Detailed template information [Hide] 

 

#
Template Alignment Coverage3D Model Confidence
% i.d. Template Information
1c3br8A_
100.0 32
PDB header:hydrolase
Chain: A: PDB Molecule:probable acylphosphatase;
PDBTitle: crystal structure of acylphosphatase from bacillus subtilis
2c2bjeA_
100.0 39
PDB header:hydrolase
Chain: A: PDB Molecule:acylphosphatase;
PDBTitle: acylphosphatase from sulfolobus solfataricus. monclinic p212 space group
3c2gv1A_
100.0 46
PDB header:hydrolase
Chain: A: PDB Molecule:probable acylphosphatase;
PDBTitle: nmr solution structure of the acylphosphatase from2 eschaerichia coli
4c2lxfA_
100.0 36
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:uncharacterized protein;
PDBTitle: solution nmr structure of a potential acylphosphatase from giardia2 lamblia, seattle structural genomics center for infectious disease3 target gilaa.01396.a
5c4hi2B_
100.0 36
PDB header:hydrolase
Chain: B: PDB Molecule:acylphosphatase;
PDBTitle: crystal structure of an acylphosphatase protein cage
6d1w2ia_
100.0 33
Fold:Ferredoxin-like
Superfamily:Acylphosphatase/BLUF domain-like
Family:Acylphosphatase-like
7d1ulra_
100.0 46
Fold:Ferredoxin-like
Superfamily:Acylphosphatase/BLUF domain-like
Family:Acylphosphatase-like
8d2acya_
100.0 23
Fold:Ferredoxin-like
Superfamily:Acylphosphatase/BLUF domain-like
Family:Acylphosphatase-like
9d1urra_
100.0 26
Fold:Ferredoxin-like
Superfamily:Acylphosphatase/BLUF domain-like
Family:Acylphosphatase-like
10d1apsa_
100.0 25
Fold:Ferredoxin-like
Superfamily:Acylphosphatase/BLUF domain-like
Family:Acylphosphatase-like
11d1gxua_
100.0 28
Fold:Ferredoxin-like
Superfamily:Acylphosphatase/BLUF domain-like
Family:Acylphosphatase-like
12c3vthA_
100.0 18
PDB header:transferase
Chain: A: PDB Molecule:hydrogenase maturation factor;
PDBTitle: crystal structure of full-length hypf in the phosphate- and2 nucleotide-bound form
13c4g9iA_
99.9 24
PDB header:transferase
Chain: A: PDB Molecule:hydrogenase maturation protein hypf;
PDBTitle: crystal structure of t.kodakarensis hypf
14c4f67A_
94.8 14
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:upf0176 protein lpg2838;
PDBTitle: three dimensional structure of the double mutant of upf0176 protein2 lpg2838 from legionella pneumophila at the resolution 1.8a, northeast3 structural genomics consortium (nesg) target lgr82
15c2kb2A_
87.3 24
PDB header:signaling protein, hydrolase regulator
Chain: A: PDB Molecule:blrp1;
PDBTitle: blrp1 bluf
16d2buna1
85.7 16
Fold:Ferredoxin-like
Superfamily:Acylphosphatase/BLUF domain-like
Family:BLUF domain
17c3jcrK_
85.0 33
PDB header:splicing
Chain: K: PDB Molecule:hprp3;
PDBTitle: 3d structure determination of the human*u4/u6.u5* tri-snrnp complex
18d1yrxa1
84.5 16
Fold:Ferredoxin-like
Superfamily:Acylphosphatase/BLUF domain-like
Family:BLUF domain
19c2hfnJ_
81.1 12
PDB header:electron transport
Chain: J: PDB Molecule:synechocystis photoreceptor (slr1694);
PDBTitle: crystal structures of the synechocystis photoreceptor slr1694 reveal2 distinct structural states related to signaling
20d2byca1
80.0 26
Fold:Ferredoxin-like
Superfamily:Acylphosphatase/BLUF domain-like
Family:BLUF domain
21d2qswa1
not modelled 77.7 12
Fold:Ferredoxin-like
Superfamily:ACT-like
Family:NIL domain-like
22d1x0pa1
not modelled 77.4 18
Fold:Ferredoxin-like
Superfamily:Acylphosphatase/BLUF domain-like
Family:BLUF domain
23d2f1fa2
not modelled 77.4 12
Fold:Ferredoxin-like
Superfamily:ACT-like
Family:IlvH-like
24d2fgca1
not modelled 75.0 12
Fold:Ferredoxin-like
Superfamily:ACT-like
Family:IlvH-like
25c4hh0B_
not modelled 73.6 17
PDB header:flavoprotein,signaling protein
Chain: B: PDB Molecule:appa protein;
PDBTitle: dark-state structure of appa c20s without the cys-rich region from rb.2 sphaeroides
26d2pc6a1
not modelled 72.8 16
Fold:Ferredoxin-like
Superfamily:ACT-like
Family:IlvH-like
27d2if1a_
not modelled 71.1 15
Fold:eIF1-like
Superfamily:eIF1-like
Family:eIF1-like
28c4yhwA_
not modelled 70.9 26
PDB header:splicing
Chain: A: PDB Molecule:u4/u6 small nuclear ribonucleoprotein prp3;
PDBTitle: yeast prp3 (296-469) in complex with fragment of u4/u6 di-snrna
29c2oghA_
not modelled 69.1 14
PDB header:translation
Chain: A: PDB Molecule:eukaryotic translation initiation factor eif-1;
PDBTitle: solution structure of yeast eif1
30c2xznF_
not modelled 68.3 13
PDB header:ribosome
Chain: F: PDB Molecule:eif1;
PDBTitle: crystal structure of the eukaryotic 40s ribosomal2 subunit in complex with initiation factor 1. this file3 contains the 40s subunit and initiation factor for4 molecule 2
31c5gapG_
not modelled 66.9 26
PDB header:transcription
Chain: G: PDB Molecule:u4/u6 small nuclear ribonucleoprotein prp3;
PDBTitle: body region of the u4/u6.u5 tri-snrnp
32c2fgcA_
not modelled 58.5 12
PDB header:transferase
Chain: A: PDB Molecule:acetolactate synthase, small subunit;
PDBTitle: crystal structure of acetolactate synthase- small subunit from2 thermotoga maritima
33c3c5tB_
not modelled 57.3 11
PDB header:signaling protein/signaling protein
Chain: B: PDB Molecule:exendin-4;
PDBTitle: crystal structure of the ligand-bound glucagon-like peptide-1 receptor2 extracellular domain
34c2f1fA_
not modelled 54.8 12
PDB header:transferase
Chain: A: PDB Molecule:acetolactate synthase isozyme iii small subunit;
PDBTitle: crystal structure of the regulatory subunit of acetohydroxyacid2 synthase isozyme iii from e. coli
35c3jcmK_
not modelled 52.5 26
PDB header:transcription
Chain: K: PDB Molecule:u4/u6 small nuclear ribonucleoprotein prp3;
PDBTitle: cryo-em structure of the spliceosomal u4/u6.u5 tri-snrnp
36c2pc6C_
not modelled 49.9 17
PDB header:lyase
Chain: C: PDB Molecule:probable acetolactate synthase isozyme iii (small subunit);
PDBTitle: crystal structure of putative acetolactate synthase- small subunit2 from nitrosomonas europaea
37c5o9zE_
not modelled 49.6 33
PDB header:splicing
Chain: E: PDB Molecule:u4/u6 small nuclear ribonucleoprotein prp3;
PDBTitle: cryo-em structure of a pre-catalytic human spliceosome primed for2 activation (b complex)
38c6mrrA_
not modelled 46.8 20
PDB header:de novo protein
Chain: A: PDB Molecule:foldit1;
PDBTitle: de novo designed protein foldit1
39d3dhxa1
not modelled 46.7 18
Fold:Ferredoxin-like
Superfamily:ACT-like
Family:NIL domain-like
40c5nbyA_
not modelled 46.4 10
PDB header:lyase
Chain: A: PDB Molecule:beta subunit of photoactivated adenylyl cyclase;
PDBTitle: structure of a bacterial light-regulated adenylyl cylcase
41c2rjzA_
not modelled 43.1 2
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:pilo protein;
PDBTitle: crystal structure of the type 4 fimbrial biogenesis protein pilo from2 pseudomonas aeruginosa
42c6b3jP_
not modelled 41.6 12
PDB header:signaling protein
Chain: P: PDB Molecule:exendin-p5;
PDBTitle: 3.3 angstrom phase-plate cryo-em structure of a biased agonist-bound2 human glp-1 receptor-gs complex
43d2qrra1
not modelled 34.7 8
Fold:Ferredoxin-like
Superfamily:ACT-like
Family:NIL domain-like
44c3zf7y_
not modelled 29.3 15
PDB header:ribosome
Chain: Y: PDB Molecule:60s ribosomal protein l24, putative;
PDBTitle: high-resolution cryo-electron microscopy structure of the trypanosoma2 brucei ribosome
45c3fhaD_
not modelled 27.8 22
PDB header:hydrolase
Chain: D: PDB Molecule:endo-beta-n-acetylglucosaminidase;
PDBTitle: structure of endo-beta-n-acetylglucosaminidase a
46d1fx0a2
not modelled 27.0 32
Fold:Domain of alpha and beta subunits of F1 ATP synthase-like
Superfamily:N-terminal domain of alpha and beta subunits of F1 ATP synthase
Family:N-terminal domain of alpha and beta subunits of F1 ATP synthase
47d2jdia2
not modelled 24.1 32
Fold:Domain of alpha and beta subunits of F1 ATP synthase-like
Superfamily:N-terminal domain of alpha and beta subunits of F1 ATP synthase
Family:N-terminal domain of alpha and beta subunits of F1 ATP synthase
48c4mo0A_
not modelled 23.0 11
PDB header:translation
Chain: A: PDB Molecule:protein translation factor sui1 homolog;
PDBTitle: crystal structure of aif1 from methanocaldococcus jannaschii
49c3j39H_
not modelled 22.6 17
PDB header:ribosome
Chain: H: PDB Molecule:60s ribosomal protein l9;
PDBTitle: structure of the d. melanogaster 60s ribosomal proteins
50d3ceda1
not modelled 21.8 11
Fold:Ferredoxin-like
Superfamily:ACT-like
Family:NIL domain-like
51c2dclB_
not modelled 21.2 13
PDB header:structural genomics, unknown function
Chain: B: PDB Molecule:hypothetical upf0166 protein ph1503;
PDBTitle: structure of ph1503 protein from pyrococcus horikoshii ot3
52c2mvzA_
not modelled 21.1 12
PDB header:isomerase
Chain: A: PDB Molecule:peptidyl-prolyl cis-trans isomerase;
PDBTitle: solution structure for cyclophilin a from geobacillus kaustophilus
53c3iz5F_
not modelled 20.6 13
PDB header:ribosome
Chain: F: PDB Molecule:60s ribosomal protein l9 (l6p);
PDBTitle: localization of the large subunit ribosomal proteins into a 5.5 a2 cryo-em map of triticum aestivum translating 80s ribosome
54c4yusA_
not modelled 20.4 10
PDB header:lyase
Chain: A: PDB Molecule:family 3 adenylate cyclase;
PDBTitle: crystal structure of photoactivated adenylyl cyclase of a2 cyanobacteriaoscillatoria acuminata in hexagonal form
55d1skyb2
not modelled 15.6 28
Fold:Domain of alpha and beta subunits of F1 ATP synthase-like
Superfamily:N-terminal domain of alpha and beta subunits of F1 ATP synthase
Family:N-terminal domain of alpha and beta subunits of F1 ATP synthase
56c6ge2A_
not modelled 15.5 12
PDB header:hormone
Chain: A: PDB Molecule:exendin-4;
PDBTitle: exendin-4 based dual glp-1/glucagon receptor agonist
57c2zkre_
not modelled 14.9 13
PDB header:ribosomal protein/rna
Chain: E: PDB Molecule:rna expansion segment es7 part ii;
PDBTitle: structure of a mammalian ribosomal 60s subunit within an 80s complex2 obtained by docking homology models of the rna and proteins into an3 8.7 a cryo-em map
58c3qm2A_
not modelled 14.4 12
PDB header:transferase
Chain: A: PDB Molecule:phosphoserine aminotransferase;
PDBTitle: 2.25 angstrom crystal structure of phosphoserine aminotransferase2 (serc) from salmonella enterica subsp. enterica serovar typhimurium
59c2jz2A_
not modelled 13.9 19
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:ssl0352 protein;
PDBTitle: solution nmr structure of ssl0352 protein from synechocystis sp. pcc2 6803. northeast structural genomics consortium target sgr42
60d1maba2
not modelled 13.1 32
Fold:Domain of alpha and beta subunits of F1 ATP synthase-like
Superfamily:N-terminal domain of alpha and beta subunits of F1 ATP synthase
Family:N-terminal domain of alpha and beta subunits of F1 ATP synthase
61c3gwpA_
not modelled 12.8 17
PDB header:lyase
Chain: A: PDB Molecule:carbon-sulfur lyase involved in aluminum resistance;
PDBTitle: crystal structure of carbon-sulfur lyase involved in aluminum2 resistance (yp_878183.1) from clostridium novyi nt at 2.90 a3 resolution
62c1qp6B_
not modelled 12.7 17
PDB header:de novo protein
Chain: B: PDB Molecule:protein (alpha2d);
PDBTitle: solution structure of alpha2d
63c1yzxB_
not modelled 12.3 20
PDB header:transferase
Chain: B: PDB Molecule:glutathione s-transferase kappa 1;
PDBTitle: crystal structure of human kappa class glutathione transferase
64d2fgca2
not modelled 12.2 9
Fold:Ferredoxin-like
Superfamily:ACT-like
Family:IlvH-like
65d2pc6a2
not modelled 11.1 15
Fold:Ferredoxin-like
Superfamily:ACT-like
Family:IlvH-like
66c1jrjA_
not modelled 10.9 11
PDB header:hormone/growth factor
Chain: A: PDB Molecule:exendin-4;
PDBTitle: solution structure of exendin-4 in 30-vol% trifluoroethanol
67c3ucoB_
not modelled 10.9 13
PDB header:lyase/lyase inhibitor
Chain: B: PDB Molecule:carbonic anhydrase;
PDBTitle: coccomyxa beta-carbonic anhydrase in complex with iodide
68d1a0ia1
not modelled 10.7 21
Fold:OB-fold
Superfamily:Nucleic acid-binding proteins
Family:DNA ligase/mRNA capping enzyme postcatalytic domain
69d1ydua1
not modelled 10.4 14
Fold:At5g01610-like
Superfamily:At5g01610-like
Family:At5g01610-like
70c3c9gB_
not modelled 10.3 8
PDB header:nucleotide binding protein
Chain: B: PDB Molecule:upf0200/upf0201 protein af_1395;
PDBTitle: crystal structure of uncharacterized upf0201 protein af_135
71d1i6pa_
not modelled 10.1 14
Fold:Resolvase-like
Superfamily:beta-carbonic anhydrase, cab
Family:beta-carbonic anhydrase, cab
72c5zcyA_
not modelled 9.8 23
PDB header:translation
Chain: A: PDB Molecule:protein translation factor sui1 homolog;
PDBTitle: crystal structure of archaeal translation initiation factor 1 at 1.52 angstroms resolution
73c3hfkB_
not modelled 9.5 20
PDB header:isomerase
Chain: B: PDB Molecule:4-methylmuconolactone methylisomerase;
PDBTitle: crystal structure of 4-methylmuconolactone methylisomerase (h52a) in2 complex with 4-methylmuconolactone
74d2hh8a1
not modelled 9.4 19
Fold:YdfO-like
Superfamily:YdfO-like
Family:YdfO-like
75c2a5vB_
not modelled 9.1 23
PDB header:lyase
Chain: B: PDB Molecule:carbonic anhydrase (carbonate dehydratase) (carbonic
PDBTitle: crystal structure of m. tuberculosis beta carbonic anhydrase, rv3588c,2 tetrameric form
76c1d0rA_
not modelled 9.1 13
PDB header:hormone/growth factor
Chain: A: PDB Molecule:glucagon-like peptide-1-(7-36)-amide;
PDBTitle: solution structure of glucagon-like peptide-1-(7-36)-amide in2 trifluoroethanol/water
77d1d1ra_
not modelled 8.9 18
Fold:eIF1-like
Superfamily:eIF1-like
Family:eIF1-like
78c1d1rA_
not modelled 8.9 18
PDB header:structural genomics
Chain: A: PDB Molecule:hypothetical 11.4 kd protein ycih in pyrf-osmb
PDBTitle: nmr solution structure of the product of the e. coli ycih2 gene.
79d2fyxa1
not modelled 8.7 18
Fold:Ferredoxin-like
Superfamily:Transposase IS200-like
Family:Transposase IS200-like
80c5swcE_
not modelled 8.6 26
PDB header:lyase
Chain: E: PDB Molecule:carbonic anhydrase;
PDBTitle: the structure of the beta-carbonic anhydrase ccaa
81c5yiiA_
not modelled 8.5 17
PDB header:transferase
Chain: A: PDB Molecule:phosphoserine aminotransferase;
PDBTitle: crystal structure of 45 amino acid deleted from n-terminal of2 phosphoserine aminotransferase (psat) of entamoeba histolytica
82c2wuhD_
not modelled 8.4 100
PDB header:receptor/peptide
Chain: D: PDB Molecule:collagen peptide;
PDBTitle: crystal structure of the ddr2 discoidin domain bound to a2 triple-helical collagen peptide
83c2vicA_
not modelled 8.3 11
PDB header:dna-binding protein
Chain: A: PDB Molecule:transposase orfa;
PDBTitle: crystal structure of the ishp608 transposase in complex2 with left end 26-mer dna and manganese
84c2wuhC_
not modelled 8.1 100
PDB header:receptor/peptide
Chain: C: PDB Molecule:collagen peptide;
PDBTitle: crystal structure of the ddr2 discoidin domain bound to a2 triple-helical collagen peptide
85c2wuhB_
not modelled 8.1 100
PDB header:receptor/peptide
Chain: B: PDB Molecule:collagen peptide;
PDBTitle: crystal structure of the ddr2 discoidin domain bound to a2 triple-helical collagen peptide
86c3j21N_
not modelled 8.0 12
PDB header:ribosome
Chain: N: PDB Molecule:50s ribosomal protein l10e;
PDBTitle: promiscuous behavior of proteins in archaeal ribosomes revealed by2 cryo-em: implications for evolution of eukaryotic ribosomes (50s3 ribosomal proteins)
87d2ckca1
not modelled 7.8 19
Fold:GYF/BRK domain-like
Superfamily:BRK domain-like
Family:BRK domain-like
88c2ckcA_
not modelled 7.8 19
PDB header:hydrolase
Chain: A: PDB Molecule:chromodomain-helicase-dna-binding protein 7;
PDBTitle: solution structures of the brk domains of the human chromo2 helicase domain 7 and 8, reveals structural similarity3 with gyf domain suggesting a role in protein interaction
89d1nvma1
not modelled 7.8 19
Fold:RuvA C-terminal domain-like
Superfamily:post-HMGL domain-like
Family:DmpG/LeuA communication domain-like
90c3eyxB_
not modelled 7.7 29
PDB header:lyase
Chain: B: PDB Molecule:carbonic anhydrase;
PDBTitle: crystal structure of carbonic anhydrase nce103 from2 saccharomyces cerevisiae
91c3nrbD_
not modelled 7.7 11
PDB header:hydrolase
Chain: D: PDB Molecule:formyltetrahydrofolate deformylase;
PDBTitle: crystal structure of a formyltetrahydrofolate deformylase (puru,2 pp_1943) from pseudomonas putida kt2440 at 2.05 a resolution
92c2yy3B_
not modelled 7.3 19
PDB header:translation
Chain: B: PDB Molecule:elongation factor 1-beta;
PDBTitle: crystal structure of translation elongation factor ef-1 beta from2 pyrococcus horikoshii
93d1vqoh1
not modelled 7.0 20
Fold:alpha/beta-Hammerhead
Superfamily:Ribosomal protein L16p/L10e
Family:Ribosomal protein L10e
94d2cz4a1
not modelled 6.9 20
Fold:Ferredoxin-like
Superfamily:GlnB-like
Family:Prokaryotic signal transducing protein
95d2v0ea1
not modelled 6.9 19
Fold:GYF/BRK domain-like
Superfamily:BRK domain-like
Family:BRK domain-like
96d2f1fa1
not modelled 6.8 16
Fold:Ferredoxin-like
Superfamily:ACT-like
Family:IlvH-like
97d3bida1
not modelled 6.8 23
Fold:YegP-like
Superfamily:YegP-like
Family:YegP-like
98c3tenD_
not modelled 6.6 24
PDB header:hydrolase
Chain: D: PDB Molecule:cs2 hydrolase;
PDBTitle: holo form of carbon disulfide hydrolase
99c6f45D_
not modelled 6.6 19
PDB header:viral protein
Chain: D: PDB Molecule:receptor recognition protein;
PDBTitle: crystal structure of the gp37-gp38 adhesin tip complex of the2 bacteriophage s16 long tail fiber

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