Phyre Home Retrieve Phyre Job Id
Emailmdejesus@rockefeller.edu
DescriptionRVBD2925c_(rnc)_3239839_3240561
DateThu Aug 8 16:20:08 BST 2019
Unique Job IDc7edc58aaafa160b
SequenceMIRSRQPLLD ... Download FASTA
Job Typenormal
Job Expiry

Summary 

Top model
Image coloured by rainbow N → C terminus
Model dimensions (Å):X:61.039 Y:59.686 Z:63.565
Model (left) based on template c4ce4h_
Top template information
PDB header:ribosome
Chain: H: PDB Molecule:
PDBTitle: 39s large subunit of the porcine mitochondrial ribosome
Confidence and coverage
Confidence:100.0% Coverage: 91%
219 residues ( 91% of your sequence) have been modelled with 100.0% confidence by the single highest scoring template.
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Sequence analysis 

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Secondary structure and disorder prediction [Show] 

Domain analysis [Show] 

Detailed template information [Hide] 

 

#
Template Alignment Coverage3D Model Confidence
% i.d. Template Information
1c4ce4h_
100.0 19
PDB header:ribosome
Chain: H: PDB Molecule:
PDBTitle: 39s large subunit of the porcine mitochondrial ribosome
2c4v1ah_
100.0 19
PDB header:ribosome
Chain: H: PDB Molecule:
PDBTitle: structure of the large subunit of the mammalian mitoribosome, part 22 of 2
3c5b16A_
100.0 31
PDB header:hydrolase
Chain: A: PDB Molecule:ribonuclease 3,drosha,ribonuclease 3,drosha,ribonuclease 3;
PDBTitle: x-ray structure of drosha in complex with the c-terminal tail of2 dgcr8.
4c1o0wB_
100.0 38
PDB header:hydrolase
Chain: B: PDB Molecule:ribonuclease iii;
PDBTitle: crystal structure of ribonuclease iii (tm1102) from thermotoga2 maritima at 2.0 a resolution
5c1vw45_
100.0 25
PDB header:ribosome
Chain: 5: PDB Molecule:54s ribosomal protein l3, mitochondrial;
PDBTitle: structure of the yeast mitochondrial large ribosomal subunit
6c1yywB_
100.0 36
PDB header:hydrolase/rna
Chain: B: PDB Molecule:ribonuclease iii;
PDBTitle: crystal structure of rnase iii from aquifex aeolicus2 complexed with double stranded rna at 2.8-angstrom3 resolution
7c5zamA_
100.0 28
PDB header:hydrolase/protein binding/rna
Chain: A: PDB Molecule:endoribonuclease dicer;
PDBTitle: cryo-em structure of human dicer and its complexes with a pre-mirna2 substrate
8c3c4tA_
100.0 27
PDB header:hydrolase
Chain: A: PDB Molecule:endoribonuclease dicer;
PDBTitle: structure of rnaseiiib and dsrna binding domains of mouse dicer
9c4oogC_
100.0 25
PDB header:hydrolase/rna
Chain: C: PDB Molecule:ribonuclease 3;
PDBTitle: crystal structure of yeast rnase iii (rnt1p) complexed with the2 product of dsrna processing
10c3rv0B_
100.0 29
PDB header:rna binding protein
Chain: B: PDB Molecule:k. polysporus dcr1;
PDBTitle: crystal structure of k. polysporus dcr1 without the c-terminal dsrbd
11c2a11A_
100.0 100
PDB header:transcription,translation,hydrolase
Chain: A: PDB Molecule:ribonuclease iii;
PDBTitle: crystal structure of nuclease domain of ribonuclase iii from2 mycobacterium tuberculosis
12c2eb1B_
100.0 28
PDB header:hydrolase
Chain: B: PDB Molecule:endoribonuclease dicer;
PDBTitle: crystal structure of the c-terminal rnase iii domain of human dicer
13d1o0wa1
100.0 38
Fold:RNase III domain-like
Superfamily:RNase III domain-like
Family:RNase III catalytic domain-like
14c3o2rD_
100.0 44
PDB header:hydrolase
Chain: D: PDB Molecule:ribonuclease iii;
PDBTitle: structural flexibility in region involved in dimer formation of2 nuclease domain of ribonuclase iii (rnc) from campylobacter jejuni
15c3n3wA_
100.0 43
PDB header:hydrolase
Chain: A: PDB Molecule:ribonuclease iii;
PDBTitle: 2.2 angstrom resolution crystal structure of nuclease domain of2 ribonuclase iii (rnc) from campylobacter jejuni
16c3rv1B_
100.0 27
PDB header:rna binding protein
Chain: B: PDB Molecule:k. polysporus dcr1;
PDBTitle: crystal structure of the n-terminal and rnase iii domains of k.2 polysporus dcr1 e224q mutant
17d2nuga1
100.0 33
Fold:RNase III domain-like
Superfamily:RNase III domain-like
Family:RNase III catalytic domain-like
18c1vw49_
100.0 24
PDB header:ribosome
Chain: 9: PDB Molecule:54s ribosomal protein l15, mitochondrial;
PDBTitle: structure of the yeast mitochondrial large ribosomal subunit
19c3rv0C_
100.0 29
PDB header:rna binding protein
Chain: C: PDB Molecule:k. polysporus dcr1;
PDBTitle: crystal structure of k. polysporus dcr1 without the c-terminal dsrbd
20c6buaA_
99.9 31
PDB header:rna binding protein
Chain: A: PDB Molecule:dicer-2, isoform a;
PDBTitle: drosophila dicer-2 apo homology model (helicase, platform-paz,2 rnaseiii domains)
21c4ounA_
not modelled 99.9 16
PDB header:hydrolase
Chain: A: PDB Molecule:mini-ribonuclease 3;
PDBTitle: crystal structure of mini-ribonuclease 3 from bacillus subtilis
22c2mdrA_
not modelled 99.7 26
PDB header:hydrolase
Chain: A: PDB Molecule:double-stranded rna-specific adenosine deaminase;
PDBTitle: solution structure of the third double-stranded rna-binding domain2 (dsrbd3) of human adenosine-deaminase adar1
23d1qu6a1
not modelled 99.6 27
Fold:dsRBD-like
Superfamily:dsRNA-binding domain-like
Family:Double-stranded RNA-binding domain (dsRBD)
24c2n3hA_
not modelled 99.6 28
PDB header:rna binding protein
Chain: A: PDB Molecule:double-stranded rna-binding protein 4;
PDBTitle: solution structure of drb4 dsrbd2 (viz. drb4(81-151))
25d1uila_
not modelled 99.6 22
Fold:dsRBD-like
Superfamily:dsRNA-binding domain-like
Family:Double-stranded RNA-binding domain (dsRBD)
26d1x49a1
not modelled 99.6 26
Fold:dsRBD-like
Superfamily:dsRNA-binding domain-like
Family:Double-stranded RNA-binding domain (dsRBD)
27c2n3fA_
not modelled 99.6 23
PDB header:rna binding protein
Chain: A: PDB Molecule:double-stranded rna-binding protein 4;
PDBTitle: solution structure of both dsrbds of drb4 along with linker (viz.2 drb4(1-153))
28d1uhza_
not modelled 99.6 29
Fold:dsRBD-like
Superfamily:dsRNA-binding domain-like
Family:Double-stranded RNA-binding domain (dsRBD)
29c2n3gA_
not modelled 99.5 28
PDB header:rna binding protein
Chain: A: PDB Molecule:double-stranded rna-binding protein 4;
PDBTitle: solution structure of drb4 dsrbd1 (viz. drb4(1-72))
30c2khxA_
not modelled 99.5 32
PDB header:gene regulation,nuclear protein
Chain: A: PDB Molecule:ribonuclease 3;
PDBTitle: drosha double-stranded rna binding motif
31d1x47a1
not modelled 99.5 29
Fold:dsRBD-like
Superfamily:dsRNA-binding domain-like
Family:Double-stranded RNA-binding domain (dsRBD)
32d1o0wa2
not modelled 99.5 39
Fold:dsRBD-like
Superfamily:dsRNA-binding domain-like
Family:Double-stranded RNA-binding domain (dsRBD)
33c1qu6A_
not modelled 99.5 26
PDB header:transferase
Chain: A: PDB Molecule:protein kinase pkr;
PDBTitle: structure of the double-stranded rna-binding domain of the2 protein kinase pkr reveals the molecular basis of its3 dsrna-mediated activation
34d1x48a1
not modelled 99.5 20
Fold:dsRBD-like
Superfamily:dsRNA-binding domain-like
Family:Double-stranded RNA-binding domain (dsRBD)
35c3adiC_
not modelled 99.5 34
PDB header:gene regulation/rna
Chain: C: PDB Molecule:f21m12.9 protein;
PDBTitle: structure of arabidopsis hyl1 and its molecular implications for mirna2 processing
36c3adjA_
not modelled 99.5 26
PDB header:gene regulation
Chain: A: PDB Molecule:f21m12.9 protein;
PDBTitle: structure of arabidopsis hyl1 and its molecular implications for mirna2 processing
37d1di2a_
not modelled 99.5 35
Fold:dsRBD-like
Superfamily:dsRNA-binding domain-like
Family:Double-stranded RNA-binding domain (dsRBD)
38d1qu6a2
not modelled 99.5 18
Fold:dsRBD-like
Superfamily:dsRNA-binding domain-like
Family:Double-stranded RNA-binding domain (dsRBD)
39c2ltsA_
not modelled 99.5 29
PDB header:rna binding protein
Chain: A: PDB Molecule:protein rde-4;
PDBTitle: solution structure of rde-4(150-235)
40d1stua_
not modelled 99.5 25
Fold:dsRBD-like
Superfamily:dsRNA-binding domain-like
Family:Double-stranded RNA-binding domain (dsRBD)
41c2yt4A_
not modelled 99.5 28
PDB header:rna binding protein
Chain: A: PDB Molecule:protein dgcr8;
PDBTitle: crystal structure of human dgcr8 core
42d1whna_
not modelled 99.5 27
Fold:dsRBD-like
Superfamily:dsRNA-binding domain-like
Family:Double-stranded RNA-binding domain (dsRBD)
43d2dixa1
not modelled 99.5 29
Fold:dsRBD-like
Superfamily:dsRNA-binding domain-like
Family:Double-stranded RNA-binding domain (dsRBD)
44c2l2nA_
not modelled 99.5 31
PDB header:rna binding protein, plant protein
Chain: A: PDB Molecule:hyponastic leave 1;
PDBTitle: backbone 1h, 13c, and 15n chemical shift assignments for the first2 dsrbd of protein hyl1
45d1ekza_
not modelled 99.5 23
Fold:dsRBD-like
Superfamily:dsRNA-binding domain-like
Family:Double-stranded RNA-binding domain (dsRBD)
46c6htuA_
not modelled 99.5 29
PDB header:rna binding protein
Chain: A: PDB Molecule:double-stranded rna-binding protein staufen homolog 1;
PDBTitle: structure of hstau1 dsrbd3-4 in complex with arf1 rna
47c6i3rA_
not modelled 99.5 26
PDB header:rna binding protein
Chain: A: PDB Molecule:dosage compensation regulator;
PDBTitle: structure, dynamics and rox2-lncrna binding of tandem double-stranded2 rna binding domains dsrbd1/2 of drosophila helicase mle
48c3adlA_
not modelled 99.5 37
PDB header:gene regulation/rna
Chain: A: PDB Molecule:risc-loading complex subunit tarbp2;
PDBTitle: structure of trbp2 and its molecule implications for mirna processing
49d2cpna1
not modelled 99.5 35
Fold:dsRBD-like
Superfamily:dsRNA-binding domain-like
Family:Double-stranded RNA-binding domain (dsRBD)
50c5npgA_
not modelled 99.4 36
PDB header:rna binding protein
Chain: A: PDB Molecule:loquacious, isoform f;
PDBTitle: solution structure of drosophila melanogaster loquacious dsrbd1
51d2nuga2
not modelled 99.4 45
Fold:dsRBD-like
Superfamily:dsRNA-binding domain-like
Family:Double-stranded RNA-binding domain (dsRBD)
52d1t4lb_
not modelled 99.4 28
Fold:dsRBD-like
Superfamily:dsRNA-binding domain-like
Family:Double-stranded RNA-binding domain (dsRBD)
53c1t4oA_
not modelled 99.4 25
PDB header:hydrolase
Chain: A: PDB Molecule:ribonuclease iii;
PDBTitle: crystal structure of rnt1p dsrbd
54d1t4oa_
not modelled 99.4 25
Fold:dsRBD-like
Superfamily:dsRNA-binding domain-like
Family:Double-stranded RNA-binding domain (dsRBD)
55c5npaA_
not modelled 99.4 32
PDB header:rna binding protein
Chain: A: PDB Molecule:loquacious;
PDBTitle: solution structure of drosophila melanogaster loquacious dsrbd2
56d1t4na_
not modelled 99.4 26
Fold:dsRBD-like
Superfamily:dsRNA-binding domain-like
Family:Double-stranded RNA-binding domain (dsRBD)
57c5n8lA_
not modelled 99.4 39
PDB header:rna binding protein
Chain: A: PDB Molecule:risc-loading complex subunit tarbp2;
PDBTitle: structure of trbp dsrbd 1 and 2 in complex with a 19 bp sirna (complex2 b)
58c3llhB_
not modelled 99.3 35
PDB header:rna binding protein
Chain: B: PDB Molecule:risc-loading complex subunit tarbp2;
PDBTitle: crystal structure of the first dsrbd of tar rna-binding protein 2
59c2ltrA_
not modelled 99.3 23
PDB header:rna binding protein
Chain: A: PDB Molecule:protein rde-4;
PDBTitle: solution structure of rde-4(32-136)
60c2l33A_
not modelled 99.2 35
PDB header:transcription regulator
Chain: A: PDB Molecule:interleukin enhancer-binding factor 3;
PDBTitle: solution nmr structure of drbm 2 domain of interleukin enhancer-2 binding factor 3 from homo sapiens, northeast structural genomics3 consortium target hr4527e
61c2ljhA_
not modelled 99.2 33
PDB header:hydrolase
Chain: A: PDB Molecule:double-stranded rna-specific editase adar;
PDBTitle: nmr structure of double-stranded rna-specific editase adar
62d2b7va1
not modelled 99.2 31
Fold:dsRBD-like
Superfamily:dsRNA-binding domain-like
Family:Double-stranded RNA-binding domain (dsRBD)
63c2qvwA_
not modelled 99.2 30
PDB header:hydrolase
Chain: A: PDB Molecule:glp_546_48378_50642;
PDBTitle: structure of giardia dicer refined against twinned data
64d2dmya1
not modelled 99.2 28
Fold:dsRBD-like
Superfamily:dsRNA-binding domain-like
Family:Double-stranded RNA-binding domain (dsRBD)
65d2b7ta1
not modelled 99.1 29
Fold:dsRBD-like
Superfamily:dsRNA-binding domain-like
Family:Double-stranded RNA-binding domain (dsRBD)
66c2lrsA_
not modelled 99.1 30
PDB header:hydrolase
Chain: A: PDB Molecule:endoribonuclease dicer homolog 1;
PDBTitle: the second dsrbd domain from a. thaliana dicer-like 1
67c5dv7C_
not modelled 99.1 29
PDB header:rna binding protein
Chain: C: PDB Molecule:interleukin enhancer-binding factor 3;
PDBTitle: crystal structure of nf90 tandem dsrbds with dsrna
68c2l3jA_
not modelled 99.0 28
PDB header:hydrolase/rna
Chain: A: PDB Molecule:double-stranded rna-specific editase 1;
PDBTitle: the solution structure of the adar2 dsrbm-rna complex reveals a2 sequence-specific read out of the minor groove
69d1whqa_
not modelled 98.8 27
Fold:dsRBD-like
Superfamily:dsRNA-binding domain-like
Family:Double-stranded RNA-binding domain (dsRBD)
70d1u61a_
not modelled 98.4 25
Fold:RNase III domain-like
Superfamily:RNase III domain-like
Family:RNase III catalytic domain-like
71c2gslE_
not modelled 98.1 23
PDB header:structural genomics, unknown function
Chain: E: PDB Molecule:hypothetical protein;
PDBTitle: x-ray crystal structure of protein fn1578 from fusobacterium2 nucleatum. northeast structural genomics consortium target nr1.
72c5aorA_
not modelled 97.8 23
PDB header:hydrolase/rna
Chain: A: PDB Molecule:dosage compensation regulator;
PDBTitle: structure of mle rna adp alf4 complex
73c4dkkA_
not modelled 97.3 15
PDB header:rna binding protein
Chain: A: PDB Molecule:double-stranded rna-binding protein staufen homolog 1;
PDBTitle: the x-ray crystal structure of the human stau1 ssm-'rbd'5 domain-2 swapped dimer
74c4wyqB_
not modelled 97.3 13
PDB header:hydrolase/protein binding
Chain: B: PDB Molecule:risc-loading complex subunit tarbp2;
PDBTitle: crystal structure of the dicer-trbp interface
75c5cffE_
not modelled 97.3 22
PDB header:transcription/rna binding protein
Chain: E: PDB Molecule:staufen;
PDBTitle: crystal structure of miranda/staufen dsrbd5 complex
76c2db2A_
not modelled 96.8 22
PDB header:rna binding protein
Chain: A: PDB Molecule:kiaa0890 protein;
PDBTitle: solution structure of the double-stranded rna binding2 domain in kiaa0890 protein
77c4x8wE_
not modelled 96.6 15
PDB header:gene regulation
Chain: E: PDB Molecule:loquacious, isoform b;
PDBTitle: dsrbd3 of loquacious
78c5f3qB_
not modelled 96.1 27
PDB header:rna binding protein
Chain: B: PDB Molecule:putative uncharacterized protein;
PDBTitle: crystal structure of a noncanonical dicer protein from entamoeba2 histolytica
79c3htxA_
not modelled 95.8 17
PDB header:transferase/rna
Chain: A: PDB Molecule:hen1;
PDBTitle: crystal structure of small rna methyltransferase hen1
80c2kouA_
not modelled 94.9 18
PDB header:hydrolase
Chain: A: PDB Molecule:dicer-like protein 4;
PDBTitle: dicer like protein
81d1ztda1
not modelled 71.6 23
Fold:RNase III domain-like
Superfamily:RNase III domain-like
Family:PF0609-like
82c5apgA_
not modelled 39.3 23
PDB header:transferase
Chain: A: PDB Molecule:tsr3;
PDBTitle: structure of the sam-dependent rrna:acp-transferase tsr32 from vulcanisaeta distributa
83c3bbnE_
not modelled 37.9 25
PDB header:ribosome
Chain: E: PDB Molecule:ribosomal protein s5;
PDBTitle: homology model for the spinach chloroplast 30s subunit fitted to 9.4a2 cryo-em map of the 70s chlororibosome.
84c1snaA_
not modelled 34.3 29
PDB header:de novo protein
Chain: A: PDB Molecule:tetrameric beta-beta-alpha mini-protein;
PDBTitle: an oligomeric domain-swapped beta-beta-alpha mini-protein
85c1snaC_
not modelled 34.3 29
PDB header:de novo protein
Chain: C: PDB Molecule:tetrameric beta-beta-alpha mini-protein;
PDBTitle: an oligomeric domain-swapped beta-beta-alpha mini-protein
86c1snaB_
not modelled 34.3 29
PDB header:de novo protein
Chain: B: PDB Molecule:tetrameric beta-beta-alpha mini-protein;
PDBTitle: an oligomeric domain-swapped beta-beta-alpha mini-protein
87c1snaD_
not modelled 34.3 29
PDB header:de novo protein
Chain: D: PDB Molecule:tetrameric beta-beta-alpha mini-protein;
PDBTitle: an oligomeric domain-swapped beta-beta-alpha mini-protein
88c1p6gE_
not modelled 32.7 30
PDB header:ribosome
Chain: E: PDB Molecule:30s ribosomal protein s5;
PDBTitle: real space refined coordinates of the 30s subunit fitted into the low2 resolution cryo-em map of the ef-g.gtp state of e. coli 70s ribosome
89c5mmje_
not modelled 32.6 24
PDB header:ribosome
Chain: E: PDB Molecule:
PDBTitle: structure of the small subunit of the chloroplast ribosome
90c3iwfA_
not modelled 30.1 4
PDB header:transcription regulator
Chain: A: PDB Molecule:transcription regulator rpir family;
PDBTitle: the crystal structure of the n-terminal domain of a rpir2 transcriptional regulator from staphylococcus epidermidis to 1.4a
91c1eg0B_
not modelled 30.0 32
PDB header:ribosome
PDB COMPND:
92c5ap8A_
not modelled 29.3 19
PDB header:transferase
Chain: A: PDB Molecule:tsr3;
PDBTitle: structure of the sam-dependent rrna:acp-transferase tsr32 from s. solfataricus
93c2ow8f_
not modelled 28.6 27
PDB header:ribosome
Chain: F: PDB Molecule:
PDBTitle: crystal structure of a 70s ribosome-trna complex reveals functional2 interactions and rearrangements. this file, 2ow8, contains the 30s3 ribosome subunit, two trna, and mrna molecules. 50s ribosome subunit4 is in the file 1vsa.
94c2zkqe_
not modelled 27.3 19
PDB header:ribosomal protein/rna
Chain: E: PDB Molecule:rna expansion segment es6 part ii;
PDBTitle: structure of a mammalian ribosomal 40s subunit within an 80s complex2 obtained by docking homology models of the rna and proteins into an3 8.7 a cryo-em map
95c1d3uA_
not modelled 26.1 17
PDB header:gene regulation/dna
Chain: A: PDB Molecule:tata-binding protein;
PDBTitle: tata-binding protein/transcription factor (ii)b/bre+tata-2 box complex from pyrococcus woesei
96d2qale2
not modelled 25.7 30
Fold:dsRBD-like
Superfamily:dsRNA-binding domain-like
Family:Ribosomal S5 protein, N-terminal domain
97d1qnaa1
not modelled 23.6 17
Fold:TBP-like
Superfamily:TATA-box binding protein-like
Family:TATA-box binding protein (TBP), C-terminal domain
98c1sn9A_
not modelled 22.9 29
PDB header:de novo protein
Chain: A: PDB Molecule:tetrameric beta-beta-alpha mini-protein;
PDBTitle: an oligomeric domain-swapped beta-beta-alpha mini-protein
99c1sn9D_
not modelled 22.9 29
PDB header:de novo protein
Chain: D: PDB Molecule:tetrameric beta-beta-alpha mini-protein;
PDBTitle: an oligomeric domain-swapped beta-beta-alpha mini-protein
100c1sn9C_
not modelled 22.9 29
PDB header:de novo protein
Chain: C: PDB Molecule:tetrameric beta-beta-alpha mini-protein;
PDBTitle: an oligomeric domain-swapped beta-beta-alpha mini-protein
101c1sn9B_
not modelled 22.9 29
PDB header:de novo protein
Chain: B: PDB Molecule:tetrameric beta-beta-alpha mini-protein;
PDBTitle: an oligomeric domain-swapped beta-beta-alpha mini-protein
102d1aisa1
not modelled 21.9 17
Fold:TBP-like
Superfamily:TATA-box binding protein-like
Family:TATA-box binding protein (TBP), C-terminal domain
103d1cdwa1
not modelled 21.7 16
Fold:TBP-like
Superfamily:TATA-box binding protein-like
Family:TATA-box binding protein (TBP), C-terminal domain

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