Phyre Home Retrieve Phyre Job Id
Emailmdejesus@rockefeller.edu
DescriptionRVBD2926c_(-)_3240558_3241181
DateThu Aug 8 16:20:08 BST 2019
Unique Job ID440f368f52ab6c53
SequenceVDLGGVRRRI ... Download FASTA
Job Typenormal
Job Expiry

Summary 

Top model
Image coloured by rainbow N → C terminus
Model dimensions (Å):X:33.604 Y:39.597 Z:31.343
Model (left) based on template c5iy9Q_
Top template information
PDB header:transcription, transferase/dna/rna
Chain: Q: PDB Molecule:general transcription factor iie subunit 1;
PDBTitle: human holo-pic in the initial transcribing state (no iis)
Confidence and coverage
Confidence: 28.3% Coverage: 16%
33 residues ( 16% of your sequence) have been modelled with 28.3% confidence by the single highest scoring template.
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Sequence analysis 

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Secondary structure and disorder prediction [Show] 

Domain analysis [Show] 

Detailed template information [Hide] 

 

#
Template Alignment Coverage3D Model Confidence
% i.d. Template Information
1c5iy9Q_



28.3 15
PDB header:transcription, transferase/dna/rna
Chain: Q: PDB Molecule:general transcription factor iie subunit 1;
PDBTitle: human holo-pic in the initial transcribing state (no iis)
2c2c55A_



23.3 31
PDB header:viral protein
Chain: A: PDB Molecule:protein p6;
PDBTitle: solution structure of the human immunodeficiency virus type2 1 p6 protein
3c5ezdB_



19.2 22
PDB header:hydrolase
Chain: B: PDB Molecule:kunitz-type protease inhibitor 1;
PDBTitle: crystal structure of a hepatocyte growth factor activator inhibitor-12 (hai-1) fragment covering the pkd-like 'internal' domain and kunitz3 domain 1
4c1i7xD_



19.0 45
PDB header:cell adhesion
Chain: D: PDB Molecule:epithelial-cadherin;
PDBTitle: beta-catenin/e-cadherin complex
5d2dofa1



18.0 30
Fold:Another 3-helical bundle
Superfamily:FF domain
Family:FF domain
6d1pfva3



18.0 32
Fold:Rubredoxin-like
Superfamily:Methionyl-tRNA synthetase (MetRS), Zn-domain
Family:Methionyl-tRNA synthetase (MetRS), Zn-domain
7c2l9vA_



16.4 40
PDB header:rna binding protein
Chain: A: PDB Molecule:pre-mrna-processing factor 40 homolog a;
PDBTitle: nmr structure of the ff domain l24a mutant's folding transition state
8c1i7wB_



15.8 40
PDB header:cell adhesion
Chain: B: PDB Molecule:epithelial-cadherin;
PDBTitle: beta-catenin/phosphorylated e-cadherin complex
9d1yuja_



14.3 31
Fold:beta-beta-alpha zinc fingers
Superfamily:beta-beta-alpha zinc fingers
Family:Classic zinc finger, C2H2
10c2a93B_



13.9 44
PDB header:leucine zippers
Chain: B: PDB Molecule:c-myc-max heterodimeric leucine zipper;
PDBTitle: nmr solution structure of the c-myc-max heterodimeric2 leucine zipper, 40 structures
11d3d3ra1



12.4 54
Fold:OB-fold
Superfamily:HupF/HypC-like
Family:HupF/HypC-like
12c3fqmA_



11.9 23
PDB header:metal binding protein
Chain: A: PDB Molecule:non-structural protein 5a;
PDBTitle: crystal structure of a novel dimeric form of hcv ns5a domain i protein
13d1j58a_



11.8 12
Fold:Double-stranded beta-helix
Superfamily:RmlC-like cupins
Family:Germin/Seed storage 7S protein
14d2fiya1



11.5 30
Fold:FdhE-like
Superfamily:FdhE-like
Family:FdhE-like
15d2a90a2



10.4 23
Fold:WWE domain
Superfamily:WWE domain
Family:WWE domain
16c3d3rA_



10.4 54
PDB header:chaperone
Chain: A: PDB Molecule:hydrogenase assembly chaperone hypc/hupf;
PDBTitle: crystal structure of the hydrogenase assembly chaperone hypc/hupf2 family protein from shewanella oneidensis mr-1
17d2z1ca1



10.3 54
Fold:OB-fold
Superfamily:HupF/HypC-like
Family:HupF/HypC-like
18c5buxB_



9.5 19
PDB header:lyase
Chain: B: PDB Molecule:3-hydroxyacyl-[acyl-carrier-protein] dehydratase fabz;
PDBTitle: crystal structure of 3-hydroxyacyl-acp dehydratase (fabz) from2 yersinia pestis with glycerol bound
19c2n8dA_



9.4 25
PDB header:de novo protein, antimicrobial peptide
Chain: A: PDB Molecule:antimicrobial peptide lavracin;
PDBTitle: in silico designed antimicrobial peptide lavracin
20c5fywW_



9.1 23
PDB header:transcription
Chain: W: PDB Molecule:transcription initiation factor iie subunit alpha;
PDBTitle: transcription initiation complex structures elucidate dna opening (oc)
21d2ot2a1



not modelled 8.8 38
Fold:OB-fold
Superfamily:HupF/HypC-like
Family:HupF/HypC-like
22c2nx6A_



not modelled 8.5 44
PDB header:structural protein
Chain: A: PDB Molecule:nematocyst outer wall antigen;
PDBTitle: structure of nowa cysteine rich domain 6
23d1lv3a_



not modelled 8.1 45
Fold:Glucocorticoid receptor-like (DNA-binding domain)
Superfamily:Glucocorticoid receptor-like (DNA-binding domain)
Family:Hypothetical zinc finger protein YacG
24d2grea1



not modelled 8.0 13
Fold:Domain of alpha and beta subunits of F1 ATP synthase-like
Superfamily:Aminopeptidase/glucanase lid domain
Family:Aminopeptidase/glucanase lid domain
25d1kf6b2



not modelled 7.6 18
Fold:beta-Grasp (ubiquitin-like)
Superfamily:2Fe-2S ferredoxin-like
Family:2Fe-2S ferredoxin domains from multidomain proteins
26c3lpeF_



not modelled 7.5 23
PDB header:transferase
Chain: F: PDB Molecule:dna-directed rna polymerase subunit e'';
PDBTitle: crystal structure of spt4/5ngn heterodimer complex from methanococcus2 jannaschii
27c6fw2A_



not modelled 6.9 43
PDB header:oxidoreductase
Chain: A: PDB Molecule:mitochondrial amidoxime-reducing component 1,endolysin,
PDBTitle: crystal structure of human marc1
28c5zb8B_



not modelled 6.6 36
PDB header:dna binding protein
Chain: B: PDB Molecule:pfuendoq;
PDBTitle: crystal structure of the novel lesion-specific endonuclease pfuendoq2 from pyrococcus furiosus
29d2akla2



not modelled 6.5 26
Fold:Rubredoxin-like
Superfamily:Zinc beta-ribbon
Family:PhnA zinc-binding domain
30c1bi6H_



not modelled 6.5 67
PDB header:cysteine protease inhibitor
Chain: H: PDB Molecule:bromelain inhibitor vi;
PDBTitle: nmr structure of bromelain inhibitor vi from pineapple stem
31c5ijlA_



not modelled 6.2 21
PDB header:transferase
Chain: A: PDB Molecule:dna polymerase ii large subunit;
PDBTitle: d-family dna polymerase - dp2 subunit (catalytic subunit)
32d1ex0a2



not modelled 6.2 18
Fold:Immunoglobulin-like beta-sandwich
Superfamily:Transglutaminase, two C-terminal domains
Family:Transglutaminase, two C-terminal domains
33d1pvma3



not modelled 6.2 46
Fold:Rubredoxin-like
Superfamily:Hypothetical protein Ta0289 C-terminal domain
Family:Hypothetical protein Ta0289 C-terminal domain
34c2bi6H_



not modelled 6.1 46
PDB header:cysteine protease inhibitor
Chain: H: PDB Molecule:bromelain inhibitor vi;
PDBTitle: nmr study of bromelain inhibitor vi from pineapple stem
35c2hm3A_



not modelled 6.1 50
PDB header:structural protein
Chain: A: PDB Molecule:nematocyst outer wall antigen;
PDBTitle: nematocyst outer wall antigen, cysteine rich domain nw1
36d1vjja2



not modelled 5.8 29
Fold:Immunoglobulin-like beta-sandwich
Superfamily:Transglutaminase, two C-terminal domains
Family:Transglutaminase, two C-terminal domains
37c5fmfR_



not modelled 5.8 38
PDB header:transcription
Chain: R: PDB Molecule:transcription initiation factor iie subunit alpha, tfa1;
PDBTitle: the p-lobe of rna polymerase ii pre-initiation complex
38c3wwnB_



not modelled 5.7 44
PDB header:metal binding protein/transferase
Chain: B: PDB Molecule:orff;
PDBTitle: crystal structure of lysz from thermus thermophilus complex with lysw
39d1zfoa_



not modelled 5.5 56
Fold:Glucocorticoid receptor-like (DNA-binding domain)
Superfamily:Glucocorticoid receptor-like (DNA-binding domain)
Family:LASP-1
40d2cupa2



not modelled 5.5 63
Fold:Glucocorticoid receptor-like (DNA-binding domain)
Superfamily:Glucocorticoid receptor-like (DNA-binding domain)
Family:LIM domain
41c3mjhD_



not modelled 5.4 55
PDB header:protein transport
Chain: D: PDB Molecule:early endosome antigen 1;
PDBTitle: crystal structure of human rab5a in complex with the c2h2 zinc finger2 of eea1
42c2hm4A_



not modelled 5.3 50
PDB header:structural protein
Chain: A: PDB Molecule:nematocyst outer wall antigen;
PDBTitle: nematocyst outer wall antigen, nw1 k21p
43c2oa2A_



not modelled 5.1 17
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:bh2720 protein;
PDBTitle: crystal structure of bh2720 (10175341) from bacillus halodurans at2 1.41 a resolution

Binding site prediction 

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