Phyre Home Retrieve Phyre Job Id
Emailmdejesus@rockefeller.edu
DescriptionRVBD2945c_(lppX)_3290634_3291335
DateThu Aug 8 16:20:10 BST 2019
Unique Job ID9a24cbbb8eb3ff28
SequenceMNDGKRAVTS ... Download FASTA
Job Typenormal
Job Expiry

Summary 

Top model
Image coloured by rainbow N → C terminus
Model dimensions (Å):X:44.714 Y:41.790 Z:48.178
Model (left) based on template d2byoa1
Top template information
Fold:LolA-like prokaryotic lipoproteins and lipoprotein localization factors
Superfamily:Prokaryotic lipoproteins and lipoprotein localization factors
Family:LppX-like
Confidence and coverage
Confidence:100.0% Coverage: 79%
183 residues ( 79% of your sequence) have been modelled with 100.0% confidence by the single highest scoring template.
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Sequence analysis 

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Secondary structure and disorder prediction [Show] 

Domain analysis [Show] 

Detailed template information [Hide] 

 

#
Template Alignment Coverage3D Model Confidence
% i.d. Template Information
1d2byoa1



100.0 93
Fold:LolA-like prokaryotic lipoproteins and lipoprotein localization factors
Superfamily:Prokaryotic lipoproteins and lipoprotein localization factors
Family:LppX-like
2c3mhaB_



100.0 32
PDB header:lipid binding protein
Chain: B: PDB Molecule:lipoprotein lprg;
PDBTitle: crystal structure of lprg from mycobacterium tuberculosis bound to pim
3c4qa8A_



100.0 31
PDB header:lipid transport
Chain: A: PDB Molecule:putative lipoprotein lprf;
PDBTitle: crystal structure of lprf from mycobacterium bovis
4c3buuB_



97.8 15
PDB header:structural genomics, unknown function
Chain: B: PDB Molecule:uncharacterized lola superfamily protein ne2245;
PDBTitle: crystal structure of lola superfamily protein ne2245 from2 nitrosomonas europaea
5c4mxtA_



97.1 14
PDB header:protein transport
Chain: A: PDB Molecule:uncharacterized protein;
PDBTitle: crystal structure of an outer-membrane lipoprotein carrier protein2 (bacuni_04723) from bacteroides uniformis atcc 8492 at 1.40 a3 resolution
6c6in8A_



96.2 9
PDB header:membrane protein
Chain: A: PDB Molecule:sigma factor algu regulatory protein mucb;
PDBTitle: crystal structure of mucb
7c2v43A_



94.2 15
PDB header:regulator
Chain: A: PDB Molecule:sigma-e factor regulatory protein rseb;
PDBTitle: crystal structure of rseb: a sensor for periplasmic stress2 response in e. coli
8c4z48B_



90.1 22
PDB header:structural biology, unknown function
Chain: B: PDB Molecule:uncharacterized protein;
PDBTitle: crystal structure of a duf1329 family protein (despig_00262) from2 desulfovibrio piger atcc 29098 at 1.75 a resolution
9c3bk5A_



82.7 13
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:putative outer membrane lipoprotein-sorting protein;
PDBTitle: crystal structure of putative outer membrane lipoprotein-sorting2 protein domain from vibrio parahaemolyticus
10c3woaA_



76.5 7
PDB header:dna binding protein, sugar binding prote
Chain: A: PDB Molecule:repressor protein ci, maltose-binding periplasmic protein;
PDBTitle: crystal structure of lambda repressor (1-45) fused with maltose-2 binding protein
11c4mjsQ_



49.3 25
PDB header:transferase/protein binding
Chain: Q: PDB Molecule:protein kinase c zeta type;
PDBTitle: crystal structure of a pb1 complex
12c2w7qB_



45.9 10
PDB header:protein transport
Chain: B: PDB Molecule:outer-membrane lipoprotein carrier protein;
PDBTitle: structure of pseudomonas aeruginosa lola
13c6mitC_



21.0 30
PDB header:lipid transport
Chain: C: PDB Molecule:lipopolysaccharide export system protein lptc;
PDBTitle: lptbfgc from enterobacter cloacae
14c5b3zB_



16.3 15
PDB header:isomerase,sugar binding protein
Chain: B: PDB Molecule:peptidyl-prolyl cis-trans isomerase nima-interacting 1,
PDBTitle: crystal structure of hpin1 ww domain (5-39) fused with maltose-binding2 protein
15c5az3A_



16.0 15
PDB header:transport protein
Chain: A: PDB Molecule:abc-type transporter, periplasmic component;
PDBTitle: crystal structure of heme binding protein hmut
16c3p8dB_



15.0 9
PDB header:protein binding
Chain: B: PDB Molecule:medulloblastoma antigen mu-mb-50.72;
PDBTitle: crystal structure of the second tudor domain of human phf20 (homodimer2 form)
17c2ldmA_



14.5 9
PDB header:transcription/protein binding
Chain: A: PDB Molecule:uncharacterized protein;
PDBTitle: solution structure of human phf20 tudor2 domain bound to a p53 segment2 containing a dimethyllysine analog p53k370me2
18c4zv4C_



12.9 44
PDB header:translation
Chain: C: PDB Molecule:tse6;
PDBTitle: structure of tse6 in complex with ef-tu
19d2hqxa1



11.1 12
Fold:SH3-like barrel
Superfamily:Tudor/PWWP/MBT
Family:Tudor domain
20c2hqxB_



11.1 12
PDB header:transcription
Chain: B: PDB Molecule:p100 co-activator tudor domain;
PDBTitle: crystal structure of human p100 tudor domain conserved2 region
21d1wmxa_



not modelled 8.9 32
Fold:Galactose-binding domain-like
Superfamily:Galactose-binding domain-like
Family:Family 30 carbohydrate binding module, CBM30 (PKD repeat)
22c5o60Y_



not modelled 8.8 16
PDB header:ribosome
Chain: Y: PDB Molecule:50s ribosomal protein l28;
PDBTitle: structure of the 50s large ribosomal subunit from mycobacterium2 smegmatis
23c2equA_



not modelled 7.9 6
PDB header:protein binding
Chain: A: PDB Molecule:phd finger protein 20-like 1;
PDBTitle: solution structure of the tudor domain of phd finger2 protein 20-like 1
24c6gwjD_



not modelled 7.6 19
PDB header:rna binding protein
Chain: D: PDB Molecule:ekc/keops complex subunit gon7;
PDBTitle: protein complex
25c2e76D_



not modelled 7.5 4
PDB header:photosynthesis
Chain: D: PDB Molecule:cytochrome b6-f complex iron-sulfur subunit;
PDBTitle: crystal structure of the cytochrome b6f complex with tridecyl-2 stigmatellin (tds) from m.laminosus
26c3qiiA_



not modelled 6.9 9
PDB header:transcription regulator
Chain: A: PDB Molecule:phd finger protein 20;
PDBTitle: crystal structure of tudor domain 2 of human phd finger protein 20
27c2k9yB_



not modelled 6.5 40
PDB header:transferase
Chain: B: PDB Molecule:ephrin type-a receptor 2;
PDBTitle: epha2 dimeric structure in the lipidic bicelle at ph 5.0
28c2k9yA_



not modelled 6.5 40
PDB header:transferase
Chain: A: PDB Molecule:ephrin type-a receptor 2;
PDBTitle: epha2 dimeric structure in the lipidic bicelle at ph 5.0
29c1nbjA_



not modelled 6.5 38
PDB header:plant protein
Chain: A: PDB Molecule:cycloviolacin o1;
PDBTitle: high-resolution solution structure of cycloviolacin o1
30d1nbja_



not modelled 6.5 38
Fold:Knottins (small inhibitors, toxins, lectins)
Superfamily:Cyclotides
Family:Cycloviolacin
31d1r17a1



not modelled 6.5 15
Fold:Common fold of diphtheria toxin/transcription factors/cytochrome f
Superfamily:Bacterial adhesins
Family:Fibrinogen-binding domain
32c2lojA_



not modelled 6.2 25
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:putative cytoplasmic protein;
PDBTitle: solution nmr structure of tstm1273 from salmonella typhimurium lt2,2 nesg target stt322, csgid target idp01027 and ocsp target tstm1273
33c1vb8A_



not modelled 6.0 38
PDB header:plant protein
Chain: A: PDB Molecule:viola hederacea root peptide 1;
PDBTitle: solution structure of vhr1, the first cyclotide from root2 tissue
34d1vb8a_



not modelled 6.0 38
Fold:Knottins (small inhibitors, toxins, lectins)
Superfamily:Cyclotides
Family:Cycloviolacin
35c4e6nB_



not modelled 5.9 25
PDB header:protein binding
Chain: B: PDB Molecule:methyltransferase type 12;
PDBTitle: crystal structure of bacterial pnkp-c/hen1-n heterodimer
36c2jraB_



not modelled 5.4 15
PDB header:structural genomics, unknown function
Chain: B: PDB Molecule:protein rpa2121;
PDBTitle: a novel domain-swapped solution nmr structure of protein rpa2121 from2 rhodopseudomonas palustris. northeast structural genomics target rpt6
37c4q5wB_



not modelled 5.4 15
PDB header:transcription
Chain: B: PDB Molecule:maternal protein tudor;
PDBTitle: crystal structure of extended-tudor 9 of drosophila melanogaster

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