Phyre Home Retrieve Phyre Job Id
Emailmdejesus@rockefeller.edu
DescriptionRVBD2963_(-)_3315246_3316466
DateThu Aug 8 16:20:12 BST 2019
Unique Job ID91ead3e914fafd84
SequenceVTSTKVEDRV ... Download FASTA
Job Typenormal
Job Expiry

Summary 

Top model
Image coloured by rainbow N → C terminus
Model dimensions (Å):X:54.765 Y:63.899 Z:66.496
Model (left) based on template c4ky0B_
Top template information
PDB header:transport protein, membrane protein
Chain: B: PDB Molecule:proton/glutamate symporter, sdf family;
PDBTitle: crystal structure of a substrate-free glutamate transporter homologue2 from thermococcus kodakarensis
Confidence and coverage
Confidence: 87.0% Coverage: 68%
277 residues ( 68% of your sequence) have been modelled with 87.0% confidence by the single highest scoring template.
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3D viewing
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Sequence analysis 

Download FASTA version

Secondary structure and disorder prediction [Show] 

Domain analysis [Show] 

Detailed template information [Hide] 

 

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Template Alignment Coverage3D Model Confidence
% i.d. Template Information
1c4ky0B_



87.0 13
PDB header:transport protein, membrane protein
Chain: B: PDB Molecule:proton/glutamate symporter, sdf family;
PDBTitle: crystal structure of a substrate-free glutamate transporter homologue2 from thermococcus kodakarensis
2c5l2bC_



75.1 14
PDB header:transport protein
Chain: C: PDB Molecule:nucleoside permease;
PDBTitle: structure of cntnw n149s, e332a in an outward-facing state
3c3tijA_



68.4 16
PDB header:membrane protein
Chain: A: PDB Molecule:nupc family protein;
PDBTitle: crystal structure of a concentrative nucleoside transporter from2 vibrio cholerae
4c3vu1A_



60.1 50
PDB header:transferase
Chain: A: PDB Molecule:putative uncharacterized protein ph0242;
PDBTitle: crystal structure of the c-terminal globular domain of2 oligosaccharyltransferase (phaglb-l, o74088_pyrho) from pyrococcus3 horikoshii
5c4n7wA_



58.4 13
PDB header:transport protein
Chain: A: PDB Molecule:transporter, sodium/bile acid symporter family;
PDBTitle: crystal structure of the sodium bile acid symporter from yersinia2 frederiksenii
6c6b2zf_



42.7 29
PDB header:membrane protein
Chain: F: PDB Molecule:atp synthase subunit c, mitochondrial;
PDBTitle: cryo-em structure of the dimeric fo region of yeast mitochondrial atp2 synthase
7c2xq2A_



42.6 13
PDB header:transport protein
Chain: A: PDB Molecule:sodium/glucose cotransporter;
PDBTitle: structure of the k294a mutant of vsglt
8c6b8ht_



40.7 29
PDB header:membrane protein
Chain: T: PDB Molecule:atp synthase subunit 9, mitochondrial;
PDBTitle: mosaic model of yeast mitochondrial atp synthase monomer
9c6gctA_



39.4 11
PDB header:membrane protein
Chain: A: PDB Molecule:neutral amino acid transporter b(0);
PDBTitle: cryo-em structure of the human neutral amino acid transporter asct2
10d2nwwa1



33.5 16
Fold:Proton glutamate symport protein
Superfamily:Proton glutamate symport protein
Family:Proton glutamate symport protein
11c5xbcB_



32.0 36
PDB header:hydrolase
Chain: B: PDB Molecule:nsp1 protein;
PDBTitle: crystal structure basis for pedv nsp1
12c1kn7A_



25.4 38
PDB header:membrane protein
Chain: A: PDB Molecule:voltage-gated potassium channel protein kv1.4;
PDBTitle: solution structure of the tandem inactivation domain2 (residues 1-75) of potassium channel rck4 (kv1.4)
13c2jmrA_



23.6 29
PDB header:cell adhesion
Chain: A: PDB Molecule:fimf;
PDBTitle: nmr structure of the e. coli type 1 pilus subunit fimf
14c3nk3C_



21.7 36
PDB header:cell adhesion
Chain: C: PDB Molecule:zona pellucida 3;
PDBTitle: crystal structure of full-length sperm receptor zp3 at 2.6 a2 resolution
15c2k2bA_



21.2 29
PDB header:transport protein
Chain: A: PDB Molecule:degenerin mec-4;
PDBTitle: sparse-constraint solution nmr structure of micelle-2 solublized cytosolic amino terminal domain of c. elegans3 mechanosensory ion channel subunit mec-4. new york4 consortium on membrane protein structure (nycomps) (casp5 target)
16c3nk4C_



21.0 38
PDB header:cell adhesion
Chain: C: PDB Molecule:zona pellucida 3;
PDBTitle: crystal structure of full-length sperm receptor zp3 at 2.0 a2 resolution
17c2iifA_



19.1 33
PDB header:recombination/dna
Chain: A: PDB Molecule:integration host factor;
PDBTitle: single chain integration host factor mutant protein (scihf2-k45ae) in2 complex with dna
18c2k74A_



17.2 21
PDB header:membrane protein, oxidoreductase
Chain: A: PDB Molecule:disulfide bond formation protein b;
PDBTitle: solution nmr structure of dsbb-ubiquinone complex
19d2r6gf1



14.8 14
Fold:MalF N-terminal region-like
Superfamily:MalF N-terminal region-like
Family:MalF N-terminal region-like
20c2gj0A_



13.5 27
PDB header:plant protein
Chain: A: PDB Molecule:cycloviolacin o14;
PDBTitle: cycloviolacin o14
21c6dhrA_



not modelled 13.5 29
PDB header:plant protein
Chain: A: PDB Molecule:rivi3;
PDBTitle: nmr solution structure of rivi3
22c2wpnB_



not modelled 13.4 17
PDB header:oxidoreductase
Chain: B: PDB Molecule:periplasmic [nifese] hydrogenase, large subunit,
PDBTitle: structure of the oxidised, as-isolated nifese hydrogenase from d.2 vulgaris hildenborough
23c1orxA_



not modelled 13.2 14
PDB header:antibiotic
Chain: A: PDB Molecule:kalata b1;
PDBTitle: solution structure of the acyclic permutant des-(24-28)-2 kalata b1.
24c2bbjB_



not modelled 12.3 14
PDB header:metal transport/membrane protein
Chain: B: PDB Molecule:divalent cation transport-related protein;
PDBTitle: crystal structure of the cora mg2+ transporter
25c2k7gA_



not modelled 12.3 29
PDB header:plant protein
Chain: A: PDB Molecule:varv peptide f;
PDBTitle: solution structure of varv f
26c3e4hA_



not modelled 12.2 29
PDB header:plant protein
Chain: A: PDB Molecule:varv peptide f;
PDBTitle: crystal structure of the cyclotide varv f
27c3wdoA_



not modelled 11.8 15
PDB header:transport protein
Chain: A: PDB Molecule:mfs transporter;
PDBTitle: structure of e. coli yajr transporter
28c2lamA_



not modelled 11.3 29
PDB header:antiviral protein
Chain: A: PDB Molecule:cyclotide cter m;
PDBTitle: three-dimensional structure of the cyclotide cter m
29c5y50A_



not modelled 11.1 11
PDB header:membrane protein
Chain: A: PDB Molecule:protein detoxification 14;
PDBTitle: crystal structure of eukaryotic mate transporter atdtx14
30c2yvxD_



not modelled 11.0 16
PDB header:transport protein
Chain: D: PDB Molecule:mg2+ transporter mgte;
PDBTitle: crystal structure of magnesium transporter mgte
31c2voyB_



not modelled 10.8 15
PDB header:hydrolase
Chain: B: PDB Molecule:sarcoplasmic/endoplasmic reticulum calcium atpase 1;
PDBTitle: cryoem model of copa, the copper transporting atpase from2 archaeoglobus fulgidus
32c1k48A_



not modelled 10.4 14
PDB header:plant protein
Chain: A: PDB Molecule:kalata b1;
PDBTitle: refined structure and disulfide pairing of the kalata b12 peptide
33c1jjzA_



not modelled 10.3 14
PDB header:plant protein
Chain: A: PDB Molecule:kalata b1;
PDBTitle: refined structure and disulfide pairing of the kalata b12 peptide
34c1n1uA_



not modelled 10.3 0
PDB header:antibiotic
Chain: A: PDB Molecule:kalata b1;
PDBTitle: nmr structure of [ala1,15]kalata b1
35d1n1ua_



not modelled 10.3 0
Fold:Knottins (small inhibitors, toxins, lectins)
Superfamily:Cyclotides
Family:Kalata B1
36d1pt4a_



not modelled 10.3 29
Fold:Knottins (small inhibitors, toxins, lectins)
Superfamily:Cyclotides
Family:Kalata B1
37c4ttnA_



not modelled 10.0 14
PDB header:plant protein
Chain: A: PDB Molecule:kalata-b1;
PDBTitle: quasi-racemic structure of [g6a]kalata b1
38c4ttoA_



not modelled 10.0 14
PDB header:plant protein
Chain: A: PDB Molecule:kalata-b1;
PDBTitle: quasi-racemic structure of [v25a] kalata b1
39c4ttmA_



not modelled 9.8 14
PDB header:plant protein
Chain: A: PDB Molecule:kalata-b1;
PDBTitle: racemic structure of kalata b1 (kb1)
40c2khbA_



not modelled 9.8 14
PDB header:antimicrobial protein
Chain: A: PDB Molecule:kalata-b1;
PDBTitle: solution structure of linear kalata b1 (loop 6)
41c2f2iA_



not modelled 9.8 14
PDB header:antimicrobial protein
Chain: A: PDB Molecule:kalata-b1;
PDBTitle: solution structure of [p20d,v21k]-kalata b1
42c6re80_



not modelled 9.8 35
PDB header:proton transport
Chain: 0: PDB Molecule:asa-10: polytomella f-atp synthase associated subunit 10;
PDBTitle: cryo-em structure of polytomella f-atp synthase, rotary substate 2d,2 composite map
43c2f2jA_



not modelled 9.5 14
PDB header:antimicrobial protein
Chain: A: PDB Molecule:kalata-b1;
PDBTitle: solution structure of [w19k, p20n, v21k]-kalata b1
44d1nb1a_



not modelled 9.5 14
Fold:Knottins (small inhibitors, toxins, lectins)
Superfamily:Cyclotides
Family:Kalata B1
45c1nb1A_



not modelled 9.5 14
PDB header:antibiotic
Chain: A: PDB Molecule:kalata b1;
PDBTitle: high resolution solution structure of kalata b1
46c6k1hE_



not modelled 9.2 15
PDB header:protein transport
Chain: E: PDB Molecule:pts mannose/fructose/sorbose transporter subunit iic;
PDBTitle: structure of membrane protein
47c2mn1A_



not modelled 9.1 9
PDB header:unknown function
Chain: A: PDB Molecule:kalata b1[w23ww];
PDBTitle: solution structure of kalata b1[w23ww]
48c4b4aA_



not modelled 9.1 17
PDB header:transport protein
Chain: A: PDB Molecule:sec-independent protein translocase protein tatc;
PDBTitle: structure of the tatc core of the twin arginine protein2 translocation system
49c2l69A_



not modelled 9.1 32
PDB header:de novo protein
Chain: A: PDB Molecule:rossmann 2x3 fold protein;
PDBTitle: solution nmr structure of de novo designed protein, p-loop ntpase2 fold, northeast structural genomics consortium target or28
50d1o9ga_



not modelled 9.0 14
Fold:S-adenosyl-L-methionine-dependent methyltransferases
Superfamily:S-adenosyl-L-methionine-dependent methyltransferases
Family:rRNA methyltransferase AviRa
51c2mfrA_



not modelled 7.9 30
PDB header:transferase
Chain: A: PDB Molecule:insulin receptor;
PDBTitle: solution structure of the transmembrane domain of the insulin receptor2 in micelles
52c6d79A_



not modelled 7.8 12
PDB header:transport protein
Chain: A: PDB Molecule:sulfate transporter cysz;
PDBTitle: structure of cysz, a sulfate permease from pseudomonas fragi
53c2fqaA_



not modelled 7.4 29
PDB header:plant protein
Chain: A: PDB Molecule:violacin 1;
PDBTitle: violacin a
54c3v8vB_



not modelled 7.4 19
PDB header:transferase
Chain: B: PDB Molecule:ribosomal rna large subunit methyltransferase l;
PDBTitle: crystal structure of bifunctional methyltransferase ycby (rlmlk) from2 escherichia coli, sam binding
55c1g5hA_



not modelled 7.3 33
PDB header:dna binding protein
Chain: A: PDB Molecule:mitochondrial dna polymerase accessory subunit;
PDBTitle: crystal structure of the accessory subunit of murine mitochondrial2 polymerase gamma
56c2m9oA_



not modelled 7.3 14
PDB header:plant protein
Chain: A: PDB Molecule:kalata-b7;
PDBTitle: solution structure of kalata b7
57c4eq7B_



not modelled 7.1 38
PDB header:transport protein
Chain: B: PDB Molecule:abc transporter, substrate binding protein (polyamine);
PDBTitle: structure of atu4243-gaba receptor
58c2kukA_



not modelled 6.5 9
PDB header:antiviral protein
Chain: A: PDB Molecule:leaf cyclotide 2;
PDBTitle: solution structure of vhl-2
59d1wuil1



not modelled 6.4 0
Fold:HydB/Nqo4-like
Superfamily:HydB/Nqo4-like
Family:Nickel-iron hydrogenase, large subunit
60c2n2uA_



not modelled 6.2 47
PDB header:unknown function, structural genomics
Chain: A: PDB Molecule:or358;
PDBTitle: solution nmr structure of de novo designed ferredoxin fold protein2 sfr3, northeast structural genomics consortium (nesg) target or358
61c2fqcA_



not modelled 5.5 21
PDB header:toxin
Chain: A: PDB Molecule:conotoxin pl14a;
PDBTitle: solution structure of conotoxin pl14a
62c3ianA_



not modelled 5.3 33
PDB header:hydrolase
Chain: A: PDB Molecule:chitinase;
PDBTitle: crystal structure of a chitinase from lactococcus lactis subsp. lactis
63c2kvoA_



not modelled 5.1 23
PDB header:photosynthesis
Chain: A: PDB Molecule:photosystem ii reaction center psb28 protein;
PDBTitle: solution nmr structure of photosystem ii reaction center psb28 protein2 from synechocystis sp.(strain pcc 6803), northeast structural3 genomics consortium target sgr171
64c3ldgA_



not modelled 5.0 5
PDB header:transferase
Chain: A: PDB Molecule:putative uncharacterized protein smu.472;
PDBTitle: crystal structure of smu.472, a putative methyltransferase complexed2 with sah

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Transmembrane helix prediction 

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