Phyre Home Retrieve Phyre Job Id
Emailmdejesus@rockefeller.edu
DescriptionRVBD2967c_(pca)_3319673_3323056
DateThu Aug 8 16:20:12 BST 2019
Unique Job ID93abd0eb291eb8ac
SequenceVFSKVLVANR ... Download FASTA
Job Typenormal
Job Expiry

Summary 

Top model
Image coloured by rainbow N → C terminus
Model dimensions (Å):X:97.867 Y:126.255 Z:101.839
Model (left) based on template c5vz0D_
Top template information
PDB header:ligase
Chain: D: PDB Molecule:pyruvate carboxylase;
PDBTitle: crystal structure of lactococcus lactis pyruvate carboxylase g746a2 mutant in complex with cyclic-di-amp
Confidence and coverage
Confidence:100.0% Coverage: 99%
1114 residues ( 99% of your sequence) have been modelled with 100.0% confidence by the single highest scoring template.
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Sequence analysis 

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Secondary structure and disorder prediction [Show] 

Domain analysis [Show] 

Detailed template information [Hide] 

 

#
Template Alignment Coverage3D Model Confidence
% i.d. Template Information
1c5vz0D_
100.0 45
PDB header:ligase
Chain: D: PDB Molecule:pyruvate carboxylase;
PDBTitle: crystal structure of lactococcus lactis pyruvate carboxylase g746a2 mutant in complex with cyclic-di-amp
2c3hblA_
100.0 46
PDB header:ligase
Chain: A: PDB Molecule:pyruvate carboxylase;
PDBTitle: crystal structure of s. aureus pyruvate carboxylase t908a mutant
3c4qskB_
100.0 47
PDB header:ligase
Chain: B: PDB Molecule:pyruvate carboxylase;
PDBTitle: crystal structure of l. monocytogenes pyruvate carboxylase in complex2 with cyclic-di-amp
4c3bg5B_
100.0 47
PDB header:ligase
Chain: B: PDB Molecule:pyruvate carboxylase;
PDBTitle: crystal structure of staphylococcus aureus pyruvate carboxylase
5c3tw6B_
100.0 49
PDB header:ligase/activator
Chain: B: PDB Molecule:pyruvate carboxylase protein;
PDBTitle: structure of rhizobium etli pyruvate carboxylase t882a with the2 allosteric activator, acetyl coenzyme-a
6c2qf7A_
100.0 48
PDB header:ligase
Chain: A: PDB Molecule:pyruvate carboxylase protein;
PDBTitle: crystal structure of a complete multifunctional pyruvate carboxylase2 from rhizobium etli
7c4hnvB_
100.0 47
PDB header:ligase
Chain: B: PDB Molecule:pyruvate carboxylase;
PDBTitle: crystal structure of r54e mutant of s. aureus pyruvate carboxylase
8c3bg5C_
100.0 47
PDB header:ligase
Chain: C: PDB Molecule:pyruvate carboxylase;
PDBTitle: crystal structure of staphylococcus aureus pyruvate carboxylase
9c4qslE_
100.0 47
PDB header:ligase
Chain: E: PDB Molecule:pyruvate carboxylase;
PDBTitle: crystal structure of listeria monocytogenes pyruvate carboxylase
10c4qslC_
100.0 47
PDB header:ligase
Chain: C: PDB Molecule:pyruvate carboxylase;
PDBTitle: crystal structure of listeria monocytogenes pyruvate carboxylase
11c3va7A_
100.0 23
PDB header:ligase
Chain: A: PDB Molecule:klla0e08119p;
PDBTitle: crystal structure of the kluyveromyces lactis urea carboxylase
12c5i8iD_
100.0 26
PDB header:hydrolase
Chain: D: PDB Molecule:urea amidolyase;
PDBTitle: crystal structure of the k. lactis urea amidolyase
13c3bg3A_
100.0 44
PDB header:ligase
Chain: A: PDB Molecule:pyruvate carboxylase, mitochondrial;
PDBTitle: crystal structure of human pyruvate carboxylase (missing the biotin2 carboxylase domain at the n-terminus)
14c5cslA_
100.0 36
PDB header:ligase
Chain: A: PDB Molecule:acetyl-coa carboxylase;
PDBTitle: crystal structure of the 500 kd yeast acetyl-coa carboxylase2 holoenzyme dimer
15c3bg3B_
100.0 44
PDB header:ligase
Chain: B: PDB Molecule:pyruvate carboxylase, mitochondrial;
PDBTitle: crystal structure of human pyruvate carboxylase (missing the biotin2 carboxylase domain at the n-terminus)
16c6g2dC_
100.0 36
PDB header:ligase
Chain: C: PDB Molecule:acetyl-coa carboxylase 1;
PDBTitle: citrate-induced acetyl-coa carboxylase (acc-cit) filament at 5.4 a2 resolution
17c5cskB_
100.0 35
PDB header:ligase
Chain: B: PDB Molecule:acetyl-coa carboxylase;
PDBTitle: crystal structure of yeast acetyl-coa carboxylase, unbiotinylated
18c5ks8D_
100.0 35
PDB header:ligase
Chain: D: PDB Molecule:pyruvate carboxylase subunit beta;
PDBTitle: crystal structure of two-subunit pyruvate carboxylase from2 methylobacillus flagellatus
19c4rcnA_
100.0 55
PDB header:ligase
Chain: A: PDB Molecule:long-chain acyl-coa carboxylase;
PDBTitle: structure and function of a single-chain, multi-domain long-chain2 acyl-coa carboxylase
20c3n6rK_
100.0 42
PDB header:ligase
Chain: K: PDB Molecule:propionyl-coa carboxylase, alpha subunit;
PDBTitle: crystal structure of the holoenzyme of propionyl-coa carboxylase (pcc)
21c3u9sA_
not modelled 100.0 49
PDB header:ligase
Chain: A: PDB Molecule:methylcrotonyl-coa carboxylase, alpha-subunit;
PDBTitle: crystal structure of p. aeruginosa 3-methylcrotonyl-coa carboxylase2 (mcc) 750 kd holoenzyme, coa complex
22c3u9sE_
not modelled 100.0 43
PDB header:ligase
Chain: E: PDB Molecule:methylcrotonyl-coa carboxylase, alpha-subunit;
PDBTitle: crystal structure of p. aeruginosa 3-methylcrotonyl-coa carboxylase2 (mcc) 750 kd holoenzyme, coa complex
23c1w96B_
not modelled 100.0 33
PDB header:ligase
Chain: B: PDB Molecule:acetyl-coenzyme a carboxylase;
PDBTitle: crystal structure of biotin carboxylase domain of acetyl-2 coenzyme a carboxylase from saccharomyces cerevisiae in3 complex with soraphen a
24c5ks8B_
not modelled 100.0 49
PDB header:ligase
Chain: B: PDB Molecule:pyruvate carboxylase subunit alpha;
PDBTitle: crystal structure of two-subunit pyruvate carboxylase from2 methylobacillus flagellatus
25c3u9sI_
not modelled 100.0 46
PDB header:ligase
Chain: I: PDB Molecule:methylcrotonyl-coa carboxylase, alpha-subunit;
PDBTitle: crystal structure of p. aeruginosa 3-methylcrotonyl-coa carboxylase2 (mcc) 750 kd holoenzyme, coa complex
26c2hjwA_
not modelled 100.0 34
PDB header:ligase
Chain: A: PDB Molecule:acetyl-coa carboxylase 2;
PDBTitle: crystal structure of the bc domain of acc2
27c2nx9B_
not modelled 100.0 38
PDB header:lyase
Chain: B: PDB Molecule:oxaloacetate decarboxylase 2, subunit alpha;
PDBTitle: crystal structure of the carboxyltransferase domain of the2 oxaloacetate decarboxylase na+ pump from vibrio cholerae
28c5h80A_
not modelled 100.0 43
PDB header:ligase
Chain: A: PDB Molecule:carboxylase;
PDBTitle: biotin carboxylase domain of single-chain bacterial carboxylase
29c1rr2A_
not modelled 100.0 35
PDB header:transferase
Chain: A: PDB Molecule:transcarboxylase 5s subunit;
PDBTitle: propionibacterium shermanii transcarboxylase 5s subunit bound to 2-2 ketobutyric acid
30c5ks8F_
not modelled 100.0 39
PDB header:ligase
Chain: F: PDB Molecule:pyruvate carboxylase subunit beta;
PDBTitle: crystal structure of two-subunit pyruvate carboxylase from2 methylobacillus flagellatus
31c1ulzA_
not modelled 100.0 45
PDB header:ligase
Chain: A: PDB Molecule:pyruvate carboxylase n-terminal domain;
PDBTitle: crystal structure of the biotin carboxylase subunit of pyruvate2 carboxylase
32c5mlkA_
not modelled 100.0 42
PDB header:ligase
Chain: A: PDB Molecule:acetyl-coa carboxylase;
PDBTitle: biotin dependent carboxylase acca3 dimer from mycobacterium2 tuberculosis (rv3285)
33c5mlkB_
not modelled 100.0 44
PDB header:ligase
Chain: B: PDB Molecule:acetyl-coa carboxylase;
PDBTitle: biotin dependent carboxylase acca3 dimer from mycobacterium2 tuberculosis (rv3285)
34c3ouzA_
not modelled 100.0 40
PDB header:ligase
Chain: A: PDB Molecule:biotin carboxylase;
PDBTitle: crystal structure of biotin carboxylase-adp complex from campylobacter2 jejuni
35c3jzfA_
not modelled 100.0 47
PDB header:ligase
Chain: A: PDB Molecule:biotin carboxylase;
PDBTitle: crystal structure of biotin carboxylase from e. coli in2 complex with benzimidazoles series
36c2dzdB_
not modelled 100.0 51
PDB header:ligase
Chain: B: PDB Molecule:pyruvate carboxylase;
PDBTitle: crystal structure of the biotin carboxylase domain of pyruvate2 carboxylase
37c3g8cB_
not modelled 100.0 45
PDB header:ligase
Chain: B: PDB Molecule:biotin carboxylase;
PDBTitle: crystal structure of biotin carboxylase in complex with biotin,2 bicarbonate, adp and mg ion
38c2vpqA_
not modelled 100.0 41
PDB header:ligase
Chain: A: PDB Molecule:acetyl-coa carboxylase;
PDBTitle: crystal structure of biotin carboxylase from s. aureus2 complexed with amppnp
39c2gpwC_
not modelled 100.0 45
PDB header:ligase
Chain: C: PDB Molecule:biotin carboxylase;
PDBTitle: crystal structure of the biotin carboxylase subunit, f363a2 mutant, of acetyl-coa carboxylase from escherichia coli.
40c3gidB_
not modelled 100.0 33
PDB header:ligase
Chain: B: PDB Molecule:acetyl-coa carboxylase 2;
PDBTitle: the biotin carboxylase (bc) domain of human acetyl-coa carboxylase 22 (acc2) in complex with soraphen a
41c1m6vE_
not modelled 100.0 22
PDB header:ligase
Chain: E: PDB Molecule:carbamoyl phosphate synthetase large chain;
PDBTitle: crystal structure of the g359f (small subunit) point mutant of2 carbamoyl phosphate synthetase
42c1kjjA_
not modelled 100.0 20
PDB header:transferase
Chain: A: PDB Molecule:phosphoribosylglycinamide formyltransferase 2;
PDBTitle: crystal structure of glycniamide ribonucleotide transformylase in2 complex with mg-atp-gamma-s
43c5douC_
not modelled 100.0 20
PDB header:ligase
Chain: C: PDB Molecule:carbamoyl-phosphate synthase [ammonia], mitochondrial;
PDBTitle: crystal structure of human carbamoyl phosphate synthetase i (cps1),2 ligand-bound form
44d1w96a3
not modelled 100.0 37
Fold:ATP-grasp
Superfamily:Glutathione synthetase ATP-binding domain-like
Family:BC ATP-binding domain-like
45c2xd4A_
not modelled 100.0 17
PDB header:ligase
Chain: A: PDB Molecule:phosphoribosylamine--glycine ligase;
PDBTitle: nucleotide-bound structures of bacillus subtilis glycinamide2 ribonucleotide synthetase
46c3uvzB_
not modelled 100.0 19
PDB header:lyase
Chain: B: PDB Molecule:phosphoribosylaminoimidazole carboxylase, atpase subunit;
PDBTitle: crystal structure of phosphoribosylaminoimidazole carboxylase, atpase2 subunit from burkholderia ambifaria
47c3lp8A_
not modelled 100.0 14
PDB header:ligase
Chain: A: PDB Molecule:phosphoribosylamine-glycine ligase;
PDBTitle: crystal structure of phosphoribosylamine-glycine ligase from2 ehrlichia chaffeensis
48c2yyaB_
not modelled 100.0 17
PDB header:ligase
Chain: B: PDB Molecule:phosphoribosylamine--glycine ligase;
PDBTitle: crystal structure of gar synthetase from aquifex aeolicus
49c3q2oB_
not modelled 100.0 19
PDB header:lyase
Chain: B: PDB Molecule:phosphoribosylaminoimidazole carboxylase, atpase subunit;
PDBTitle: crystal structure of purk: n5-carboxyaminoimidazole ribonucleotide2 synthetase
50d1rqba2
not modelled 100.0 37
Fold:TIM beta/alpha-barrel
Superfamily:Aldolase
Family:HMGL-like
51c2qk4A_
not modelled 100.0 15
PDB header:ligase
Chain: A: PDB Molecule:trifunctional purine biosynthetic protein adenosine-3;
PDBTitle: human glycinamide ribonucleotide synthetase
52c2dwcB_
not modelled 100.0 20
PDB header:transferase
Chain: B: PDB Molecule:433aa long hypothetical phosphoribosylglycinamide formyl
PDBTitle: crystal structure of probable phosphoribosylglycinamide formyl2 transferase from pyrococcus horikoshii ot3 complexed with adp
53c4dimA_
not modelled 100.0 16
PDB header:ligase
Chain: A: PDB Molecule:phosphoribosylglycinamide synthetase;
PDBTitle: crystal structure of phosphoribosylglycinamide synthetase from2 anaerococcus prevotii
54c4mamB_
not modelled 100.0 19
PDB header:lyase
Chain: B: PDB Molecule:phosphoribosylaminoimidazole carboxylase, atpase subunit;
PDBTitle: the crystal structure of phosphoribosylaminoimidazole carboxylase2 atpase subunit of francisella tularensis subsp. tularensis schu s4 in3 complex with an adp analog, amp-cp
55c2ip4A_
not modelled 100.0 21
PDB header:ligase
Chain: A: PDB Molecule:phosphoribosylamine--glycine ligase;
PDBTitle: crystal structure of glycinamide ribonucleotide synthetase from2 thermus thermophilus hb8
56c3orqA_
not modelled 100.0 15
PDB header:ligase,biosynthetic protein
Chain: A: PDB Molecule:n5-carboxyaminoimidazole ribonucleotide synthetase;
PDBTitle: crystal structure of n5-carboxyaminoimidazole synthetase from2 staphylococcus aureus complexed with adp
57c3wvqA_
not modelled 100.0 20
PDB header:biosynthetic protein
Chain: A: PDB Molecule:pgm1;
PDBTitle: structure of atp grasp protein
58c3ax6C_
not modelled 100.0 21
PDB header:ligase
Chain: C: PDB Molecule:phosphoribosylaminoimidazole carboxylase, atpase subunit;
PDBTitle: crystal structure of n5-carboxyaminoimidazole ribonucleotide2 synthetase from thermotoga maritima
59c1vkzA_
not modelled 100.0 15
PDB header:ligase
Chain: A: PDB Molecule:phosphoribosylamine--glycine ligase;
PDBTitle: crystal structure of phosphoribosylamine--glycine ligase (tm1250) from2 thermotoga maritima at 2.30 a resolution
60c4ffnA_
not modelled 100.0 16
PDB header:ligase/substrate
Chain: A: PDB Molecule:pylc;
PDBTitle: pylc in complex with d-ornithine and amppnp
61c3k5iB_
not modelled 100.0 19
PDB header:lyase
Chain: B: PDB Molecule:phosphoribosyl-aminoimidazole carboxylase;
PDBTitle: crystal structure of n5-carboxyaminoimidazole synthase from2 aspergillus clavatus in complex with adp and 5-aminoimadazole3 ribonucleotide
62c2ys6A_
not modelled 100.0 19
PDB header:ligase
Chain: A: PDB Molecule:phosphoribosylglycinamide synthetase;
PDBTitle: crystal structure of gar synthetase from geobacillus kaustophilus
63c1gsoA_
not modelled 100.0 17
PDB header:ligase
Chain: A: PDB Molecule:protein (glycinamide ribonucleotide synthetase);
PDBTitle: glycinamide ribonucleotide synthetase (gar-syn) from e.2 coli.
64c3ivuB_
not modelled 100.0 20
PDB header:transferase
Chain: B: PDB Molecule:homocitrate synthase, mitochondrial;
PDBTitle: homocitrate synthase lys4 bound to 2-og
65c3votB_
not modelled 100.0 18
PDB header:ligase
Chain: B: PDB Molecule:l-amino acid ligase, bl00235;
PDBTitle: crystal structure of l-amino acid ligase from bacillus licheniformis
66c4wd3B_
not modelled 100.0 14
PDB header:ligase
Chain: B: PDB Molecule:l-amino acid ligase;
PDBTitle: crystal structure of an l-amino acid ligase riza
67c1nvmG_
not modelled 100.0 16
PDB header:lyase/oxidoreductase
Chain: G: PDB Molecule:4-hydroxy-2-oxovalerate aldolase;
PDBTitle: crystal structure of a bifunctional aldolase-dehydrogenase :2 sequestering a reactive and volatile intermediate
68c3etjB_
not modelled 100.0 14
PDB header:lyase
Chain: B: PDB Molecule:phosphoribosylaminoimidazole carboxylase atpase
PDBTitle: crystal structure e. coli purk in complex with mg, adp, and2 pi
69c3vmmA_
not modelled 100.0 16
PDB header:ligase
Chain: A: PDB Molecule:alanine-anticapsin ligase bacd;
PDBTitle: crystal structure of bacd, an l-amino acid dipeptide ligase from2 bacillus subtilis
70c3aw8A_
not modelled 100.0 22
PDB header:ligase
Chain: A: PDB Molecule:phosphoribosylaminoimidazole carboxylase, atpase subunit;
PDBTitle: crystal structure of n5-carboxyaminoimidazole ribonucleotide2 synthetase from thermus thermophilus hb8
71c6e1jB_
not modelled 100.0 20
PDB header:plant protein
Chain: B: PDB Molecule:2-isopropylmalate synthase, a genome specific 1;
PDBTitle: crystal structure of methylthioalkylmalate synthase (bjumam1.1) from2 brassica juncea
72c4jn6C_
not modelled 100.0 19
PDB header:lyase/oxidoreductase
Chain: C: PDB Molecule:4-hydroxy-2-oxovalerate aldolase;
PDBTitle: crystal structure of the aldolase-dehydrogenase complex from2 mycobacterium tuberculosis hrv37
73c5vevB_
not modelled 100.0 16
PDB header:ligase
Chain: B: PDB Molecule:phosphoribosylamine--glycine ligase;
PDBTitle: crystal structure of phosphoribosylamine-glycine ligase from neisseria2 gonorrhoeae
74c5dotA_
not modelled 100.0 19
PDB header:ligase
Chain: A: PDB Molecule:carbamoyl-phosphate synthase [ammonia], mitochondrial;
PDBTitle: crystal structure of human carbamoyl phosphate synthetase i (cps1),2 apo form
75c4lrtC_
not modelled 100.0 21
PDB header:lyase/oxidoreductase
Chain: C: PDB Molecule:4-hydroxy-2-oxovalerate aldolase;
PDBTitle: crystal and solution structures of the bifunctional enzyme2 (aldolase/aldehyde dehydrogenase) from thermomonospora curvata,3 reveal a cofactor-binding domain motion during nad+ and coa4 accommodation whithin the shared cofactor-binding site
76d1a9xa5
not modelled 100.0 21
Fold:ATP-grasp
Superfamily:Glutathione synthetase ATP-binding domain-like
Family:BC ATP-binding domain-like
77c4ov9A_
not modelled 100.0 17
PDB header:transferase
Chain: A: PDB Molecule:isopropylmalate synthase;
PDBTitle: structure of isopropylmalate synthase binding with alpha-2 isopropylmalate
78c2z04A_
not modelled 100.0 21
PDB header:lyase
Chain: A: PDB Molecule:phosphoribosylaminoimidazole carboxylase atpase
PDBTitle: crystal structure of phosphoribosylaminoimidazole2 carboxylase atpase subunit from aquifex aeolicus
79d1nvma2
not modelled 100.0 16
Fold:TIM beta/alpha-barrel
Superfamily:Aldolase
Family:HMGL-like
80c3rmjB_
not modelled 100.0 18
PDB header:transferase
Chain: B: PDB Molecule:2-isopropylmalate synthase;
PDBTitle: crystal structure of truncated alpha-isopropylmalate synthase from2 neisseria meningitidis
81d1ulza1
not modelled 100.0 37
Fold:Barrel-sandwich hybrid
Superfamily:Rudiment single hybrid motif
Family:BC C-terminal domain-like
82c3bleA_
not modelled 100.0 16
PDB header:transferase
Chain: A: PDB Molecule:citramalate synthase from leptospira interrogans;
PDBTitle: crystal structure of the catalytic domain of licms in complexed with2 malonate
83c1ydoC_
not modelled 100.0 21
PDB header:lyase
Chain: C: PDB Molecule:hmg-coa lyase;
PDBTitle: crystal structure of the bacillis subtilis hmg-coa lyase, northeast2 structural genomics target sr181.
84c2ftpA_
not modelled 100.0 22
PDB header:lyase
Chain: A: PDB Molecule:hydroxymethylglutaryl-coa lyase;
PDBTitle: crystal structure of hydroxymethylglutaryl-coa lyase from pseudomonas2 aeruginosa
85c1ydnA_
not modelled 100.0 19
PDB header:lyase
Chain: A: PDB Molecule:hydroxymethylglutaryl-coa lyase;
PDBTitle: crystal structure of the hmg-coa lyase from brucella melitensis,2 northeast structural genomics target lr35.
86c2cw6B_
not modelled 100.0 21
PDB header:lyase
Chain: B: PDB Molecule:hydroxymethylglutaryl-coa lyase, mitochondrial;
PDBTitle: crystal structure of human hmg-coa lyase: insights into2 catalysis and the molecular basis for3 hydroxymethylglutaric aciduria
87d2j9ga1
not modelled 100.0 34
Fold:Barrel-sandwich hybrid
Superfamily:Rudiment single hybrid motif
Family:BC C-terminal domain-like
88c1sr9A_
not modelled 100.0 14
PDB header:transferase
Chain: A: PDB Molecule:2-isopropylmalate synthase;
PDBTitle: crystal structure of leua from mycobacterium tuberculosis
89c3a9iA_
not modelled 100.0 18
PDB header:transferase/transferase inhibitor
Chain: A: PDB Molecule:homocitrate synthase;
PDBTitle: crystal structure of homocitrate synthase from thermus thermophilus2 complexed with lys
90c3ewbX_
not modelled 100.0 21
PDB header:transferase
Chain: X: PDB Molecule:2-isopropylmalate synthase;
PDBTitle: crystal structure of n-terminal domain of putative 2-isopropylmalate2 synthase from listeria monocytogenes
91c3eegB_
not modelled 100.0 20
PDB header:transferase
Chain: B: PDB Molecule:2-isopropylmalate synthase;
PDBTitle: crystal structure of a 2-isopropylmalate synthase from2 cytophaga hutchinsonii
92c2zyfA_
not modelled 100.0 18
PDB header:transferase
Chain: A: PDB Molecule:homocitrate synthase;
PDBTitle: crystal structure of homocitrate synthase from thermus thermophilus2 complexed with magnesuim ion and alpha-ketoglutarate
93d1sr9a2
not modelled 100.0 14
Fold:TIM beta/alpha-barrel
Superfamily:Aldolase
Family:HMGL-like
94c1ehiB_
not modelled 100.0 19
PDB header:ligase
Chain: B: PDB Molecule:d-alanine:d-lactate ligase;
PDBTitle: d-alanine:d-lactate ligase (lmddl2) of vancomycin-resistant2 leuconostoc mesenteroides
95c4fu0B_
not modelled 100.0 22
PDB header:ligase
Chain: B: PDB Molecule:d-alanine--d-alanine ligase 7;
PDBTitle: crystal structure of vang d-ala:d-ser ligase from enterococcus2 faecalis
96c2r85B_
not modelled 100.0 14
PDB header:unknown function
Chain: B: PDB Molecule:purp protein pf1517;
PDBTitle: crystal structure of purp from pyrococcus furiosus complexed with amp
97c3i12A_
not modelled 100.0 19
PDB header:ligase
Chain: A: PDB Molecule:d-alanine-d-alanine ligase a;
PDBTitle: the crystal structure of the d-alanyl-alanine synthetase a from2 salmonella enterica subsp. enterica serovar typhimurium str. lt2
98d1rqba1
not modelled 100.0 28
Fold:RuvA C-terminal domain-like
Superfamily:post-HMGL domain-like
Family:Conserved carboxylase domain
99c3dxiB_
not modelled 100.0 14
PDB header:structural genomics, unknown function
Chain: B: PDB Molecule:putative aldolase;
PDBTitle: crystal structure of the n-terminal domain of a putative2 aldolase (bvu_2661) from bacteroides vulgatus
100c3hpxB_
not modelled 100.0 17
PDB header:transferase
Chain: B: PDB Molecule:2-isopropylmalate synthase;
PDBTitle: crystal structure of mycobacterium tuberculosis leua active site2 domain 1-425 (truncation mutant delta:426-644)
101d1w96a1
not modelled 100.0 28
Fold:Barrel-sandwich hybrid
Superfamily:Rudiment single hybrid motif
Family:BC C-terminal domain-like
102c2i80B_
not modelled 100.0 19
PDB header:ligase
Chain: B: PDB Molecule:d-alanine-d-alanine ligase;
PDBTitle: allosteric inhibition of staphylococcus aureus d-alanine:d-alanine2 ligase revealed by crystallographic studies
103c2dlnA_
not modelled 100.0 21
PDB header:ligase(peptidoglycan synthesis)
Chain: A: PDB Molecule:d-alanine--d-alanine ligase;
PDBTitle: vancomycin resistance: structure of d-alanine:d-alanine ligase at 2.32 angstroms resolution
104d1ulza3
not modelled 100.0 46
Fold:ATP-grasp
Superfamily:Glutathione synthetase ATP-binding domain-like
Family:BC ATP-binding domain-like
105d1ulza2
not modelled 100.0 50
Fold:PreATP-grasp domain
Superfamily:PreATP-grasp domain
Family:BC N-terminal domain-like
106c3lwbA_
not modelled 100.0 22
PDB header:ligase
Chain: A: PDB Molecule:d-alanine--d-alanine ligase;
PDBTitle: crystal structure of apo d-alanine:d-alanine ligase (ddl) from2 mycobacterium tuberculosis
107d2j9ga3
not modelled 100.0 49
Fold:ATP-grasp
Superfamily:Glutathione synthetase ATP-binding domain-like
Family:BC ATP-binding domain-like
108c6dgiA_
not modelled 100.0 19
PDB header:ligase
Chain: A: PDB Molecule:d-alanine--d-alanine ligase;
PDBTitle: the crystal structure of d-alanyl-alanine synthetase a from vibrio2 cholerae o1 biovar eltor str. n16961
109d2j9ga2
not modelled 100.0 47
Fold:PreATP-grasp domain
Superfamily:PreATP-grasp domain
Family:BC N-terminal domain-like
110c1e4eB_
not modelled 100.0 20
PDB header:ligase
Chain: B: PDB Molecule:vancomycin/teicoplanin a-type resistance protein vana;
PDBTitle: d-alanyl-d-lacate ligase
111c3e5nA_
not modelled 100.0 22
PDB header:ligase
Chain: A: PDB Molecule:d-alanine-d-alanine ligase a;
PDBTitle: crystal strucutre of d-alanine-d-alanine ligase from2 xanthomonas oryzae pv. oryzae kacc10331
112c4egqD_
not modelled 100.0 20
PDB header:ligase
Chain: D: PDB Molecule:d-alanine--d-alanine ligase;
PDBTitle: crystal structure of d-alanine-d-alanine ligase b from burkholderia2 pseudomallei
113c2pn1A_
not modelled 100.0 16
PDB header:ligase
Chain: A: PDB Molecule:carbamoylphosphate synthase large subunit;
PDBTitle: crystal structure of carbamoylphosphate synthase large subunit (split2 gene in mj) (zp_00538348.1) from exiguobacterium sp. 255-15 at 2.00 a3 resolution
114d1w96a2
not modelled 100.0 35
Fold:PreATP-grasp domain
Superfamily:PreATP-grasp domain
Family:BC N-terminal domain-like
115c3k3pA_
not modelled 100.0 20
PDB header:ligase
Chain: A: PDB Molecule:d-alanine--d-alanine ligase;
PDBTitle: crystal structure of the apo form of d-alanine:d-alanine ligase (ddl)2 from streptococcus mutans
116d1w96c1
not modelled 100.0 28
Fold:Barrel-sandwich hybrid
Superfamily:Rudiment single hybrid motif
Family:BC C-terminal domain-like
117c2zdqA_
not modelled 100.0 22
PDB header:ligase
Chain: A: PDB Molecule:d-alanine--d-alanine ligase;
PDBTitle: crystal structure of d-alanine:d-alanine ligase with atp2 and d-alanine:d-alanine from thermus thermophius hb8
118d1a9xa6
not modelled 100.0 21
Fold:ATP-grasp
Superfamily:Glutathione synthetase ATP-binding domain-like
Family:BC ATP-binding domain-like
119c3se7A_
not modelled 100.0 20
PDB header:ligase
Chain: A: PDB Molecule:vana;
PDBTitle: ancient vana
120c2pvpB_
not modelled 100.0 15
PDB header:ligase
Chain: B: PDB Molecule:d-alanine-d-alanine ligase;
PDBTitle: crystal structure of d-alanine-d-alanine ligase from helicobacter2 pylori

Binding site prediction 

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If you want to predict binding sites, please manually submit your model of choice to 3DLigandSite