Phyre Home Retrieve Phyre Job Id
Emailmdejesus@rockefeller.edu
DescriptionRVBD2968c_(-)_3323081_3323713
DateThu Aug 8 16:20:13 BST 2019
Unique Job IDf935398aef9cfa1c
SequenceVVAARPAERS ... Download FASTA
Job Typenormal
Job Expiry

Summary 

Top model
Image coloured by rainbow N → C terminus
Model dimensions (Å):X:53.028 Y:51.353 Z:41.678
Model (left) based on template c3kp9A_
Top template information
PDB header:blood coagulation,oxidoreductase
Chain: A: PDB Molecule:vkorc1/thioredoxin domain protein;
PDBTitle: structure of a bacterial homolog of vitamin k epoxide reductase
Confidence and coverage
Confidence:100.0% Coverage: 75%
157 residues ( 75% of your sequence) have been modelled with 100.0% confidence by the single highest scoring template.
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Sequence analysis 

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Secondary structure and disorder prediction [Show] 

Domain analysis [Show] 

Detailed template information [Hide] 

 

#
Template Alignment Coverage3D Model Confidence
% i.d. Template Information
1c3kp9A_



100.0 23
PDB header:blood coagulation,oxidoreductase
Chain: A: PDB Molecule:vkorc1/thioredoxin domain protein;
PDBTitle: structure of a bacterial homolog of vitamin k epoxide reductase
2c2k74A_



93.4 24
PDB header:membrane protein, oxidoreductase
Chain: A: PDB Molecule:disulfide bond formation protein b;
PDBTitle: solution nmr structure of dsbb-ubiquinone complex
3c5ir6A_



82.9 13
PDB header:oxidoreductase
Chain: A: PDB Molecule:bd-type quinol oxidase subunit i;
PDBTitle: the structure of bd oxidase from geobacillus thermodenitrificans
4c3e9jC_



70.6 13
PDB header:oxidoreductase
Chain: C: PDB Molecule:thiol/disulfide oxidoreductase dsbb;
PDBTitle: structure of the charge-transfer intermediate of the2 transmembrane redox catalyst dsbb
5d2hi7b1



64.4 16
Fold:Bromodomain-like
Superfamily:DsbB-like
Family:DsbB-like
6c5y7iB_



30.3 38
PDB header:transport protein
Chain: B: PDB Molecule:chloride intracellular channel protein 2;
PDBTitle: structure of tilapia fish clic2
7c2voyG_



20.7 20
PDB header:hydrolase
Chain: G: PDB Molecule:sarcoplasmic/endoplasmic reticulum calcium atpase 1;
PDBTitle: cryoem model of copa, the copper transporting atpase from2 archaeoglobus fulgidus
8c2n1pA_



17.8 28
PDB header:viral protein
Chain: A: PDB Molecule:non-structural protein 5b, ns5b;
PDBTitle: structure of the c-terminal membrane domain of hcv ns5b protein
9d1v54j_



17.0 6
Fold:Single transmembrane helix
Superfamily:Mitochondrial cytochrome c oxidase subunit VIIa
Family:Mitochondrial cytochrome c oxidase subunit VIIa
10d2dlka1



14.9 31
Fold:beta-beta-alpha zinc fingers
Superfamily:beta-beta-alpha zinc fingers
Family:Classic zinc finger, C2H2
11c6f46A_



14.3 32
PDB header:apoptosis
Chain: A: PDB Molecule:bcl-2-like protein 1;
PDBTitle: structure of the transmembrane helix of bclxl in phospholipid2 nanodiscs
12d1wjpa2



14.1 83
Fold:beta-beta-alpha zinc fingers
Superfamily:beta-beta-alpha zinc fingers
Family:Classic zinc finger, C2H2
13c5hfiA_



11.1 60
PDB header:oxidoreductase
Chain: A: PDB Molecule:uncharacterized protein, cytosolic disulfide reductase
PDBTitle: cytosolic disulfide reductase dsbm from pseudomonas aeruginosa with2 gsh
14c2y69W_



10.9 6
PDB header:electron transport
Chain: W: PDB Molecule:cytochrome c oxidase polypeptide 7a1;
PDBTitle: bovine heart cytochrome c oxidase re-refined with molecular oxygen
15c5z62J_



10.7 6
PDB header:electron transport
Chain: J: PDB Molecule:cytochrome c oxidase subunit 7a2, mitochondrial;
PDBTitle: structure of human cytochrome c oxidase
16c6ithA_



10.1 22
PDB header:membrane protein
Chain: A: PDB Molecule:syndecan-2;
PDBTitle: structure of the transmembrane domain of syndecan 2 in micelles
17c2k9hA_



9.3 100
PDB header:metal binding protein
Chain: A: PDB Molecule:glycoprotein;
PDBTitle: the hantavirus glycoprotein g1 tail contains a dual cchc-2 type classical zinc fingers
18c6hwhX_



9.1 9
PDB header:electron transport
Chain: X: PDB Molecule:cytochrome c oxidase polypeptide 4;
PDBTitle: structure of a functional obligate respiratory supercomplex from2 mycobacterium smegmatis
19c3kzqE_



8.9 40
PDB header:structural genomics, unknown function
Chain: E: PDB Molecule:putative uncharacterized protein vp2116;
PDBTitle: the crystal structure of the protein with unknown function from vibrio2 parahaemolyticus rimd 2210633
20c2in3A_



8.8 40
PDB header:isomerase
Chain: A: PDB Molecule:hypothetical protein;
PDBTitle: crystal structure of a putative protein disulfide isomerase from2 nitrosomonas europaea
21c3jcuw_



not modelled 8.7 57
PDB header:membrane protein
Chain: W: PDB Molecule:photosystem ii reaction center w protein, chloroplastic;
PDBTitle: cryo-em structure of spinach psii-lhcii supercomplex at 3.2 angstrom2 resolution
22d2o4da1



not modelled 8.7 44
Fold:AhpD-like
Superfamily:AhpD-like
Family:Atu0492-like
23c4npbA_



not modelled 8.4 75
PDB header:isomerase
Chain: A: PDB Molecule:protein disulfide isomerase ii;
PDBTitle: the crystal structure of thiol:disulfide interchange protein dsbc from2 yersinia pestis co92
24c3nznA_



not modelled 8.2 50
PDB header:oxidoreductase
Chain: A: PDB Molecule:glutaredoxin;
PDBTitle: the crystal structure of the glutaredoxin from methanosarcina mazei2 go1
25d1abaa_



not modelled 8.1 50
Fold:Thioredoxin fold
Superfamily:Thioredoxin-like
Family:Thioltransferase
26c6ghbB_



not modelled 7.6 80
PDB header:protein binding
Chain: B: PDB Molecule:upf0413 protein gk0824;
PDBTitle: crystal structure of spx in complex with yjbh (oxidized)
27d1kqpa_



not modelled 7.3 17
Fold:Adenine nucleotide alpha hydrolase-like
Superfamily:Adenine nucleotide alpha hydrolases-like
Family:N-type ATP pyrophosphatases
28c1t3bA_



not modelled 7.3 75
PDB header:isomerase
Chain: A: PDB Molecule:thiol:disulfide interchange protein dsbc;
PDBTitle: x-ray structure of dsbc from haemophilus influenzae
29c3bbyA_



not modelled 7.3 23
PDB header:transferase
Chain: A: PDB Molecule:uncharacterized gst-like protein yfcf;
PDBTitle: crystal structure of glutathione s-transferase (np_416804.1) from2 escherichia coli k12 at 1.85 a resolution
30c1jzdA_



not modelled 7.3 50
PDB header:oxidoreductase
Chain: A: PDB Molecule:thiol:disulfide interchange protein dsbc;
PDBTitle: dsbc-dsbdalpha complex
31c2l7xA_



not modelled 7.3 80
PDB header:viral protein
Chain: A: PDB Molecule:envelope glycoprotein;
PDBTitle: crimean congo hemorrhagic fever gn zinc finger
32c5cbfA_



not modelled 7.2 15
PDB header:transport protein
Chain: A: PDB Molecule:ion transport 2 domain protein;
PDBTitle: structural and functional characterization of a calcium-activated2 cation channel from tsukamurella paurometabola
33d1twfj_



not modelled 7.1 38
Fold:DNA/RNA-binding 3-helical bundle
Superfamily:RNA polymerase subunit RPB10
Family:RNA polymerase subunit RPB10
34c2elpA_



not modelled 7.1 100
PDB header:transcription
Chain: A: PDB Molecule:zinc finger protein 406;
PDBTitle: solution structure of the 13th c2h2 zinc finger of human2 zinc finger protein 406
35c2kb1A_



not modelled 6.9 16
PDB header:membrane protein
Chain: A: PDB Molecule:wsk3;
PDBTitle: nmr studies of a channel protein without membrane:2 structure and dynamics of water-solubilized kcsa
36c2jz8A_



not modelled 6.8 57
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:uncharacterized protein bh09830;
PDBTitle: solution nmr structure of bh09830 from bartonella henselae2 modeled with one zn+2 bound. northeast structural genomics3 consortium target bnr55
37c3lgcA_



not modelled 6.8 100
PDB header:unknown function
Chain: A: PDB Molecule:glutaredoxin 1;
PDBTitle: crystal structure of glutaredoxin 1 from francisella tularensis
38c3mjhD_



not modelled 6.6 63
PDB header:protein transport
Chain: D: PDB Molecule:early endosome antigen 1;
PDBTitle: crystal structure of human rab5a in complex with the c2h2 zinc finger2 of eea1
39c3gv1A_



not modelled 6.5 75
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:disulfide interchange protein;
PDBTitle: crystal structure of disulfide interchange protein from neisseria2 gonorrhoeae
40c4q16C_



not modelled 6.5 13
PDB header:ligase
Chain: C: PDB Molecule:nh(3)-dependent nad(+) synthetase;
PDBTitle: structure of nad+ synthetase from deinococcus radiodurans
41c4ml1D_



not modelled 6.4 50
PDB header:isomerase
Chain: D: PDB Molecule:dsbp;
PDBTitle: disulfide isomerase (dsbp) from multidrug resistance inca/c2 transferable plasmid in oxidized state (p212121 space group)
42c2pbzC_



not modelled 6.2 15
PDB header:ligase
Chain: C: PDB Molecule:hypothetical protein;
PDBTitle: crystal structure of an imp biosynthesis protein purp from2 thermococcus kodakaraensis
43c2lorA_



not modelled 6.2 24
PDB header:membrane protein
Chain: A: PDB Molecule:transmembrane protein 141;
PDBTitle: backbone structure of human membrane protein tmem141
44c1v57A_



not modelled 6.0 100
PDB header:isomerase
Chain: A: PDB Molecule:thiol:disulfide interchange protein dsbg;
PDBTitle: crystal structure of the disulfide bond isomerase dsbg
45d1t3ba1



not modelled 5.9 75
Fold:Thioredoxin fold
Superfamily:Thioredoxin-like
Family:DsbC/DsbG C-terminal domain-like
46c4pwoA_



not modelled 5.9 75
PDB header:structural genomics
Chain: A: PDB Molecule:dsba;
PDBTitle: crystal structure of dsba from the gram positive bacterium2 corynebacterium diphtheriae
47c2jadA_



not modelled 5.9 43
PDB header:electron transport
Chain: A: PDB Molecule:yellow fluorescent protein glutaredoxin fusion protein;
PDBTitle: yellow fluorescent protein - glutaredoxin fusion protein
48d1v58a1



not modelled 5.8 100
Fold:Thioredoxin fold
Superfamily:Thioredoxin-like
Family:DsbC/DsbG C-terminal domain-like
49c4tr1A_



not modelled 5.8 75
PDB header:oxidoreductase
Chain: A: PDB Molecule:glutaredoxin 3;
PDBTitle: crystal structure of gsh-bound cgrx2/c15s
50c3gn3B_



not modelled 5.7 50
PDB header:structural genomics, unknown function
Chain: B: PDB Molecule:putative protein-disulfide isomerase;
PDBTitle: crystal structure of a putative protein-disulfide isomerase from2 pseudomonas syringae to 2.5a resolution.
51c4qiwV_



not modelled 5.7 23
PDB header:transcription
Chain: V: PDB Molecule:dna-directed rna polymerase subunit n;
PDBTitle: crystal structure of euryarchaeal rna polymerase from thermococcus2 kodakarensis
52d1k18a_



not modelled 5.6 75
Fold:Zinc finger domain of DNA polymerase-alpha
Superfamily:Zinc finger domain of DNA polymerase-alpha
Family:Zinc finger domain of DNA polymerase-alpha
53c3qmxA_



not modelled 5.4 75
PDB header:electron transport
Chain: A: PDB Molecule:glutaredoxin a;
PDBTitle: x-ray crystal structure of synechocystis sp. pcc 6803 glutaredoxin a
54c3gmfA_



not modelled 5.4 60
PDB header:oxidoreductase
Chain: A: PDB Molecule:protein-disulfide isomerase;
PDBTitle: crystal structure of protein-disulfide isomerase from novosphingobium2 aromaticivorans
55d1rk4a2



not modelled 5.3 30
Fold:Thioredoxin fold
Superfamily:Thioredoxin-like
Family:Glutathione S-transferase (GST), N-terminal domain
56d1eeja1



not modelled 5.2 75
Fold:Thioredoxin fold
Superfamily:Thioredoxin-like
Family:DsbC/DsbG C-terminal domain-like
57d1eysh2



not modelled 5.0 24
Fold:Single transmembrane helix
Superfamily:Photosystem II reaction centre subunit H, transmembrane region
Family:Photosystem II reaction centre subunit H, transmembrane region

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Transmembrane helix prediction 

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