Phyre Home Retrieve Phyre Job Id
Emailmdejesus@rockefeller.edu
DescriptionRVBD2975c_(-)_3331368_3331622
DateThu Aug 8 16:20:13 BST 2019
Unique Job IDe544d69e02827186
SequenceVGTADRPLDA ... Download FASTA
Job Typenormal
Job Expiry

Summary 

Top model
Image coloured by rainbow N → C terminus
Model dimensions (Å):X:28.369 Y:44.339 Z:30.052
Model (left) based on template d3cr3a1
Top template information
Fold:DhaL-like
Superfamily:DhaL-like
Family:DhaL-like
Confidence and coverage
Confidence: 99.7% Coverage: 89%
75 residues ( 89% of your sequence) have been modelled with 99.7% confidence by the single highest scoring template.
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Sequence analysis 

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Secondary structure and disorder prediction [Show] 

Domain analysis [Show] 

Detailed template information [Hide] 

 

#
Template Alignment Coverage3D Model Confidence
% i.d. Template Information
1d3cr3a1



99.7 16
Fold:DhaL-like
Superfamily:DhaL-like
Family:DhaL-like
2c2btdA_



99.5 14
PDB header:transferase
Chain: A: PDB Molecule:pts-dependent dihydroxyacetone kinase;
PDBTitle: crystal structure of dhal from e. coli
3d1un8a1



99.5 18
Fold:DhaL-like
Superfamily:DhaL-like
Family:DhaL-like
4c1un9B_



98.9 17
PDB header:kinase
Chain: B: PDB Molecule:dihydroxyacetone kinase;
PDBTitle: crystal structure of the dihydroxyacetone kinase from c.2 freundii in complex with amp-pnp and mg2+
5c5m1hA_



42.6 35
PDB header:viral protein
Chain: A: PDB Molecule:gag protein;
PDBTitle: structure of a spumaretrovirus gag central domain reveals an ancient2 retroviral capsid
6c1t10A_



30.8 20
PDB header:isomerase
Chain: A: PDB Molecule:glucose-6-phosphate isomerase;
PDBTitle: phosphoglucose isomerase from leishmania mexicana in complex with2 substrate d-fructose-6-phosphate
7d1q50a_



27.0 20
Fold:SIS domain
Superfamily:SIS domain
Family:Phosphoglucose isomerase, PGI
8c5wcoC_



25.2 50
PDB header:viral protein
Chain: C: PDB Molecule:ns2;
PDBTitle: matrix protein (m1) of infectious salmon anaemia virus
9c3it4B_



20.9 19
PDB header:transferase
Chain: B: PDB Molecule:arginine biosynthesis bifunctional protein argj
PDBTitle: the crystal structure of ornithine acetyltransferase from2 mycobacterium tuberculosis (rv1653) at 1.7 a
10c2vzkD_



19.9 23
PDB header:transferase
Chain: D: PDB Molecule:glutamate n-acetyltransferase 2 beta chain;
PDBTitle: structure of the acyl-enzyme complex of an n-terminal nucleophile2 (ntn) hydrolase, oat2
11c1vraB_



18.2 35
PDB header:transferase
Chain: B: PDB Molecule:arginine biosynthesis bifunctional protein argj;
PDBTitle: crystal structure of arginine biosynthesis bifunctional protein argj2 (10175521) from bacillus halodurans at 2.00 a resolution
12c5ocdD_



17.8 7
PDB header:rna binding protein
Chain: D: PDB Molecule:cyclodipeptide synthase;
PDBTitle: structure of a cdps from fluoribacter dumoffii
13c3pr3B_



16.8 34
PDB header:isomerase
Chain: B: PDB Molecule:glucose-6-phosphate isomerase;
PDBTitle: crystal structure of plasmodium falciparum glucose-6-phosphate2 isomerase (pf14_0341) in complex with fructose-6-phosphate
14c6cfzJ_



16.2 22
PDB header:nuclear protein
Chain: J: PDB Molecule:spc34;
PDBTitle: structure of the dash/dam1 complex shows its role at the yeast2 kinetochore-microtubule interface
15d2r6gf1



15.4 5
Fold:MalF N-terminal region-like
Superfamily:MalF N-terminal region-like
Family:MalF N-terminal region-like
16c2wu8A_



15.3 28
PDB header:isomerase
Chain: A: PDB Molecule:glucose-6-phosphate isomerase;
PDBTitle: structural studies of phosphoglucose isomerase from2 mycobacterium tuberculosis h37rv
17c3ujhB_



15.1 27
PDB header:isomerase
Chain: B: PDB Molecule:glucose-6-phosphate isomerase;
PDBTitle: crystal structure of substrate-bound glucose-6-phosphate isomerase2 from toxoplasma gondii
18c2o2cB_



14.8 20
PDB header:isomerase
Chain: B: PDB Molecule:glucose-6-phosphate isomerase, glycosomal;
PDBTitle: crystal structure of phosphoglucose isomerase from t. brucei2 containing glucose-6-phosphate in the active site
19d1vz6a_



13.9 23
Fold:DmpA/ArgJ-like
Superfamily:DmpA/ArgJ-like
Family:ArgJ-like
20c4glkA_



13.8 63
PDB header:hydrolase
Chain: A: PDB Molecule:abiq;
PDBTitle: structure and activity of abiq, a lactococcal anti-phage2 endoribonuclease belonging to the type-iii toxin-antitoxin system
21c4qfhA_



not modelled 12.8 22
PDB header:isomerase
Chain: A: PDB Molecule:glucose-6-phosphate isomerase;
PDBTitle: structure of a glucose-6-phosphate isomerase from trypanosoma cruzi
22c4em6D_



not modelled 12.6 20
PDB header:isomerase
Chain: D: PDB Molecule:glucose-6-phosphate isomerase;
PDBTitle: the structure of glucose-6-phosphate isomerase (gpi) from brucella2 melitensis
23d1xcoa_



not modelled 11.9 21
Fold:Isocitrate/Isopropylmalate dehydrogenase-like
Superfamily:Isocitrate/Isopropylmalate dehydrogenase-like
Family:Phosphotransacetylase
24d2nsfa2



not modelled 11.8 27
Fold:SCP-like
Superfamily:SCP-like
Family:Micothiol-dependent maleylpyruvate isomerase C-terminal domain-like
25c4atoA_



not modelled 11.6 38
PDB header:toxin/antitoxin
Chain: A: PDB Molecule:toxn;
PDBTitle: new insights into the mechanism of bacterial type iii toxin-antitoxin2 systems: selective toxin inhibition by a non-coding rna pseudoknot
26c3hjbA_



not modelled 11.2 24
PDB header:isomerase
Chain: A: PDB Molecule:glucose-6-phosphate isomerase;
PDBTitle: 1.5 angstrom crystal structure of glucose-6-phosphate isomerase from2 vibrio cholerae.
27c5mlqA_



not modelled 11.2 11
PDB header:ligase
Chain: A: PDB Molecule:cdps;
PDBTitle: structure of cdps from nocardia brasiliensis
28c6cp8D_



not modelled 11.2 27
PDB header:toxin/antitoxin
Chain: D: PDB Molecule:cdii;
PDBTitle: contact-dependent growth inhibition toxin-immunity protein complex2 from from e. coli 3006
29c5uj6A_



not modelled 10.8 14
PDB header:hydrolase
Chain: A: PDB Molecule:glycosyl hydrolases family 2, sugar binding domain protein;
PDBTitle: crystal structure of bacteroides uniformis beta-glucuronidase
30d1zkea1



not modelled 10.8 20
Fold:ROP-like
Superfamily:HP1531-like
Family:HP1531-like
31c4mqdB_



not modelled 10.1 29
PDB header:hydrolase inhibitor
Chain: B: PDB Molecule:dna-entry nuclease inhibitor;
PDBTitle: crystal structure of comj, inhibitor of the dna degrading activity of2 nuca, from bacillus subtilis
32d1f61a_



not modelled 10.0 32
Fold:TIM beta/alpha-barrel
Superfamily:Phosphoenolpyruvate/pyruvate domain
Family:Phosphoenolpyruvate mutase/Isocitrate lyase-like
33d1hm5a_



not modelled 9.7 24
Fold:SIS domain
Superfamily:SIS domain
Family:Phosphoglucose isomerase, PGI
34c2xd0B_



not modelled 9.5 13
PDB header:toxin/rna
Chain: B: PDB Molecule:toxn;
PDBTitle: a processed non-coding rna regulates a bacterial antiviral system
35c4pkfC_



not modelled 9.1 67
PDB header:lyase
Chain: C: PDB Molecule:tutf;
PDBTitle: benzylsuccinate synthase alpha-beta-gamma complex
36c5f9pA_



not modelled 9.0 44
PDB header:oxidoreductase
Chain: A: PDB Molecule:anthrone oxidase-like protein;
PDBTitle: crystal structure study of anthrone oxidase-like protein
37c3fdqB_



not modelled 9.0 50
PDB header:dna binding protein/dna
Chain: B: PDB Molecule:motility gene repressor mogr;
PDBTitle: recognition of at-rich dna binding sites by the mogr2 repressor
38d1iata_



not modelled 8.8 22
Fold:SIS domain
Superfamily:SIS domain
Family:Phosphoglucose isomerase, PGI
39c2wzpQ_



not modelled 8.6 55
PDB header:viral protein
Chain: Q: PDB Molecule:lactococcal phage p2 orf15;
PDBTitle: structures of lactococcal phage p2 baseplate shed light on2 a novel mechanism of host attachment and activation in3 siphoviridae
40c2x5aT_



not modelled 8.5 55
PDB header:viral protein
Chain: T: PDB Molecule:orf15;
PDBTitle: structure of the phage p2 baseplate in its activated2 conformation with ca (part 2 of 2)
41c5l6mA_



not modelled 8.5 43
PDB header:hydrolase
Chain: A: PDB Molecule:vapb family protein;
PDBTitle: structure of caulobacter crescentus vapbc1 (vapb1deltac:vapc1 form)
42c4esjA_



not modelled 8.4 88
PDB header:hydrolase/dna
Chain: A: PDB Molecule:type-2 restriction enzyme dpni;
PDBTitle: restriction endonuclease dpni in complex with target dna
43c6j54d_



not modelled 8.1 75
PDB header:membrane protein
Chain: D: PDB Molecule:
PDBTitle: cryo-em structure of the mammalian e-state atp synthase fo section
44c6eewC_



not modelled 7.9 22
PDB header:lyase
Chain: C: PDB Molecule:aromatic-l-amino-acid decarboxylase;
PDBTitle: crystal structure of catharanthus roseus tryptophan decarboxylase in2 complex with l-tryptophan
45c3q9cF_



not modelled 7.8 6
PDB header:hydrolase
Chain: F: PDB Molecule:acetylpolyamine amidohydrolase;
PDBTitle: crystal structure of h159a apah complexed with n8-acetylspermidine
46c6gcjA_



not modelled 7.6 50
PDB header:structural protein
Chain: A: PDB Molecule:hydrophobin;
PDBTitle: solution structure of the roda hydrophobin from aspergillus fumigatus
47c5fcxB_



not modelled 7.5 4
PDB header:cartenoid binding protein
Chain: B: PDB Molecule:red carotenoid protein (rcp);
PDBTitle: structure of anabaena (nostoc) sp. pcc 7120 red carotenoid protein2 binding canthaxanthin
48c3nbuC_



not modelled 7.2 27
PDB header:isomerase
Chain: C: PDB Molecule:glucose-6-phosphate isomerase;
PDBTitle: crystal structure of pgi glucosephosphate isomerase
49c3g8rA_



not modelled 6.9 19
PDB header:biosynthetic protein
Chain: A: PDB Molecule:probable spore coat polysaccharide biosynthesis protein e;
PDBTitle: crystal structure of putative spore coat polysaccharide biosynthesis2 protein e from chromobacterium violaceum atcc 12472
50c6emoA_



not modelled 6.8 40
PDB header:transcription
Chain: A: PDB Molecule:pc4 and sfrs1-interacting protein,ledgf/p75 ibd-jpo2 m1;
PDBTitle: solution structure of the ledgf/p75 ibd - jpo2 (aa 1-32) complex
51c3ljkA_



not modelled 6.8 20
PDB header:isomerase
Chain: A: PDB Molecule:glucose-6-phosphate isomerase;
PDBTitle: glucose-6-phosphate isomerase from francisella tularensis.
52c6aozD_



not modelled 6.8 16
PDB header:gene regulation
Chain: D: PDB Molecule:casp8-associated protein 2;
PDBTitle: crystal structure of human flash n-terminal domain c54s/c83a (crystal2 form 1)
53c6fmbA_



not modelled 6.7 86
PDB header:rna binding protein
Chain: A: PDB Molecule:csep0064 putative effector protein;
PDBTitle: crystal structure of the bec1054 rnase-like effector from the fungal2 pathogen blumeria graminis
54c3kngA_



not modelled 6.7 10
PDB header:oxidoreductase
Chain: A: PDB Molecule:snoab;
PDBTitle: crystal structure of snoab, a cofactor-independent oxygenase2 from streptomyces nogalater, determined to 1.9 resolution
55c1ycoA_



not modelled 6.7 16
PDB header:transferase
Chain: A: PDB Molecule:branched-chain phosphotransacylase;
PDBTitle: crystal structure of a branched-chain phosphotransacylase from2 enterococcus faecalis v583
56d2pvaa_



not modelled 6.6 7
Fold:Ntn hydrolase-like
Superfamily:N-terminal nucleophile aminohydrolases (Ntn hydrolases)
Family:Penicillin V acylase
57c3i4eA_



not modelled 6.4 45
PDB header:lyase
Chain: A: PDB Molecule:isocitrate lyase;
PDBTitle: crystal structure of isocitrate lyase from burkholderia2 pseudomallei
58d1u0fa_



not modelled 6.4 17
Fold:SIS domain
Superfamily:SIS domain
Family:Phosphoglucose isomerase, PGI
59c3e5bB_



not modelled 6.2 27
PDB header:lyase
Chain: B: PDB Molecule:isocitrate lyase;
PDBTitle: 2.4 a crystal structure of isocitrate lyase from brucella melitensis
60c2rilA_



not modelled 6.1 30
PDB header:oxidoreductase
Chain: A: PDB Molecule:antibiotic biosynthesis monooxygenase;
PDBTitle: crystal structure of a putative monooxygenase (yp_001095275.1) from2 shewanella loihica pv-4 at 1.26 a resolution
61d1uufa1



not modelled 6.1 22
Fold:GroES-like
Superfamily:GroES-like
Family:Alcohol dehydrogenase-like, N-terminal domain
62d1h6za3



not modelled 6.1 33
Fold:ATP-grasp
Superfamily:Glutathione synthetase ATP-binding domain-like
Family:Pyruvate phosphate dikinase, N-terminal domain
63c3t0yB_



not modelled 6.0 44
PDB header:transcription regulator/protein binding
Chain: B: PDB Molecule:nepr;
PDBTitle: structure of the phyr anti-anti-sigma domain bound to the anti-sigma2 factor, nepr
64c3menC_



not modelled 5.9 16
PDB header:hydrolase
Chain: C: PDB Molecule:acetylpolyamine aminohydrolase;
PDBTitle: crystal structure of acetylpolyamine aminohydrolase from burkholderia2 pseudomallei, iodide soak
65c1wozA_



not modelled 5.9 10
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:177aa long conserved hypothetical protein (st1454);
PDBTitle: crystal structure of uncharacterized protein st1454 from sulfolobus2 tokodaii
66c5ji5A_



not modelled 5.8 22
PDB header:hydrolase
Chain: A: PDB Molecule:bupha.10154.a.b1;
PDBTitle: crystal structure of a histone deacetylase superfamily protein from2 burkholderia phymatumphymatum
67c6ioxB_



not modelled 5.7 16
PDB header:transferase
Chain: B: PDB Molecule:phosphotransacetylase;
PDBTitle: crystal structure of porphyromonas gingivalis phosphotransacetylase in2 complex with acetyl-coa
68c3tj6B_



not modelled 5.7 21
PDB header:protein binding/toxin
Chain: B: PDB Molecule:antigenic heat-stable 120 kda protein;
PDBTitle: human vinculin head domain (vh1, residues 1-258) in complex with the2 vinculin binding site of the surface cell antigen 4 (sca4-vbs-c;3 residues 812-835) from rickettsia rickettsii
69d1gzda_



not modelled 5.6 22
Fold:SIS domain
Superfamily:SIS domain
Family:Phosphoglucose isomerase, PGI
70c4q86B_



not modelled 5.6 14
PDB header:protein binding
Chain: B: PDB Molecule:ribosomal protein s12 methylthiotransferase accessory
PDBTitle: ycao with amp bound
71d1dfma_



not modelled 5.5 38
Fold:Restriction endonuclease-like
Superfamily:Restriction endonuclease-like
Family:Restriction endonuclease BglII
72c2qffA_



not modelled 5.4 23
PDB header:hydrolase inhibitor
Chain: A: PDB Molecule:hypothetical protein;
PDBTitle: crystal structure of staphylococcal complement inhibitor
73c4e1oC_



not modelled 5.4 11
PDB header:lyase
Chain: C: PDB Molecule:histidine decarboxylase;
PDBTitle: human histidine decarboxylase complex with histidine methyl ester2 (hme)
74d2af4c1



not modelled 5.4 26
Fold:Isocitrate/Isopropylmalate dehydrogenase-like
Superfamily:Isocitrate/Isopropylmalate dehydrogenase-like
Family:Phosphotransacetylase
75c5lnkZ_



not modelled 5.4 29
PDB header:oxidoreductase
Chain: Z: PDB Molecule:mitochondrial complex i, pdsw subunit;
PDBTitle: entire ovine respiratory complex i
76d1s5qb_



not modelled 5.3 14
Fold:PAH2 domain
Superfamily:PAH2 domain
Family:PAH2 domain
77d3bgea1



not modelled 5.3 17
Fold:post-AAA+ oligomerization domain-like
Superfamily:post-AAA+ oligomerization domain-like
Family:MgsA/YrvN C-terminal domain-like
78c5o5jO_



not modelled 5.3 21
PDB header:ribosome
Chain: O: PDB Molecule:30s ribosomal protein s15;
PDBTitle: structure of the 30s small ribosomal subunit from mycobacterium2 smegmatis
79c5aozA_



not modelled 5.2 67
PDB header:sugar binding protein
Chain: A: PDB Molecule:putative cellulosomal scaffoldin protein;
PDBTitle: high resolution semet structure of the third cohesin from2 ruminococcus flavefaciens scaffoldin protein, scab
80c5uukB_



not modelled 5.2 21
PDB header:apoptosis
Chain: B: PDB Molecule:bfl-1-specific selected peptide;
PDBTitle: human bfl-1 in complex with a bfl-1-specific selected peptide
81c1byvA_



not modelled 5.1 26
PDB header:hormone/growth factor
Chain: A: PDB Molecule:protein (calcitonin);
PDBTitle: glycosylated eel calcitonin

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