Phyre Home Retrieve Phyre Job Id
Emailmdejesus@rockefeller.edu
DescriptionRVBD2976c_(ung)_3332081_3332764
DateThu Aug 8 16:20:14 BST 2019
Unique Job ID3f85fc2883ab64a0
SequenceVTARPLSELV ... Download FASTA
Job Typenormal
Job Expiry

Summary 

Top model
Image coloured by rainbow N → C terminus
Model dimensions (Å):X:43.973 Y:45.563 Z:46.850
Model (left) based on template c2zhxG_
Top template information
PDB header:hydrolase/hydrolase inhibitor
Chain: G: PDB Molecule:uracil-dna glycosylase;
PDBTitle: crystal structure of uracil-dna glycosylase from mycobacterium2 tuberculosis in complex with a proteinaceous inhibitor
Confidence and coverage
Confidence:100.0% Coverage: 99%
225 residues ( 99% of your sequence) have been modelled with 100.0% confidence by the single highest scoring template.
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Sequence analysis 

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Domain analysis [Show] 

Detailed template information [Hide] 

 

#
Template Alignment Coverage3D Model Confidence
% i.d. Template Information
1c2zhxG_
100.0 100
PDB header:hydrolase/hydrolase inhibitor
Chain: G: PDB Molecule:uracil-dna glycosylase;
PDBTitle: crystal structure of uracil-dna glycosylase from mycobacterium2 tuberculosis in complex with a proteinaceous inhibitor
2c3zoqA_
100.0 46
PDB header:hydrolase/viral protein
Chain: A: PDB Molecule:uracil-dna glycosylase;
PDBTitle: structure of bsudg-p56 complex
3c3tr7A_
100.0 41
PDB header:hydrolase
Chain: A: PDB Molecule:uracil-dna glycosylase;
PDBTitle: structure of a uracil-dna glycosylase (ung) from coxiella burnetii
4d1okba_
100.0 39
Fold:Uracil-DNA glycosylase-like
Superfamily:Uracil-DNA glycosylase-like
Family:Uracil-DNA glycosylase
5c3cxmA_
100.0 40
PDB header:hydrolase
Chain: A: PDB Molecule:uracil-dna glycosylase;
PDBTitle: leishmania naiffi uracil-dna glycosylase in complex with 5-bromouracil
6c2booA_
100.0 46
PDB header:hydrolase
Chain: A: PDB Molecule:uracil-dna glycosylase;
PDBTitle: the crystal structure of uracil-dna n-glycosylase (ung) from2 deinococcus radiodurans.
7d3euga_
100.0 38
Fold:Uracil-DNA glycosylase-like
Superfamily:Uracil-DNA glycosylase-like
Family:Uracil-DNA glycosylase
8d2hxma1
100.0 39
Fold:Uracil-DNA glycosylase-like
Superfamily:Uracil-DNA glycosylase-like
Family:Uracil-DNA glycosylase
9c5x55A_
100.0 29
PDB header:hydrolase
Chain: A: PDB Molecule:probable uracil-dna glycosylase;
PDBTitle: crystal structure of mimivirus uracil-dna glycosylase
10d1laue_
100.0 36
Fold:Uracil-DNA glycosylase-like
Superfamily:Uracil-DNA glycosylase-like
Family:Uracil-DNA glycosylase
11c5nn7A_
100.0 33
PDB header:hydrolase
Chain: A: PDB Molecule:uracil-dna glycosylase;
PDBTitle: kshv uracil-dna glycosylase, apo form
12d2j8xa1
100.0 36
Fold:Uracil-DNA glycosylase-like
Superfamily:Uracil-DNA glycosylase-like
Family:Uracil-DNA glycosylase
13c2owrD_
100.0 21
PDB header:hydrolase
Chain: D: PDB Molecule:uracil-dna glycosylase;
PDBTitle: crystal structure of vaccinia virus uracil-dna glycosylase
14c5x3hA_
100.0 25
PDB header:dna binding protein
Chain: A: PDB Molecule:uracil-dna glycosylase;
PDBTitle: the y81g mutant of the ung crystal structure from nitratifractor2 salsuginis
15c2rbaB_
96.9 11
PDB header:hydrolase/dna
Chain: B: PDB Molecule:g/t mismatch-specific thymine dna glycosylase;
PDBTitle: structure of human thymine dna glycosylase bound to abasic and2 undamaged dna
16d1muga_
94.6 17
Fold:Uracil-DNA glycosylase-like
Superfamily:Uracil-DNA glycosylase-like
Family:Mug-like
17d1ui0a_
94.4 19
Fold:Uracil-DNA glycosylase-like
Superfamily:Uracil-DNA glycosylase-like
Family:Mug-like
18c2d3yA_
94.4 21
PDB header:hydrolase
Chain: A: PDB Molecule:uracil-dna glycosylase;
PDBTitle: crystal structure of uracil-dna glycosylase from thermus thermophilus2 hb8
19c2c2pA_
94.1 14
PDB header:hydrolase
Chain: A: PDB Molecule:g/u mismatch-specific dna glycosylase;
PDBTitle: the crystal structure of mismatch specific uracil-dna2 glycosylase (mug) from deinococcus radiodurans
20d1oe4a_
93.4 21
Fold:Uracil-DNA glycosylase-like
Superfamily:Uracil-DNA glycosylase-like
Family:Single-strand selective monofunctional uracil-DNA glycosylase SMUG1
21c3ikbB_
not modelled 93.4 18
PDB header:structural genomics, unknown function
Chain: B: PDB Molecule:uncharacterized conserved protein;
PDBTitle: the structure of a conserved protein from streptococcus2 mutans ua159.
22c5h93C_
not modelled 92.9 20
PDB header:hydrolase
Chain: C: PDB Molecule:geobacter metallireducens smug1;
PDBTitle: crystal structure of geobacter metallireducens smug1
23c4zbzA_
not modelled 90.0 19
PDB header:hydrolase
Chain: A: PDB Molecule:uracil-dna glycosylase;
PDBTitle: family 4 uracil-dna glycosylase from sulfolobus tokodaii (free form,2 x-ray wavelength=1.5418)
24d1vk2a_
not modelled 88.8 20
Fold:Uracil-DNA glycosylase-like
Superfamily:Uracil-DNA glycosylase-like
Family:Mug-like
25c6ajrA_
not modelled 88.8 17
PDB header:dna binding protein
Chain: A: PDB Molecule:uracil dna glycosylase superfamily protein;
PDBTitle: complex form of uracil dna glycosylase x and uracil
26c2h2wA_
not modelled 55.6 18
PDB header:transferase
Chain: A: PDB Molecule:homoserine o-succinyltransferase;
PDBTitle: crystal structure of homoserine o-succinyltransferase (ec 2.3.1.46)2 (homoserine o-transsuccinylase) (hts) (tm0881) from thermotoga3 maritima at 2.52 a resolution
27c5grkA_
not modelled 48.8 100
PDB header:hydrolase
Chain: A: PDB Molecule:blr0248 protein;
PDBTitle: crystal structure of uracil dna glycosylase -xanthine complex from2 bradyrhizobium diazoefficiens
28c2l3fA_
not modelled 45.8 14
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:uncharacterized protein;
PDBTitle: solution nmr structure of a putative uracil dna glycosylase from2 methanosarcina acetivorans, northeast structural genomics consortium3 target mvr76
29d2ghra1
not modelled 44.3 21
Fold:Flavodoxin-like
Superfamily:Class I glutamine amidotransferase-like
Family:HTS-like
30c5tbfB_
not modelled 38.3 29
PDB header:translation
Chain: B: PDB Molecule:translation elongation factor;
PDBTitle: crystal structure of semet derivatives of domain2 and domain 3 of rctb
31c5cjjA_
not modelled 36.3 20
PDB header:transferase
Chain: A: PDB Molecule:phosphoribosylglycinamide formyltransferase;
PDBTitle: the crystal structure of phosphoribosylglycinamide formyltransferase2 from campylobacter jejuni subsp. jejuni nctc 11168
32c3av3A_
not modelled 31.5 26
PDB header:transferase
Chain: A: PDB Molecule:phosphoribosylglycinamide formyltransferase;
PDBTitle: crystal structure of glycinamide ribonucleotide transformylase 1 from2 geobacillus kaustophilus
33d1meoa_
not modelled 30.8 20
Fold:Formyltransferase
Superfamily:Formyltransferase
Family:Formyltransferase
34c3p9xB_
not modelled 29.4 24
PDB header:transferase
Chain: B: PDB Molecule:phosphoribosylglycinamide formyltransferase;
PDBTitle: crystal structure of phosphoribosylglycinamide formyltransferase from2 bacillus halodurans
35c2i5kB_
not modelled 29.1 15
PDB header:transferase
Chain: B: PDB Molecule:utp--glucose-1-phosphate uridylyltransferase;
PDBTitle: crystal structure of ugp1p
36c2ywrA_
not modelled 28.3 24
PDB header:transferase
Chain: A: PDB Molecule:phosphoribosylglycinamide formyltransferase;
PDBTitle: crystal structure of gar transformylase from aquifex aeolicus
37c2q4jB_
not modelled 27.7 16
PDB header:transferase
Chain: B: PDB Molecule:probable utp-glucose-1-phosphate uridylyltransferase 2;
PDBTitle: ensemble refinement of the protein crystal structure of gene product2 from arabidopsis thaliana at3g03250, a putative udp-glucose3 pyrophosphorylase
38c3aufA_
not modelled 27.2 31
PDB header:transferase
Chain: A: PDB Molecule:glycinamide ribonucleotide transformylase 1;
PDBTitle: crystal structure of glycinamide ribonucleotide transformylase 1 from2 symbiobacterium toebii
39c5d88A_
not modelled 26.7 18
PDB header:hydrolase
Chain: A: PDB Molecule:predicted protease of the collagenase family;
PDBTitle: the structure of the u32 peptidase mk0906
40c3tqrA_
not modelled 25.3 17
PDB header:transferase
Chain: A: PDB Molecule:phosphoribosylglycinamide formyltransferase;
PDBTitle: structure of the phosphoribosylglycinamide formyltransferase (purn) in2 complex with ches from coxiella burnetii
41c4bmaB_
not modelled 25.3 15
PDB header:transferase
Chain: B: PDB Molecule:udp-n-acetylglucosamine pyrophosphorylase;
PDBTitle: structural of aspergillus fumigatus udp-n-acetylglucosamine2 pyrophosphorylase
42d2icya2
not modelled 24.0 14
Fold:Nucleotide-diphospho-sugar transferases
Superfamily:Nucleotide-diphospho-sugar transferases
Family:UDP-glucose pyrophosphorylase
43c4s1nA_
not modelled 23.7 17
PDB header:transferase
Chain: A: PDB Molecule:phosphoribosylglycinamide formyltransferase;
PDBTitle: the crystal structure of phosphoribosylglycinamide formyltransferase2 from streptococcus pneumoniae tigr4
44c3oc9A_
not modelled 23.5 10
PDB header:transferase
Chain: A: PDB Molecule:udp-n-acetylglucosamine pyrophosphorylase;
PDBTitle: crystal structure of putative udp-n-acetylglucosamine2 pyrophosphorylase from entamoeba histolytica
45c4zyaA_
not modelled 22.6 23
PDB header:ligase
Chain: A: PDB Molecule:asparagine--trna ligase, cytoplasmic;
PDBTitle: the n-terminal extension domain of human asparaginyl-trna synthetase
46d1r2aa_
not modelled 22.0 28
Fold:Dimerization-anchoring domain of cAMP-dependent PK regulatory subunit
Superfamily:Dimerization-anchoring domain of cAMP-dependent PK regulatory subunit
Family:Dimerization-anchoring domain of cAMP-dependent PK regulatory subunit
47d1jkxa_
not modelled 21.3 23
Fold:Formyltransferase
Superfamily:Formyltransferase
Family:Formyltransferase
48c2yqsA_
not modelled 21.2 12
PDB header:transferase
Chain: A: PDB Molecule:udp-n-acetylglucosamine pyrophosphorylase;
PDBTitle: crystal structure of uridine-diphospho-n-acetylglucosamine2 pyrophosphorylase from candida albicans, in the product-binding form
49c4ds3A_
not modelled 20.1 23
PDB header:transferase
Chain: A: PDB Molecule:phosphoribosylglycinamide formyltransferase;
PDBTitle: crystal structure of phosphoribosylglycinamide formyltransferase from2 brucella melitensis
50c4d6uI_
not modelled 19.5 47
PDB header:oxidoreductase
Chain: I: PDB Molecule:cytochrome b-c1 complex subunit rieske, mitochondrial;
PDBTitle: cytochrome bc1 bound to the 4(1h)-pyridone gsk932121
51c5zyoD_
not modelled 19.0 30
PDB header:transferase
Chain: D: PDB Molecule:ribosomal rna large subunit methyltransferase h;
PDBTitle: crystal structure of domain-swapped circular-permuted ybea (cp74) from2 escherichia coli
52d2hwna1
not modelled 18.7 27
Fold:Dimerization-anchoring domain of cAMP-dependent PK regulatory subunit
Superfamily:Dimerization-anchoring domain of cAMP-dependent PK regulatory subunit
Family:Dimerization-anchoring domain of cAMP-dependent PK regulatory subunit
53c3dcjA_
not modelled 17.5 25
PDB header:transferase
Chain: A: PDB Molecule:probable 5'-phosphoribosylglycinamide formyltransferase
PDBTitle: crystal structure of glycinamide formyltransferase (purn) from2 mycobacterium tuberculosis in complex with 5-methyl-5,6,7,8-3 tetrahydrofolic acid derivative
54c4xzcB_
not modelled 17.4 21
PDB header:rna binding protein
Chain: B: PDB Molecule:nucleoprotein;
PDBTitle: the crystal structure of kupe virus nucleoprotein
55c5ubfB_
not modelled 17.2 29
PDB header:dna binding protein
Chain: B: PDB Molecule:rctb replication initiator protein;
PDBTitle: crystal structure of the rctb domains 2-3, rctb-155-483
56c4f4mA_
not modelled 17.0 45
PDB header:hydrolase regulator
Chain: A: PDB Molecule:papain peptidoglycan amidase effector tse1;
PDBTitle: structure of the type vi peptidoglycan amidase effector tse1 (c30a)2 from pseudomonas aeruginosa
57d1maba2
not modelled 16.7 29
Fold:Domain of alpha and beta subunits of F1 ATP synthase-like
Superfamily:N-terminal domain of alpha and beta subunits of F1 ATP synthase
Family:N-terminal domain of alpha and beta subunits of F1 ATP synthase
58c5jp6A_
not modelled 16.6 30
PDB header:hydrolase
Chain: A: PDB Molecule:putative polysaccharide deacetylase;
PDBTitle: bdellovibrio bacteriovorus peptidoglycan deacetylase bd3279
59d1vm8a_
not modelled 16.4 12
Fold:Nucleotide-diphospho-sugar transferases
Superfamily:Nucleotide-diphospho-sugar transferases
Family:UDP-glucose pyrophosphorylase
60c4f0wA_
not modelled 16.2 45
PDB header:hydrolase
Chain: A: PDB Molecule:putative uncharacterized protein;
PDBTitle: crystal structure of type effector tse1 c30a mutant from pseudomonas2 aeruginousa
61d1jv1a_
not modelled 15.6 12
Fold:Nucleotide-diphospho-sugar transferases
Superfamily:Nucleotide-diphospho-sugar transferases
Family:UDP-glucose pyrophosphorylase
62c1fmtA_
not modelled 15.2 23
PDB header:formyltransferase
Chain: A: PDB Molecule:methionyl-trna fmet formyltransferase;
PDBTitle: methionyl-trnafmet formyltransferase from escherichia coli
63c4bwsE_
not modelled 15.1 55
PDB header:transcription
Chain: E: PDB Molecule:polyglutamine-binding protein 1;
PDBTitle: crystal structure of the heterotrimer of pqbp1, u5-15kd and2 u5-52kd.
64c4bwqD_
not modelled 14.3 75
PDB header:transcription
Chain: D: PDB Molecule:polyglutamine-binding protein 1;
PDBTitle: crystal structure of u5-15kd in a complex with pqbp1
65c4bwqH_
not modelled 14.3 75
PDB header:transcription
Chain: H: PDB Molecule:polyglutamine-binding protein 1;
PDBTitle: crystal structure of u5-15kd in a complex with pqbp1
66c2y8uA_
not modelled 14.1 19
PDB header:hydrolase
Chain: A: PDB Molecule:chitin deacetylase;
PDBTitle: a. nidulans chitin deacetylase
67c4bwqB_
not modelled 13.9 75
PDB header:transcription
Chain: B: PDB Molecule:polyglutamine-binding protein 1;
PDBTitle: crystal structure of u5-15kd in a complex with pqbp1
68c4bwqF_
not modelled 13.5 75
PDB header:transcription
Chain: F: PDB Molecule:polyglutamine-binding protein 1;
PDBTitle: crystal structure of u5-15kd in a complex with pqbp1
69d1fmta2
not modelled 13.0 22
Fold:Formyltransferase
Superfamily:Formyltransferase
Family:Formyltransferase
70d1skyb2
not modelled 12.9 25
Fold:Domain of alpha and beta subunits of F1 ATP synthase-like
Superfamily:N-terminal domain of alpha and beta subunits of F1 ATP synthase
Family:N-terminal domain of alpha and beta subunits of F1 ATP synthase
71c3r0qA_
not modelled 12.9 23
PDB header:transferase
Chain: A: PDB Molecule:probable protein arginine n-methyltransferase 4.2;
PDBTitle: a uniquely open conformation revealed in the crystal structure of2 arabidopsis thaliana protein arginine methyltransferase 10
72d1fx0a2
not modelled 12.6 25
Fold:Domain of alpha and beta subunits of F1 ATP synthase-like
Superfamily:N-terminal domain of alpha and beta subunits of F1 ATP synthase
Family:N-terminal domain of alpha and beta subunits of F1 ATP synthase
73c4zhjA_
not modelled 12.6 15
PDB header:metal binding protein
Chain: A: PDB Molecule:mg-chelatase subunit chlh;
PDBTitle: crystal structure of the catalytic subunit of magnesium chelatase
74d2blna2
not modelled 12.3 17
Fold:Formyltransferase
Superfamily:Formyltransferase
Family:Formyltransferase
75c4bwsB_
not modelled 12.2 75
PDB header:transcription
Chain: B: PDB Molecule:polyglutamine-binding protein 1;
PDBTitle: crystal structure of the heterotrimer of pqbp1, u5-15kd and2 u5-52kd.
76c1yrwA_
not modelled 12.2 17
PDB header:transferase
Chain: A: PDB Molecule:protein arna;
PDBTitle: crystal structure of e.coli arna transformylase domain
77c2p2gD_
not modelled 12.1 16
PDB header:transferase
Chain: D: PDB Molecule:ornithine carbamoyltransferase;
PDBTitle: crystal structure of ornithine carbamoyltransferase from mycobacterium2 tuberculosis (rv1656): orthorhombic form
78c5vytD_
not modelled 11.9 22
PDB header:transferase
Chain: D: PDB Molecule:gdp-mannose 4,6-dehydratase / gdp-4-amino-4,6-dideoxy-d-
PDBTitle: crystal structure of the wbkc n-formyltransferase (f142a variant) from2 brucella melitensis
79c2q62A_
not modelled 11.7 4
PDB header:flavoprotein
Chain: A: PDB Molecule:arsh;
PDBTitle: crystal structure of arsh from sinorhizobium meliloti
80c3h0dB_
not modelled 11.6 13
PDB header:transcription/dna
Chain: B: PDB Molecule:ctsr;
PDBTitle: crystal structure of ctsr in complex with a 26bp dna duplex
81c5h77B_
not modelled 11.5 29
PDB header:signaling protein, immune system
Chain: B: PDB Molecule:camp-dependent protein kinase type ii-alpha regulatory
PDBTitle: crystal structure of the pka-protein a fusion protein
82d2jdia2
not modelled 11.2 29
Fold:Domain of alpha and beta subunits of F1 ATP synthase-like
Superfamily:N-terminal domain of alpha and beta subunits of F1 ATP synthase
Family:N-terminal domain of alpha and beta subunits of F1 ATP synthase
83c3nrbD_
not modelled 11.1 17
PDB header:hydrolase
Chain: D: PDB Molecule:formyltetrahydrofolate deformylase;
PDBTitle: crystal structure of a formyltetrahydrofolate deformylase (puru,2 pp_1943) from pseudomonas putida kt2440 at 2.05 a resolution
84c3u3iA_
not modelled 11.0 22
PDB header:rna binding protein
Chain: A: PDB Molecule:nucleocapsid protein;
PDBTitle: a rna binding protein from crimean-congo hemorrhagic fever virus
85c3o1lB_
not modelled 11.0 17
PDB header:hydrolase
Chain: B: PDB Molecule:formyltetrahydrofolate deformylase;
PDBTitle: crystal structure of a formyltetrahydrofolate deformylase (pspto_4314)2 from pseudomonas syringae pv. tomato str. dc3000 at 2.20 a resolution
86c4rr2D_
not modelled 10.4 35
PDB header:transferase
Chain: D: PDB Molecule:dna primase large subunit;
PDBTitle: crystal structure of human primase
87c4zdtB_
not modelled 10.1 36
PDB header:hydrolase
Chain: B: PDB Molecule:structure-specific endonuclease subunit slx4;
PDBTitle: crystal structure of the ring finger domain of slx1 in complex with2 the c-terminal domain of slx4
88d2bw0a2
not modelled 9.9 22
Fold:Formyltransferase
Superfamily:Formyltransferase
Family:Formyltransferase
89d1q3qa2
not modelled 9.6 19
Fold:The "swivelling" beta/beta/alpha domain
Superfamily:GroEL apical domain-like
Family:Group II chaperonin (CCT, TRIC), apical domain
90c3k1yE_
not modelled 9.5 13
PDB header:oxidoreductase
Chain: E: PDB Molecule:oxidoreductase;
PDBTitle: x-ray structure of oxidoreductase from corynebacterium diphtheriae.2 orthorombic crystal form, northeast structural genomics consortium3 target cdr100d
91c3n0vD_
not modelled 9.5 17
PDB header:hydrolase
Chain: D: PDB Molecule:formyltetrahydrofolate deformylase;
PDBTitle: crystal structure of a formyltetrahydrofolate deformylase (pp_0327)2 from pseudomonas putida kt2440 at 2.25 a resolution
92c5oeoC_
not modelled 9.5 30
PDB header:membrane protein
Chain: C: PDB Molecule:transient receptor potential cation channel subfamily v
PDBTitle: solution structure of the complex of trpv5(655-725) with a calmodulin2 e32q/e68q double mutant
93c4c9vA_
not modelled 9.5 26
PDB header:signaling protein
Chain: A: PDB Molecule:rnf43;
PDBTitle: xenopus rnf43 ectodomain in complex with xenopus rspo2 fu1-fu2
94c5zwlG_
not modelled 9.2 17
PDB header:hydrolase
Chain: G: PDB Molecule:atp synthase gamma chain;
PDBTitle: crystal structure of the gamma - epsilon complex of photosynthetic2 cyanobacterial f1-atpase
95d1tska_
not modelled 9.1 39
Fold:Knottins (small inhibitors, toxins, lectins)
Superfamily:Scorpion toxin-like
Family:Short-chain scorpion toxins
96c3rfoA_
not modelled 8.9 23
PDB header:transferase
Chain: A: PDB Molecule:methionyl-trna formyltransferase;
PDBTitle: crystal structure of methyionyl-trna formyltransferase from bacillus2 anthracis
97c5uaiA_
not modelled 8.9 31
PDB header:transferase
Chain: A: PDB Molecule:methionyl-trna formyltransferase;
PDBTitle: crystal structure of methionyl-trna formyltransferase from pseudomonas2 aeruginosa
98c4c84B_
not modelled 8.6 25
PDB header:ligase
Chain: B: PDB Molecule:e3 ubiquitin-protein ligase znrf3;
PDBTitle: zebrafish znrf3 ectodomain crystal form i
99c3q0iA_
not modelled 8.6 29
PDB header:transferase
Chain: A: PDB Molecule:methionyl-trna formyltransferase;
PDBTitle: methionyl-trna formyltransferase from vibrio cholerae

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