Phyre Home Retrieve Phyre Job Id
Emailmdejesus@rockefeller.edu
DescriptionRVBD2977c_(thiL)_3332797_3333798
DateThu Aug 8 16:20:14 BST 2019
Unique Job ID2d4e93a8917bba4d
SequenceVTTKDHSLAT ... Download FASTA
Job Typenormal
Job Expiry

Summary 

Top model
Image coloured by rainbow N → C terminus
Model dimensions (Å):X:53.738 Y:61.255 Z:56.196
Model (left) based on template c3c9uB_
Top template information
PDB header:transferase
Chain: B: PDB Molecule:thiamine monophosphate kinase;
PDBTitle: aathil complexed with adp and tpp
Confidence and coverage
Confidence:100.0% Coverage: 91%
304 residues ( 91% of your sequence) have been modelled with 100.0% confidence by the single highest scoring template.
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Sequence analysis 

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Secondary structure and disorder prediction [Show] 

Domain analysis [Show] 

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#
Template Alignment Coverage3D Model Confidence
% i.d. Template Information
1c3c9uB_



100.0 30
PDB header:transferase
Chain: B: PDB Molecule:thiamine monophosphate kinase;
PDBTitle: aathil complexed with adp and tpp
2c1vqvB_



100.0 30
PDB header:transferase
Chain: B: PDB Molecule:thiamine monophosphate kinase;
PDBTitle: crystal structure of thiamine monophosphate kinase (thil)2 from aquifex aeolicus
3c5cm7A_



100.0 31
PDB header:transferase
Chain: A: PDB Molecule:thiamine-monophosphate kinase;
PDBTitle: structure of thiamine-monophosphate kinase from acinetobacter2 baumannii in complex with adenosine diphosphate (adp) and thiamine3 diphosphate (tpp)
4c2yxzA_



100.0 27
PDB header:transferase
Chain: A: PDB Molecule:thiamin-monophosphate kinase;
PDBTitle: crystal structure of tt0281 from thermus thermophilus hb8
5c5vk4B_



100.0 16
PDB header:ligase
Chain: B: PDB Molecule:phosphoribosylformylglycinamidine cyclo-ligase;
PDBTitle: crystal structure of a phosphoribosylformylglycinamidine cyclo-ligase2 from neisseria gonorrhoeae bound to amppnp and magnesium
6c3mcqA_



100.0 30
PDB header:transferase
Chain: A: PDB Molecule:thiamine-monophosphate kinase;
PDBTitle: crystal structure of thiamine-monophosphate kinase (mfla_0573) from2 methylobacillus flagellatus kt at 1.91 a resolution
7c2btuB_



100.0 16
PDB header:synthase
Chain: B: PDB Molecule:phosphoribosyl-aminoimidazole synthetase;
PDBTitle: crystal structure of phosphoribosylformylglycinamidine cyclo-ligase2 from bacillus anthracis at 2.3a resolution.
8c1cliD_



100.0 18
PDB header:ligase
Chain: D: PDB Molecule:protein (phosphoribosyl-aminoimidazole synthetase);
PDBTitle: x-ray crystal structure of aminoimidazole ribonucleotide synthetase2 (purm), from the e. coli purine biosynthetic pathway, at 2.5 a3 resolution
9c3vtiD_



100.0 20
PDB header:transferase
Chain: D: PDB Molecule:hydrogenase maturation factor;
PDBTitle: crystal structure of hype-hypf complex
10c2rb9D_



100.0 25
PDB header:structural genomics, unknown function
Chain: D: PDB Molecule:hype protein;
PDBTitle: crystal structure of e.coli hype
11c2z1tA_



100.0 21
PDB header:lyase
Chain: A: PDB Molecule:hydrogenase expression/formation protein hype;
PDBTitle: crystal structure of hydrogenase maturation protein hype
12c3fd5B_



100.0 21
PDB header:transferase
Chain: B: PDB Molecule:selenide, water dikinase 1;
PDBTitle: crystal structure of human selenophosphate synthetase 12 complex with ampcp
13c3vysC_



100.0 23
PDB header:metal binding protein/transferase
Chain: C: PDB Molecule:hydrogenase expression/formation protein hype;
PDBTitle: crystal structure of the hypc-hypd-hype complex (form i)
14c3u0oA_



100.0 21
PDB header:transferase
Chain: A: PDB Molecule:selenide, water dikinase;
PDBTitle: the crystal structure of selenophosphate synthetase from e. coli
15c2zodB_



100.0 15
PDB header:transferase
Chain: B: PDB Molecule:selenide, water dikinase;
PDBTitle: crystal structure of selenophosphate synthetase from aquifex aeolicus
16c2zauB_



100.0 14
PDB header:transferase
Chain: B: PDB Molecule:selenide, water dikinase;
PDBTitle: crystal structure of an n-terminally truncated2 selenophosphate synthetase from aquifex aeolicus
17c2z01A_



100.0 17
PDB header:ligase
Chain: A: PDB Molecule:phosphoribosylformylglycinamidine cyclo-ligase;
PDBTitle: crystal structure of phosphoribosylaminoimidazole synthetase from2 geobacillus kaustophilus
18c3m84A_



100.0 15
PDB header:ligase
Chain: A: PDB Molecule:phosphoribosylformylglycinamidine cyclo-ligase;
PDBTitle: crystal structure of phosphoribosylaminoimidazole synthetase from2 francisella tularensis
19c2z1eA_



100.0 25
PDB header:transferase
Chain: A: PDB Molecule:hydrogenase expression/formation protein hype;
PDBTitle: crystal structure of hype from thermococcus kodakaraensis (outward2 form)
20c2v9yA_



100.0 17
PDB header:ligase
Chain: A: PDB Molecule:phosphoribosylformylglycinamidine cyclo-ligase;
PDBTitle: human aminoimidazole ribonucleotide synthetase
21c5avmE_



not modelled 100.0 17
PDB header:ligase
Chain: E: PDB Molecule:phosphoribosylformylglycinamidine cyclo-ligase;
PDBTitle: crystal structures of 5-aminoimidazole ribonucleotide (air)2 synthetase, purm, from thermus thermophilus
22c3ac6A_



not modelled 100.0 24
PDB header:ligase
Chain: A: PDB Molecule:phosphoribosylformylglycinamidine synthase 2;
PDBTitle: crystal structure of purl from thermus thermophilus
23c5l16A_



not modelled 100.0 22
PDB header:transferase
Chain: A: PDB Molecule:putative selenophosphate synthetase;
PDBTitle: crystal structure of n-terminus truncated selenophosphate synthetase2 from leishmania major
24c2hs0A_



not modelled 100.0 19
PDB header:ligase
Chain: A: PDB Molecule:phosphoribosylformylglycinamidine synthase ii;
PDBTitle: t. maritima purl complexed with atp
25c3d54I_



not modelled 100.0 18
PDB header:ligase
Chain: I: PDB Molecule:phosphoribosylformylglycinamidine synthase ii;
PDBTitle: structure of purlqs from thermotoga maritima
26d3c9ua1



not modelled 100.0 26
Fold:Bacillus chorismate mutase-like
Superfamily:PurM N-terminal domain-like
Family:PurM N-terminal domain-like
27c1t3tA_



not modelled 100.0 18
PDB header:ligase
Chain: A: PDB Molecule:phosphoribosylformylglycinamidine synthase;
PDBTitle: structure of formylglycinamide synthetase
28d1clib1



not modelled 100.0 21
Fold:Bacillus chorismate mutase-like
Superfamily:PurM N-terminal domain-like
Family:PurM N-terminal domain-like
29d1clia1



not modelled 100.0 20
Fold:Bacillus chorismate mutase-like
Superfamily:PurM N-terminal domain-like
Family:PurM N-terminal domain-like
30d2zaua1



not modelled 100.0 15
Fold:Bacillus chorismate mutase-like
Superfamily:PurM N-terminal domain-like
Family:PurM N-terminal domain-like
31d3c9ua2



not modelled 100.0 34
Fold:PurM C-terminal domain-like
Superfamily:PurM C-terminal domain-like
Family:PurM C-terminal domain-like
32d2zoda1



not modelled 100.0 17
Fold:Bacillus chorismate mutase-like
Superfamily:PurM N-terminal domain-like
Family:PurM N-terminal domain-like
33c3mdoB_



not modelled 100.0 17
PDB header:ligase
Chain: B: PDB Molecule:putative phosphoribosylformylglycinamidine cyclo-ligase;
PDBTitle: crystal structure of a putative phosphoribosylformylglycinamidine2 cyclo-ligase (bdi_2101) from parabacteroides distasonis atcc 8503 at3 1.91 a resolution
34d2z1ea1



not modelled 100.0 24
Fold:Bacillus chorismate mutase-like
Superfamily:PurM N-terminal domain-like
Family:PurM N-terminal domain-like
35d1vk3a2



not modelled 99.9 14
Fold:Bacillus chorismate mutase-like
Superfamily:PurM N-terminal domain-like
Family:PurM N-terminal domain-like
36d2zoda2



not modelled 99.9 15
Fold:PurM C-terminal domain-like
Superfamily:PurM C-terminal domain-like
Family:PurM C-terminal domain-like
37c3kizA_



not modelled 99.9 16
PDB header:ligase
Chain: A: PDB Molecule:phosphoribosylformylglycinamidine cyclo-ligase;
PDBTitle: crystal structure of putative phosphoribosylformylglycinamidine cyclo-2 ligase (yp_676759.1) from cytophaga hutchinsonii atcc 33406 at 1.50 a3 resolution
38d2z1ea2



not modelled 99.9 25
Fold:PurM C-terminal domain-like
Superfamily:PurM C-terminal domain-like
Family:PurM C-terminal domain-like
39d1vk3a1



not modelled 99.9 23
Fold:Bacillus chorismate mutase-like
Superfamily:PurM N-terminal domain-like
Family:PurM N-terminal domain-like
40d1clia2



not modelled 99.9 17
Fold:PurM C-terminal domain-like
Superfamily:PurM C-terminal domain-like
Family:PurM C-terminal domain-like
41d1vk3a3



not modelled 99.8 13
Fold:PurM C-terminal domain-like
Superfamily:PurM C-terminal domain-like
Family:PurM C-terminal domain-like
42d1t3ta4



not modelled 99.6 18
Fold:Bacillus chorismate mutase-like
Superfamily:PurM N-terminal domain-like
Family:PurM N-terminal domain-like
43d1t3ta6



not modelled 99.6 14
Fold:PurM C-terminal domain-like
Superfamily:PurM C-terminal domain-like
Family:PurM C-terminal domain-like
44d1t3ta5



not modelled 99.2 16
Fold:Bacillus chorismate mutase-like
Superfamily:PurM N-terminal domain-like
Family:PurM N-terminal domain-like
45d1t3ta7



not modelled 99.2 23
Fold:PurM C-terminal domain-like
Superfamily:PurM C-terminal domain-like
Family:PurM C-terminal domain-like
46c3fokH_



not modelled 86.2 17
PDB header:structural genomics, unknown function
Chain: H: PDB Molecule:uncharacterized protein cgl0159;
PDBTitle: crystal structure of cgl0159 from corynebacterium2 glutamicum (brevibacterium flavum). northeast structural3 genomics target cgr115
47c3jrkG_



not modelled 84.1 15
PDB header:lyase
Chain: G: PDB Molecule:tagatose 1,6-diphosphate aldolase 2;
PDBTitle: a putative tagatose 1,6-diphosphate aldolase from streptococcus2 pyogenes
48d1to3a_



not modelled 76.9 23
Fold:TIM beta/alpha-barrel
Superfamily:Aldolase
Family:Class I aldolase
49c3qi7A_



not modelled 73.1 16
PDB header:transcription
Chain: A: PDB Molecule:putative transcriptional regulator;
PDBTitle: crystal structure of a putative transcriptional regulator2 (yp_001089212.1) from clostridium difficile 630 at 1.86 a resolution
50c3dzvB_



not modelled 42.9 20
PDB header:transferase
Chain: B: PDB Molecule:4-methyl-5-(beta-hydroxyethyl)thiazole kinase;
PDBTitle: crystal structure of 4-methyl-5-(beta-hydroxyethyl)thiazole kinase2 (np_816404.1) from enterococcus faecalis v583 at 2.57 a resolution
51c2qjhH_



not modelled 42.6 19
PDB header:lyase
Chain: H: PDB Molecule:putative aldolase mj0400;
PDBTitle: m. jannaschii adh synthase covalently bound to2 dihydroxyacetone phosphate
52c4ru1C_



not modelled 41.2 5
PDB header:transport protein
Chain: C: PDB Molecule:monosaccharide abc transporter substrate-binding protein,
PDBTitle: crystal structure of carbohydrate transporter acei_1806 from2 acidothermus cellulolyticus 11b, target efi-510965, in complex with3 myo-inositol
53d2csua1



not modelled 38.6 13
Fold:NAD(P)-binding Rossmann-fold domains
Superfamily:NAD(P)-binding Rossmann-fold domains
Family:CoA-binding domain
54c4mozC_



not modelled 34.1 18
PDB header:lyase
Chain: C: PDB Molecule:fructose-bisphosphate aldolase;
PDBTitle: fructose-bisphosphate aldolase from slackia heliotrinireducens dsm2 20476
55c2hqbA_



not modelled 33.7 16
PDB header:transcription
Chain: A: PDB Molecule:transcriptional activator of comk gene;
PDBTitle: crystal structure of a transcriptional activator of comk2 gene from bacillus halodurans
56c5jxpA_



not modelled 32.7 27
PDB header:hydrolase
Chain: A: PDB Molecule:asp/glu-specific dipeptidyl-peptidase;
PDBTitle: crystal structure of porphyromonas endodontalis dpp11 in alternate2 conformation
57c5jxfA_



not modelled 29.2 27
PDB header:hydrolase
Chain: A: PDB Molecule:asp/glu-specific dipeptidyl-peptidase;
PDBTitle: crystal structure of flavobacterium psychrophilum dpp11 in complex2 with dipeptide arg-asp
58c5kdmD_



not modelled 28.2 15
PDB header:chaperone / dna binding protein
Chain: D: PDB Molecule:major tegument protein;
PDBTitle: crystal structure of ebv tegument protein bnrf1 in complex with2 histone chaperone daxx and histones h3.3-h4
59c3gndC_



not modelled 24.6 18
PDB header:lyase
Chain: C: PDB Molecule:aldolase lsrf;
PDBTitle: crystal structure of e. coli lsrf in complex with ribulose-5-phosphate
60d1fnda1



not modelled 23.3 25
Fold:Reductase/isomerase/elongation factor common domain
Superfamily:Riboflavin synthase domain-like
Family:Ferredoxin reductase FAD-binding domain-like
61d1wf8a1



not modelled 22.5 11
Fold:PDZ domain-like
Superfamily:PDZ domain-like
Family:PDZ domain
62c3g85A_



not modelled 21.4 5
PDB header:transcription regulator
Chain: A: PDB Molecule:transcriptional regulator (laci family);
PDBTitle: crystal structure of laci family transcription regulator from2 clostridium acetobutylicum
63d1v8aa_



not modelled 21.0 29
Fold:Ribokinase-like
Superfamily:Ribokinase-like
Family:Thiamin biosynthesis kinases
64c3eggC_



not modelled 20.7 12
PDB header:hydrolase
Chain: C: PDB Molecule:spinophilin;
PDBTitle: crystal structure of a complex between protein phosphatase 1 alpha2 (pp1) and the pp1 binding and pdz domains of spinophilin
65c3lukB_



not modelled 20.5 9
PDB header:rna binding protein
Chain: B: PDB Molecule:protein argonaute-2;
PDBTitle: crystal structure of mid domain from hago2
66d1gawa1



not modelled 20.1 17
Fold:Reductase/isomerase/elongation factor common domain
Superfamily:Riboflavin synthase domain-like
Family:Ferredoxin reductase FAD-binding domain-like
67c5mvrA_



not modelled 19.9 40
PDB header:transferase
Chain: A: PDB Molecule:trna threonylcarbamoyladenosine biosynthesis protein tsae;
PDBTitle: crystal structure of bacillus subtilus ydib
68d2bmwa1



not modelled 19.8 22
Fold:Reductase/isomerase/elongation factor common domain
Superfamily:Riboflavin synthase domain-like
Family:Ferredoxin reductase FAD-binding domain-like
69c5braA_



not modelled 19.4 14
PDB header:solute-binding protein
Chain: A: PDB Molecule:putative periplasmic binding protein with substrate ribose;
PDBTitle: crystal structure of a putative periplasmic solute binding protein2 (ipr025997) from ochrobactrum anthropi atcc49188 (oant_2843, target3 efi-511085)
70d1htwa_



not modelled 19.4 15
Fold:P-loop containing nucleoside triphosphate hydrolases
Superfamily:P-loop containing nucleoside triphosphate hydrolases
Family:YjeE-like
71c4y01B_



not modelled 18.9 14
PDB header:hydrolase
Chain: B: PDB Molecule:peptidase s46;
PDBTitle: crystal structure of dipeptidyl peptidase 11 (dpp11) from2 porphyromonas gingivalis
72d1ep3b1



not modelled 18.7 32
Fold:Reductase/isomerase/elongation factor common domain
Superfamily:Riboflavin synthase domain-like
Family:Ferredoxin reductase FAD-binding domain-like
73c2jreA_



not modelled 18.3 16
PDB header:de novo protein
Chain: A: PDB Molecule:c60-1 pdz domain peptide;
PDBTitle: c60-1, a pdz domain designed using statistical coupling2 analysis
74c3rotA_



not modelled 18.1 10
PDB header:transport protein
Chain: A: PDB Molecule:abc sugar transporter, periplasmic sugar binding protein;
PDBTitle: crystal structure of abc sugar transporter (periplasmic sugar binding2 protein) from legionella pneumophila
75d2byga1



not modelled 18.0 23
Fold:PDZ domain-like
Superfamily:PDZ domain-like
Family:PDZ domain
76c5f67A_



not modelled 17.9 23
PDB header:protein binding
Chain: A: PDB Molecule:inactivation-no-after-potential d protein;
PDBTitle: an exquisitely specific pdz/target recognition revealed by the2 structure of inad pdz3 in complex with trp channel tail
77c6ndiB_



not modelled 17.7 15
PDB header:sugar binding protein
Chain: B: PDB Molecule:transcriptional regulator;
PDBTitle: 2.60 angstrom resolution crystal structure of periplasmic binding and2 sugar binding domain of laci family protein from klebsiella3 pneumoniae.
78c3wolB_



not modelled 17.5 23
PDB header:hydrolase
Chain: B: PDB Molecule:dipeptidyl aminopeptidase bii;
PDBTitle: crystal structure of the dap bii dipeptide complex i
79d1jyea_



not modelled 17.2 21
Fold:Periplasmic binding protein-like I
Superfamily:Periplasmic binding protein-like I
Family:L-arabinose binding protein-like
80c1jyeA_



not modelled 17.2 21
PDB header:transcription
Chain: A: PDB Molecule:lactose operon repressor;
PDBTitle: structure of a dimeric lac repressor with c-terminal deletion and k84l2 substitution
81c6dspB_



not modelled 17.1 17
PDB header:signaling protein
Chain: B: PDB Molecule:autoinducer 2-binding protein lsrb;
PDBTitle: lsrb from clostridium saccharobutylicum in complex with ai-2
82c3d02A_



not modelled 17.1 3
PDB header:sugar binding protein
Chain: A: PDB Molecule:putative laci-type transcriptional regulator;
PDBTitle: crystal structure of periplasmic sugar-binding protein2 (yp_001338366.1) from klebsiella pneumoniae subsp. pneumoniae mgh3 78578 at 1.30 a resolution
83d2f0aa1



not modelled 16.7 25
Fold:PDZ domain-like
Superfamily:PDZ domain-like
Family:PDZ domain
84d1ujda_



not modelled 16.6 17
Fold:PDZ domain-like
Superfamily:PDZ domain-like
Family:PDZ domain
85c3qz6A_



not modelled 16.6 13
PDB header:lyase
Chain: A: PDB Molecule:hpch/hpai aldolase;
PDBTitle: the crystal structure of hpch/hpai aldolase from desulfitobacterium2 hafniense dcb-2
86d1oi7a1



not modelled 16.0 19
Fold:NAD(P)-binding Rossmann-fold domains
Superfamily:NAD(P)-binding Rossmann-fold domains
Family:CoA-binding domain
87d1x5qa1



not modelled 15.8 23
Fold:PDZ domain-like
Superfamily:PDZ domain-like
Family:PDZ domain
88c6fpeE_



not modelled 15.6 30
PDB header:rna binding protein
Chain: E: PDB Molecule:atpase yjee, predicted to have essential role in cell wall
PDBTitle: bacterial protein complex
89c6hyhA_



not modelled 15.4 17
PDB header:sugar binding protein
Chain: A: PDB Molecule:periplasmic binding protein/laci transcriptional regulator;
PDBTitle: crystal structure of msmeg_1712 from mycobacterium smegmatis in2 complex with beta-d-fucofuranose
90c3gbvB_



not modelled 15.3 9
PDB header:transcription regulator
Chain: B: PDB Molecule:putative laci-family transcriptional regulator;
PDBTitle: crystal structure of a putative laci transcriptional regulator from2 bacteroides fragilis
91d1tjya_



not modelled 14.3 14
Fold:Periplasmic binding protein-like I
Superfamily:Periplasmic binding protein-like I
Family:L-arabinose binding protein-like
92d1wfga_



not modelled 13.9 17
Fold:PDZ domain-like
Superfamily:PDZ domain-like
Family:PDZ domain
93c3dbiA_



not modelled 13.8 13
PDB header:transcription regulator
Chain: A: PDB Molecule:sugar-binding transcriptional regulator, laci family;
PDBTitle: crystal structure of sugar-binding transcriptional regulator (laci2 family) from escherichia coli complexed with phosphate
94c4ywkA_



not modelled 13.8 31
PDB header:cell cycle
Chain: A: PDB Molecule:cell division control protein 21;
PDBTitle: pyrococcus furiosus mcm n-terminal domain with zinc-binding subdomain2 b deleted
95c4wzzA_



not modelled 13.7 10
PDB header:transport protein
Chain: A: PDB Molecule:putative sugar abc transporter, substrate-binding protein;
PDBTitle: crystal structure of an abc transporter solute binding protein2 (ipr025997) from clostridium phytofermentas (cphy_0583, target efi-3 511148) with bound l-rhamnose
96c5hqjA_



not modelled 13.6 15
PDB header:solute-binding protein
Chain: A: PDB Molecule:periplasmic binding protein/laci transcriptional regulator;
PDBTitle: crystal structure of abc transporter solute binding protein b1g1h72 from burkholderia graminis c4d1m, target efi-511179, in complex with3 d-arabinose
97d1whaa_



not modelled 13.6 14
Fold:PDZ domain-like
Superfamily:PDZ domain-like
Family:PDZ domain
98c3d8uA_



not modelled 13.5 6
PDB header:transcription regulator
Chain: A: PDB Molecule:purr transcriptional regulator;
PDBTitle: the crystal structure of a purr family transcriptional regulator from2 vibrio parahaemolyticus rimd 2210633
99c4kzkA_



not modelled 13.5 12
PDB header:sugar binding protein
Chain: A: PDB Molecule:l-arabinose abc transporter, periplasmic l-arabinose-
PDBTitle: the structure of the periplasmic l-arabinose binding protein from2 burkholderia thailandensis

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Transmembrane helix prediction 

Transmembrane helices have been predicted in your sequence to adopt the topology shown below