Phyre Home Retrieve Phyre Job Id
Emailmdejesus@rockefeller.edu
DescriptionRVBD2978c_(-)_3333795_3335174
DateThu Aug 8 16:20:14 BST 2019
Unique Job ID35b620ec8cf0f48c
SequenceMPKFEVPDGW ... Download FASTA
Job Typenormal
Job Expiry

Summary 

Top model
Image coloured by rainbow N → C terminus
Model dimensions (Å):X:54.822 Y:68.930 Z:60.570
Model (left) based on template c5wtiZ_
Top template information
PDB header:hydrolase/dna/rna
Chain: Z: PDB Molecule:crispr-associated protein;
PDBTitle: crystal structure of the crispr-associated protein in complex with2 crrna and dna
Confidence and coverage
Confidence: 98.8% Coverage: 44%
202 residues ( 44% of your sequence) have been modelled with 98.8% confidence by the single highest scoring template.
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Sequence analysis 

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Secondary structure and disorder prediction [Show] 

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#
Template Alignment Coverage3D Model Confidence
% i.d. Template Information
1c5wtiZ_
98.8 23
PDB header:hydrolase/dna/rna
Chain: Z: PDB Molecule:crispr-associated protein;
PDBTitle: crystal structure of the crispr-associated protein in complex with2 crrna and dna
2c6e7aY_
98.7 21
PDB header:dna binding protein/dna/rna
Chain: Y: PDB Molecule:casx;
PDBTitle: casx-grna-dna(30bp) state ii
3c5id6A_
98.1 19
PDB header:hydrolase
Chain: A: PDB Molecule:cpf1;
PDBTitle: structure of cpf1/rna complex
4c6iv6A_
97.9 17
PDB header:immune system/rna
Chain: A: PDB Molecule:nuclease;
PDBTitle: cryo-em structure of acrva5-acetylated mbcas12a in complex with crrna
5c5mgaA_
97.6 18
PDB header:hydrolase
Chain: A: PDB Molecule:crispr-associated endonuclease cpf1;
PDBTitle: structure of the cpf1 endonuclease r-loop complex after dna cleavage
6c5wqeA_
97.5 17
PDB header:rna binding protein
Chain: A: PDB Molecule:crispr-associated endonuclease c2c1;
PDBTitle: crystal structure of alicyclobacillus acidoterrestris c2c1 in complex2 with single-guide rna at 3.1 angstrom resolution
7c5nfvA_
97.4 18
PDB header:hydrolase
Chain: A: PDB Molecule:crispr-associated endonuclease cpf1;
PDBTitle: crystal structure of catalytically inactive fncas12 mutant bound to an2 r-loop structure containing a pre-crrna mimic and full-length dna3 target
8c5b43A_
97.3 21
PDB header:hydrolase/rna/dna
Chain: A: PDB Molecule:crispr-associated endonuclease cpf1;
PDBTitle: crystal structure of acidaminococcus sp. cpf1 in complex with crrna2 and target dna
9c5u31A_
97.0 21
PDB header:hydrolase/dna
Chain: A: PDB Molecule:crispr-associated endonuclease c2c1;
PDBTitle: crystal structure of aacc2c1-sgrna-8mer substrate dna ternary complex
10c2gb5B_
95.0 22
PDB header:hydrolase
Chain: B: PDB Molecule:nadh pyrophosphatase;
PDBTitle: crystal structure of nadh pyrophosphatase (ec 3.6.1.22) (1790429) from2 escherichia coli k12 at 2.30 a resolution
11d1hk8a_
93.9 13
Fold:PFL-like glycyl radical enzymes
Superfamily:PFL-like glycyl radical enzymes
Family:Class III anaerobic ribonucleotide reductase NRDD subunit
12c1hk8A_
93.9 13
PDB header:oxidoreductase
Chain: A: PDB Molecule:anaerobic ribonucleotide-triphosphate reductase;
PDBTitle: structural basis for allosteric substrate specificity regulation in2 class iii ribonucleotide reductases: nrdd in complex with dgtp
13c4u3eA_
93.9 17
PDB header:oxidoreductase
Chain: A: PDB Molecule:ribonucleoside triphosphate reductase;
PDBTitle: anaerobic ribonucleotide reductase
14c5fz5M_
92.3 17
PDB header:transcription
Chain: M: PDB Molecule:transcription initiation factor iib;
PDBTitle: transcription initiation complex structures elucidate dna opening (cc)
15c3ky9B_
91.5 19
PDB header:apoptosis
Chain: B: PDB Molecule:proto-oncogene vav;
PDBTitle: autoinhibited vav1
16c4a17Y_
91.4 23
PDB header:ribosome
Chain: Y: PDB Molecule:rpl37a;
PDBTitle: t.thermophila 60s ribosomal subunit in complex with2 initiation factor 6. this file contains 5s rrna,3 5.8s rrna and proteins of molecule 2.
17c1yuzB_
91.4 24
PDB header:oxidoreductase
Chain: B: PDB Molecule:nigerythrin;
PDBTitle: partially reduced state of nigerythrin
18d2akla2
91.4 16
Fold:Rubredoxin-like
Superfamily:Zinc beta-ribbon
Family:PhnA zinc-binding domain
19c2qa4Z_
91.3 27
PDB header:ribosome
Chain: Z: PDB Molecule:50s ribosomal protein l37ae;
PDBTitle: a more complete structure of the the l7/l12 stalk of the2 haloarcula marismortui 50s large ribosomal subunit
20c2aklA_
91.0 14
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:phna-like protein pa0128;
PDBTitle: solution structure for phn-a like protein pa0128 from2 pseudomonas aeruginosa
21c2vrwB_
not modelled 91.0 20
PDB header:signaling protein
Chain: B: PDB Molecule:proto-oncogene vav;
PDBTitle: critical structural role for the ph and c1 domains of the2 vav1 exchange factor
22c4b6ap_
not modelled 91.0 23
PDB header:ribosome
Chain: P: PDB Molecule:60s ribosomal protein l17-a;
PDBTitle: cryo-em structure of the 60s ribosomal subunit in complex2 with arx1 and rei1
23c5iy9M_
not modelled 91.0 18
PDB header:transcription, transferase/dna/rna
Chain: M: PDB Molecule:transcription initiation factor iib;
PDBTitle: human holo-pic in the initial transcribing state (no iis)
24d1pfta_
not modelled 90.7 24
Fold:Rubredoxin-like
Superfamily:Zinc beta-ribbon
Family:Transcriptional factor domain
25c3cc4Z_
not modelled 90.6 27
PDB header:ribosome
Chain: Z: PDB Molecule:50s ribosomal protein l37ae;
PDBTitle: co-crystal structure of anisomycin bound to the 50s ribosomal subunit
26d1vqoz1
not modelled 90.6 27
Fold:Rubredoxin-like
Superfamily:Zn-binding ribosomal proteins
Family:Ribosomal protein L37ae
27d1ffkw_
not modelled 90.6 19
Fold:Rubredoxin-like
Superfamily:Zn-binding ribosomal proteins
Family:Ribosomal protein L37ae
28c3izrm_
not modelled 90.6 23
PDB header:ribosome
Chain: M: PDB Molecule:60s ribosomal protein l23 (l14p);
PDBTitle: localization of the large subunit ribosomal proteins into a 5.5 a2 cryo-em map of triticum aestivum translating 80s ribosome
29c3zf7o_
not modelled 90.6 27
PDB header:ribosome
Chain: O: PDB Molecule:60s ribosomal protein l13a, putative;
PDBTitle: high-resolution cryo-electron microscopy structure of the trypanosoma2 brucei ribosome
30c6f42V_
not modelled 90.6 23
PDB header:transcription
Chain: V: PDB Molecule:transcription factor iiib 70 kda subunit;
PDBTitle: rna polymerase iii closed complex cc1.
31c3j39p_
not modelled 90.4 27
PDB header:ribosome
Chain: P: PDB Molecule:60s ribosomal protein l17;
PDBTitle: structure of the d. melanogaster 60s ribosomal proteins
32c3j21i_
not modelled 90.4 27
PDB header:ribosome
Chain: I: PDB Molecule:50s ribosomal protein l13p;
PDBTitle: promiscuous behavior of proteins in archaeal ribosomes revealed by2 cryo-em: implications for evolution of eukaryotic ribosomes (50s3 ribosomal proteins)
33c2zkrz_
not modelled 90.2 23
PDB header:ribosomal protein/rna
Chain: Z: PDB Molecule:e site t-rna;
PDBTitle: structure of a mammalian ribosomal 60s subunit within an 80s complex2 obtained by docking homology models of the rna and proteins into an3 8.7 a cryo-em map
34d1jj2y_
not modelled 90.1 19
Fold:Rubredoxin-like
Superfamily:Zn-binding ribosomal proteins
Family:Ribosomal protein L37ae
35c3k1fM_
not modelled 89.9 17
PDB header:transcription
Chain: M: PDB Molecule:transcription initiation factor iib;
PDBTitle: crystal structure of rna polymerase ii in complex with tfiib
36c1yshD_
not modelled 89.9 23
PDB header:structural protein/rna
Chain: D: PDB Molecule:ribosomal protein l37a;
PDBTitle: localization and dynamic behavior of ribosomal protein l30e
37c3bjiA_
not modelled 89.7 21
PDB header:signaling protein
Chain: A: PDB Molecule:proto-oncogene vav;
PDBTitle: structural basis of promiscuous guanine nucleotide exchange2 by the t-cell essential vav1
38c4v1oM_
not modelled 89.7 22
PDB header:transcription
Chain: M: PDB Molecule:transcription initiation factor iib;
PDBTitle: architecture of the rna polymerase ii-mediator core transcription2 initiation complex
39c3k7aM_
not modelled 89.6 19
PDB header:transcription
Chain: M: PDB Molecule:transcription initiation factor iib;
PDBTitle: crystal structure of an rna polymerase ii-tfiib complex
40c2hr5B_
not modelled 89.6 24
PDB header:metal binding protein
Chain: B: PDB Molecule:rubrerythrin;
PDBTitle: pf1283- rubrerythrin from pyrococcus furiosus iron bound form
41c3cngC_
not modelled 89.5 21
PDB header:hydrolase
Chain: C: PDB Molecule:nudix hydrolase;
PDBTitle: crystal structure of nudix hydrolase from nitrosomonas europaea
42c1s1i9_
not modelled 89.0 23
PDB header:ribosome
Chain: 9: PDB Molecule:60s ribosomal protein l43;
PDBTitle: structure of the ribosomal 80s-eef2-sordarin complex from yeast2 obtained by docking atomic models for rna and protein components into3 a 11.7 a cryo-em map. this file, 1s1i, contains 60s subunit. the 40s4 ribosomal subunit is in file 1s1h.
43d1dl6a_
not modelled 88.6 19
Fold:Rubredoxin-like
Superfamily:Zinc beta-ribbon
Family:Transcriptional factor domain
44c6cnbR_
not modelled 88.5 22
PDB header:transcription/dna
Chain: R: PDB Molecule:transcription factor iiib 70 kda subunit,tata-box-binding
PDBTitle: yeast rna polymerase iii initial transcribing complex
45d1twfi2
not modelled 88.5 27
Fold:Rubredoxin-like
Superfamily:Zinc beta-ribbon
Family:Transcriptional factor domain
46c1dvbA_
not modelled 87.7 33
PDB header:electron transport
Chain: A: PDB Molecule:rubrerythrin;
PDBTitle: rubrerythrin
47c3jyw9_
not modelled 87.7 23
PDB header:ribosome
Chain: 9: PDB Molecule:60s ribosomal protein l43;
PDBTitle: structure of the 60s proteins for eukaryotic ribosome based on cryo-em2 map of thermomyces lanuginosus ribosome at 8.9a resolution
48c3wwnB_
not modelled 87.3 23
PDB header:metal binding protein/transferase
Chain: B: PDB Molecule:orff;
PDBTitle: crystal structure of lysz from thermus thermophilus complex with lysw
49c2qkdA_
not modelled 86.9 19
PDB header:signaling protein, cell cycle
Chain: A: PDB Molecule:zinc finger protein zpr1;
PDBTitle: crystal structure of tandem zpr1 domains
50d2fiya1
not modelled 86.9 19
Fold:FdhE-like
Superfamily:FdhE-like
Family:FdhE-like
51c1i3qI_
not modelled 86.0 22
PDB header:transcription
Chain: I: PDB Molecule:dna-directed rna polymerase ii 14.2kd
PDBTitle: rna polymerase ii crystal form i at 3.1 a resolution
52c2lcqA_
not modelled 85.6 12
PDB header:metal binding protein
Chain: A: PDB Molecule:putative toxin vapc6;
PDBTitle: solution structure of the endonuclease nob1 from p.horikoshii
53c5ijlA_
not modelled 85.3 24
PDB header:transferase
Chain: A: PDB Molecule:dna polymerase ii large subunit;
PDBTitle: d-family dna polymerase - dp2 subunit (catalytic subunit)
54c1nnjA_
not modelled 85.3 11
PDB header:hydrolase
Chain: A: PDB Molecule:formamidopyrimidine-dna glycosylase;
PDBTitle: crystal structure complex between the lactococcus lactis fpg and an2 abasic site containing dna
55c6g5iy_
not modelled 85.1 24
PDB header:ribosome
Chain: Y: PDB Molecule:40s ribosomal protein s24;
PDBTitle: cryo-em structure of a late human pre-40s ribosomal subunit - state r
56c4c2mX_
not modelled 85.1 14
PDB header:transcription
Chain: X: PDB Molecule:dna-directed rna polymerase i subunit rpa12;
PDBTitle: structure of rna polymerase i at 2.8 a resolution
57c5flmI_
not modelled 84.7 17
PDB header:transcription
Chain: I: PDB Molecule:dna-directed rna polymerase ii subunit rpb9;
PDBTitle: structure of transcribing mammalian rna polymerase ii
58c2opfA_
not modelled 84.2 16
PDB header:hydrolase/dna
Chain: A: PDB Molecule:endonuclease viii;
PDBTitle: crystal structure of the dna repair enzyme endonuclease-viii (nei)2 from e. coli (r252a) in complex with ap-site containing dna substrate
59c2ba1B_
not modelled 84.2 22
PDB header:rna binding protein
Chain: B: PDB Molecule:archaeal exosome rna binding protein csl4;
PDBTitle: archaeal exosome core
60c3zyqA_
not modelled 83.7 21
PDB header:signaling
Chain: A: PDB Molecule:hepatocyte growth factor-regulated tyrosine kinase
PDBTitle: crystal structure of the tandem vhs and fyve domains of hepatocyte2 growth factor-regulated tyrosine kinase substrate (hgs-hrs) at 1.48 a3 resolution
61c5iy9Q_
not modelled 83.3 22
PDB header:transcription, transferase/dna/rna
Chain: Q: PDB Molecule:general transcription factor iie subunit 1;
PDBTitle: human holo-pic in the initial transcribing state (no iis)
62c2f9iD_
not modelled 83.0 16
PDB header:transferase
Chain: D: PDB Molecule:acetyl-coenzyme a carboxylase carboxyl transferase subunit
PDBTitle: crystal structure of the carboxyltransferase subunit of acc from2 staphylococcus aureus
63c2kdxA_
not modelled 82.2 26
PDB header:metal-binding protein
Chain: A: PDB Molecule:hydrogenase/urease nickel incorporation protein
PDBTitle: solution structure of hypa protein
64c1ee8A_
not modelled 82.1 26
PDB header:dna binding protein
Chain: A: PDB Molecule:mutm (fpg) protein;
PDBTitle: crystal structure of mutm (fpg) protein from thermus thermophilus hb8
65c1pqvS_
not modelled 82.0 20
PDB header:transferase/transcription
Chain: S: PDB Molecule:transcription elongation factor s-ii;
PDBTitle: rna polymerase ii-tfiis complex
66d2k4xa1
not modelled 82.0 22
Fold:Rubredoxin-like
Superfamily:Zn-binding ribosomal proteins
Family:Ribosomal protein S27a
67c1dvpA_
not modelled 81.8 21
PDB header:transferase
Chain: A: PDB Molecule:hepatocyte growth factor-regulated tyrosine
PDBTitle: crystal structure of the vhs and fyve tandem domains of hrs,2 a protein involved in membrane trafficking and signal3 transduction
68c6hmsB_
not modelled 81.8 22
PDB header:replication
Chain: B: PDB Molecule:dna polymerase ii large subunit,dna polymerase ii large
PDBTitle: cryo-em map of dna polymerase d from pyrococcus abyssi in complex with2 dna
69c1y1yS_
not modelled 81.8 20
PDB header:transferase/transcription/dna-rna hybrid
Chain: S: PDB Molecule:transcription elongation factor s-ii;
PDBTitle: rna polymerase ii-tfiis-dna/rna complex
70c1k82D_
not modelled 81.4 15
PDB header:hydrolase/dna
Chain: D: PDB Molecule:formamidopyrimidine-dna glycosylase;
PDBTitle: crystal structure of e.coli formamidopyrimidine-dna2 glycosylase (fpg) covalently trapped with dna
71c4ifdI_
not modelled 80.7 4
PDB header:hydrolase/rna
Chain: I: PDB Molecule:exosome complex component csl4;
PDBTitle: crystal structure of an 11-subunit eukaryotic exosome complex bound to2 rna
72c2f9yB_
not modelled 80.4 20
PDB header:ligase
Chain: B: PDB Molecule:acetyl-coenzyme a carboxylase carboxyl transferase subunit
PDBTitle: the crystal structure of the carboxyltransferase subunit of acc from2 escherichia coli
73d2f9yb1
not modelled 80.4 20
Fold:ClpP/crotonase
Superfamily:ClpP/crotonase
Family:Biotin dependent carboxylase carboxyltransferase domain
74c5xonU_
not modelled 79.5 19
PDB header:transcription/rna
Chain: U: PDB Molecule:general transcription elongation factor tfiis;
PDBTitle: rna polymerase ii elongation complex bound with spt4/5 and tfiis
75c2f5qA_
not modelled 78.9 22
PDB header:hydrolase/dna
Chain: A: PDB Molecule:formamidopyrimidine-dna glycosidase;
PDBTitle: catalytically inactive (e3q) mutm crosslinked to oxog:c2 containing dna cc2
76c2nn6I_
not modelled 78.8 11
PDB header:hydrolase/transferase
Chain: I: PDB Molecule:3'-5' exoribonuclease csl4 homolog;
PDBTitle: structure of the human rna exosome composed of rrp41, rrp45,2 rrp46, rrp43, mtr3, rrp42, csl4, rrp4, and rrp40
77c5fywW_
not modelled 78.7 13
PDB header:transcription
Chain: W: PDB Molecule:transcription initiation factor iie subunit alpha;
PDBTitle: transcription initiation complex structures elucidate dna opening (oc)
78d2ct7a1
not modelled 78.7 17
Fold:RING/U-box
Superfamily:RING/U-box
Family:IBR domain
79c5x51X_
not modelled 78.6 24
PDB header:transferase
Chain: X: PDB Molecule:rna polymerase subunit, found in rna polymerase complexes
PDBTitle: rna polymerase ii from komagataella pastoris (type-3 crystal)
80c4bpo9_
not modelled 78.5 21
PDB header:ribosome
Chain: 9: PDB Molecule:40s ribosomal protein rps31e;
PDBTitle: the crystal structure of the eukaryotic 40s ribosomal subunit in2 complex with eif1 and eif1a - complex 3
81c1kcfB_
not modelled 78.4 14
PDB header:hydrolase
Chain: B: PDB Molecule:hypothetical 30.2 kd protein c25g10.02 in
PDBTitle: crystal structure of the yeast mitochondrial holliday2 junction resolvase, ydc2
82c3h0gI_
not modelled 78.0 13
PDB header:transcription
Chain: I: PDB Molecule:dna-directed rna polymerase ii subunit rpb9;
PDBTitle: rna polymerase ii from schizosaccharomyces pombe
83c4rvgA_
not modelled 77.9 19
PDB header:transferase
Chain: A: PDB Molecule:d-mycarose 3-c-methyltransferase;
PDBTitle: crystal structure of mtmc in complex with sam and tdp
84c3ndjA_
not modelled 77.8 31
PDB header:transferase
Chain: A: PDB Molecule:methyltransferase;
PDBTitle: x-ray structure of a c-3'-methyltransferase in complex with s-2 adenosyl-l-homocysteine and sugar product
85c2xzn9_
not modelled 77.7 16
PDB header:ribosome
Chain: 9: PDB Molecule:rps31e;
PDBTitle: crystal structure of the eukaryotic 40s ribosomal2 subunit in complex with initiation factor 1. this file3 contains the 40s subunit and initiation factor for4 molecule 2
86c2xzm9_
not modelled 77.5 16
PDB header:ribosome
Chain: 9: PDB Molecule:rps31e;
PDBTitle: crystal structure of the eukaryotic 40s ribosomal2 subunit in complex with initiation factor 1. this file3 contains the 40s subunit and initiation factor for4 molecule 1
87c5iycU_
not modelled 77.0 20
PDB header:transcription, transferase/dna
Chain: U: PDB Molecule:transcription elongation factor a protein 1;
PDBTitle: human core-pic in the initial transcribing state
88c2eliA_
not modelled 76.8 18
PDB header:transferase
Chain: A: PDB Molecule:protein kinase c alpha type;
PDBTitle: solution structure of the second phorbol2 esters/diacylglycerol binding domain of human protein3 kinase c alpha type
89c3pfqA_
not modelled 76.6 18
PDB header:transferase
Chain: A: PDB Molecule:protein kinase c beta type;
PDBTitle: crystal structure and allosteric activation of protein kinase c beta2 ii
90c2nb9A_
not modelled 76.6 26
PDB header:unknown function
Chain: A: PDB Molecule:uncharacterized protein;
PDBTitle: solution structure of zitp zinc finger
91d1kcfa2
not modelled 76.1 18
Fold:Ribonuclease H-like motif
Superfamily:Ribonuclease H-like
Family:Mitochondrial resolvase ydc2 catalytic domain
92c3h0gL_
not modelled 75.9 24
PDB header:transcription
Chain: L: PDB Molecule:dna-directed rna polymerases i, ii, and iii subunit rpabc4;
PDBTitle: rna polymerase ii from schizosaccharomyces pombe
93c3gn5B_
not modelled 75.8 14
PDB header:dna binding protein
Chain: B: PDB Molecule:hth-type transcriptional regulator mqsa (ygit/b3021);
PDBTitle: structure of the e. coli protein mqsa (ygit/b3021)
94c5flmL_
not modelled 75.7 20
PDB header:transcription
Chain: L: PDB Molecule:dna-directed rna polymerases i, ii, and iii subunit rpabc4;
PDBTitle: structure of transcribing mammalian rna polymerase ii
95c2ja6L_
not modelled 75.6 16
PDB header:transferase
Chain: L: PDB Molecule:dna-directed rna polymerases i, ii, and iii 7.7 kda
PDBTitle: cpd lesion containing rna polymerase ii elongation complex b
96d1yuza2
not modelled 75.5 24
Fold:Rubredoxin-like
Superfamily:Rubredoxin-like
Family:Rubredoxin
97d1nnqa2
not modelled 75.3 24
Fold:Rubredoxin-like
Superfamily:Rubredoxin-like
Family:Rubredoxin
98c1nuiA_
not modelled 75.1 18
PDB header:replication
Chain: A: PDB Molecule:dna primase/helicase;
PDBTitle: crystal structure of the primase fragment of bacteriophage t7 primase-2 helicase protein
99c3w0fA_
not modelled 74.7 24
PDB header:hydrolase
Chain: A: PDB Molecule:endonuclease 8-like 3;
PDBTitle: crystal structure of mouse endonuclease viii-like 3 (mneil3)
100c5fjaI_
not modelled 74.1 14
PDB header:transcription
Chain: I: PDB Molecule:dna-directed rna polymerase iii subunit rpc10;
PDBTitle: cryo-em structure of yeast rna polymerase iii at 4.7 a
101d1lkoa2
not modelled 73.9 22
Fold:Rubredoxin-like
Superfamily:Rubredoxin-like
Family:Rubredoxin
102c2enzA_
not modelled 73.3 18
PDB header:transferase
Chain: A: PDB Molecule:protein kinase c theta type;
PDBTitle: solution structure of the second c1 domain from human2 protein kinase c theta
103d1tfia_
not modelled 72.9 21
Fold:Rubredoxin-like
Superfamily:Zinc beta-ribbon
Family:Transcriptional factor domain
104c2ennA_
not modelled 72.8 21
PDB header:transferase
Chain: A: PDB Molecule:protein kinase c theta type;
PDBTitle: solution structure of the first c1 domain from human2 protein kinase c theta
105d1tbna_
not modelled 72.7 18
Fold:Cysteine-rich domain
Superfamily:Cysteine-rich domain
Family:Protein kinase cysteine-rich domain (cys2, phorbol-binding domain)
106c1pd0A_
not modelled 72.6 26
PDB header:transport protein
Chain: A: PDB Molecule:protein transport protein sec24;
PDBTitle: crystal structure of the copii coat subunit, sec24,2 complexed with a peptide from the snare protein sed53 (yeast syntaxin-5)
107d1x3za1
not modelled 72.5 32
Fold:Cysteine proteinases
Superfamily:Cysteine proteinases
Family:Transglutaminase core
108d1ptqa_
not modelled 72.3 15
Fold:Cysteine-rich domain
Superfamily:Cysteine-rich domain
Family:Protein kinase cysteine-rich domain (cys2, phorbol-binding domain)
109c6gymW_
not modelled 72.2 23
PDB header:transcription
Chain: W: PDB Molecule:transcription initiation factor iie subunit alpha,
PDBTitle: structure of a yeast closed complex with distorted dna (ccdist)
110c5oqjW_
not modelled 71.8 23
PDB header:transcription
Chain: W: PDB Molecule:transcription initiation factor iie subunit alpha;
PDBTitle: structure of yeast transcription pre-initiation complex with tfiih
111c6o3pA_
not modelled 71.4 19
PDB header:hydrolase
Chain: A: PDB Molecule:peroxisomal nadh pyrophosphatase nudt12;
PDBTitle: crystal structure of the catalytic domain of mouse nudt12 in complex2 with amp and 3 mg2+ ions
112d1xa6a3
not modelled 71.2 15
Fold:Cysteine-rich domain
Superfamily:Cysteine-rich domain
Family:Protein kinase cysteine-rich domain (cys2, phorbol-binding domain)
113d2j0151
not modelled 70.8 21
Fold:Rubredoxin-like
Superfamily:Zn-binding ribosomal proteins
Family:Ribosomal protein L32p
114c3bvoA_
not modelled 70.4 21
PDB header:chaperone
Chain: A: PDB Molecule:co-chaperone protein hscb, mitochondrial precursor;
PDBTitle: crystal structure of human co-chaperone protein hscb
115c1y8fA_
not modelled 70.1 15
PDB header:endocytosis/exocytosis,signaling protein
Chain: A: PDB Molecule:unc-13 homolog a;
PDBTitle: solution structure of the munc13-1 c1-domain
116d1zbdb_
not modelled 70.1 13
Fold:FYVE/PHD zinc finger
Superfamily:FYVE/PHD zinc finger
Family:FYVE, a phosphatidylinositol-3-phosphate binding domain
117c2pziA_
not modelled 69.9 14
PDB header:transferase
Chain: A: PDB Molecule:probable serine/threonine-protein kinase pkng;
PDBTitle: crystal structure of protein kinase pkng from mycobacterium2 tuberculosis in complex with tetrahydrobenzothiophene ax20017
118d1qypa_
not modelled 69.9 27
Fold:Rubredoxin-like
Superfamily:Zinc beta-ribbon
Family:Transcriptional factor domain
119c1m2vB_
not modelled 69.2 26
PDB header:protein transport
Chain: B: PDB Molecule:protein transport protein sec24;
PDBTitle: crystal structure of the yeast sec23/24 heterodimer
120d2nn6i1
not modelled 69.1 11
Fold:OB-fold
Superfamily:Nucleic acid-binding proteins
Family:Cold shock DNA-binding domain-like

Binding site prediction 

Due to computational demand, binding site predictions are not run for batch jobs

If you want to predict binding sites, please manually submit your model of choice to 3DLigandSite