Phyre Home Retrieve Phyre Job Id
Emailmdejesus@rockefeller.edu
DescriptionRVBD2979c_(-)_3335174_3335758
DateThu Aug 8 16:20:14 BST 2019
Unique Job IDe0d9d0810cea61d8
SequenceMNLATWAERN ... Download FASTA
Job Typenormal
Job Expiry

Summary 

Top model
Image coloured by rainbow N → C terminus
Model dimensions (Å):X:35.094 Y:40.813 Z:49.818
Model (left) based on template c6dgbA_
Top template information
PDB header:hydrolase
Chain: A: PDB Molecule:is607 family transposase is1535;
PDBTitle: crystal structure of the c-terminal catalytic domain of is1535 tnpa,2 an is607-like serine recombinase
Confidence and coverage
Confidence:100.0% Coverage: 69%
133 residues ( 69% of your sequence) have been modelled with 100.0% confidence by the single highest scoring template.
Additional confident templates have been detected (see Domain analysis) which cover other regions of your sequence.
191 residues ( 98%) could be modelled at >90% confidence using multiple-templates.
You may wish to try resubmitting your sequence in "intensive" mode to model more of your sequence.
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Sequence analysis 

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Secondary structure and disorder prediction [Show] 

Domain analysis [Show] 

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#
Template Alignment Coverage3D Model Confidence
% i.d. Template Information
1c6dgbA_
100.0 57
PDB header:hydrolase
Chain: A: PDB Molecule:is607 family transposase is1535;
PDBTitle: crystal structure of the c-terminal catalytic domain of is1535 tnpa,2 an is607-like serine recombinase
2c3lhkA_
100.0 22
PDB header:dna binding protein
Chain: A: PDB Molecule:putative dna binding protein mj0014;
PDBTitle: crystal structure of putative dna binding protein from2 methanocaldococcus jannaschii.
3c3lhfC_
100.0 35
PDB header:recombination
Chain: C: PDB Molecule:serine recombinase;
PDBTitle: the crystal structure of a serine recombinase from sulfolobus2 solfataricus to 2.3a
4c6dgcA_
99.9 33
PDB header:hydrolase
Chain: A: PDB Molecule:isc1926 tnpa c-terminal catalytic domain;
PDBTitle: crystal structure of the c-terminal catalytic domain of isc1926 tnpa,2 an is607-like serine recombinase
5c3guvA_
99.8 19
PDB header:recombination
Chain: A: PDB Molecule:site-specific recombinase, resolvase family protein;
PDBTitle: crystal structure of a resolvase family site-specific recombinase from2 streptococcus pneumoniae
6c3g13B_
99.8 16
PDB header:recombination
Chain: B: PDB Molecule:putative conjugative transposon recombinase;
PDBTitle: crystal structure of putative conjugative transposon recombinase from2 clostridium difficile
7d1gdta2
99.8 23
Fold:Resolvase-like
Superfamily:Resolvase-like
Family:gamma,delta resolvase, catalytic domain
8c3bvpB_
99.8 20
PDB header:recombination
Chain: B: PDB Molecule:tp901-1 integrase;
PDBTitle: crystal structure of the n-terminal catalytic domain of tp901-12 integrase
9d2gm4a2
99.7 22
Fold:Resolvase-like
Superfamily:Resolvase-like
Family:gamma,delta resolvase, catalytic domain
10c2mhcA_
99.7 17
PDB header:recombination
Chain: A: PDB Molecule:tnpx;
PDBTitle: nmr structure of the catalytic domain of the large serine resolvase2 tnpx
11c2gm4B_
99.7 26
PDB header:recombination, dna
Chain: B: PDB Molecule:transposon gamma-delta resolvase;
PDBTitle: an activated, tetrameric gamma-delta resolvase: hin chimaera bound to2 cleaved dna
12c4bqqB_
99.7 22
PDB header:hydrolase
Chain: B: PDB Molecule:integrase;
PDBTitle: protein crystal structure of the n-terminal and recombinase domains of2 the streptomyces temperate phage serine recombinase, fc31 integrase.
13c3ploX_
99.7 17
PDB header:recombination
Chain: X: PDB Molecule:dna-invertase;
PDBTitle: crystal structure of the fis-independent mutant of gin
14d2rsla_
99.7 22
Fold:Resolvase-like
Superfamily:Resolvase-like
Family:gamma,delta resolvase, catalytic domain
15c3pkzK_
99.6 22
PDB header:recombination
Chain: K: PDB Molecule:recombinase sin;
PDBTitle: structural basis for catalytic activation of a serine recombinase
16d1hx7a_
99.5 27
Fold:Resolvase-like
Superfamily:Resolvase-like
Family:gamma,delta resolvase, catalytic domain
17c2r0qF_
99.5 20
PDB header:recombination/dna
Chain: F: PDB Molecule:putative transposon tn552 dna-invertase bin3;
PDBTitle: crystal structure of a serine recombinase- dna regulatory2 complex
18c4m6fA_
99.5 20
PDB header:hydrolase/dna
Chain: A: PDB Molecule:dna-invertase;
PDBTitle: dimer of the g-segment invertase bound to a dna substrate
19c5i44E_
99.0 26
PDB header:dna binding protein/dna
Chain: E: PDB Molecule:chromosome-anchoring protein raca;
PDBTitle: structure of raca-dna complex; p21 form
20c6amaO_
98.9 26
PDB header:dna binding protein/dna
Chain: O: PDB Molecule:putative dna-binding protein;
PDBTitle: structure of s. coelicolor/s. venezuelae bldc-smea-ssfa complex to2 3.09 angstrom
21c2zhhA_
not modelled 98.9 16
PDB header:transcription
Chain: A: PDB Molecule:redox-sensitive transcriptional activator soxr;
PDBTitle: crystal structure of soxr
22c3qaoA_
not modelled 98.8 23
PDB header:transcription regulator
Chain: A: PDB Molecule:merr-like transcriptional regulator;
PDBTitle: the crystal structure of the n-terminal domain of a merr-like2 transcriptional regulator from listeria monocytogenes egd-e
23c4r24B_
not modelled 98.8 14
PDB header:transcrption/dna
Chain: B: PDB Molecule:hth-type transcriptional regulator tnra;
PDBTitle: complete dissection of b. subtilis nitrogen homeostatic circuitry
24c3gp4B_
not modelled 98.8 23
PDB header:transcription regulator
Chain: B: PDB Molecule:transcriptional regulator, merr family;
PDBTitle: crystal structure of putative merr family transcriptional regulator2 from listeria monocytogenes
25c2vz4A_
not modelled 98.7 19
PDB header:transcription
Chain: A: PDB Molecule:hth-type transcriptional activator tipa;
PDBTitle: the n-terminal domain of merr-like protein tipal bound to promoter dna
26d1q06a_
not modelled 98.7 17
Fold:Putative DNA-binding domain
Superfamily:Putative DNA-binding domain
Family:DNA-binding N-terminal domain of transcription activators
27c4r4eA_
not modelled 98.7 7
PDB header:transcription regulator/dna
Chain: A: PDB Molecule:hth-type transcriptional regulator glnr;
PDBTitle: structure of glnr-dna complex
28d1r8da_
not modelled 98.6 21
Fold:Putative DNA-binding domain
Superfamily:Putative DNA-binding domain
Family:DNA-binding N-terminal domain of transcription activators
29c3hh0C_
not modelled 98.6 12
PDB header:transcription regulator
Chain: C: PDB Molecule:transcriptional regulator, merr family;
PDBTitle: crystal structure of a transcriptional regulator, merr family from2 bacillus cereus
30c3gpvA_
not modelled 98.5 14
PDB header:transcription regulator
Chain: A: PDB Molecule:transcriptional regulator, merr family;
PDBTitle: crystal structure of a transcriptional regulator, merr2 family from bacillus thuringiensis
31c5c8eC_
not modelled 98.5 17
PDB header:transcription regulator/dna
Chain: C: PDB Molecule:light-dependent transcriptional regulator carh;
PDBTitle: crystal structure of thermus thermophilus carh bound to2 adenosylcobalamin and a 26-bp dna segment
32c5gpeB_
not modelled 98.5 13
PDB header:transcription
Chain: B: PDB Molecule:transcriptional regulator, merr-family;
PDBTitle: crystal structure of the transcription regulator pbrr691 from2 ralstonia metallidurans ch34 in complex with lead(ii)
33d1r8ea1
not modelled 98.5 7
Fold:Putative DNA-binding domain
Superfamily:Putative DNA-binding domain
Family:DNA-binding N-terminal domain of transcription activators
34c5xqlA_
not modelled 98.4 14
PDB header:transcription
Chain: A: PDB Molecule:multidrug-efflux transporter 1 regulator;
PDBTitle: crystal structure of a pseudomonas aeruginosa transcriptional2 regulator
35c3d6zA_
not modelled 98.4 7
PDB header:transcription regulator/dna
Chain: A: PDB Molecule:multidrug-efflux transporter 1 regulator;
PDBTitle: crystal structure of r275e mutant of bmrr bound to dna and rhodamine
36c4j2nA_
not modelled 98.4 16
PDB header:viral protein
Chain: A: PDB Molecule:gp37;
PDBTitle: crystal structure of mycobacteriophage pukovnik xis
37c4j2nB_
not modelled 98.4 16
PDB header:viral protein
Chain: B: PDB Molecule:gp37;
PDBTitle: crystal structure of mycobacteriophage pukovnik xis
38c3ucsB_
not modelled 98.4 12
PDB header:chaperone
Chain: B: PDB Molecule:chaperone-modulator protein cbpm;
PDBTitle: crystal structure of the complex between cbpa j-domain and cbpm
39c2jmlA_
not modelled 98.2 19
PDB header:transcription
Chain: A: PDB Molecule:dna binding domain/transcriptional regulator;
PDBTitle: solution structure of the n-terminal domain of cara repressor
40c5af3A_
not modelled 98.1 14
PDB header:dna binding
Chain: A: PDB Molecule:vapbc49;
PDBTitle: x-ray crystal structure of rv2018 from mycobacterium tuberculosis
41c5crlA_
not modelled 98.0 23
PDB header:metal binding protein
Chain: A: PDB Molecule:mercuric resistance operon regulatory protein;
PDBTitle: crystal structure of the transcription activator tn501 merr in complex2 with mercury (ii)
42c2dg6A_
not modelled 97.2 31
PDB header:gene regulation
Chain: A: PDB Molecule:putative transcriptional regulator;
PDBTitle: crystal structure of the putative transcriptional regulator sco55502 from streptomyces coelicolor a3(2)
43c4ua2B_
not modelled 96.3 17
PDB header:dna binding protein
Chain: B: PDB Molecule:regulatory protein;
PDBTitle: crystal structure of dual function transcriptional regulator merr from2 bacillus megaterium mb1
44c1z4hA_
not modelled 96.0 16
PDB header:protein binding, dna binding protein
Chain: A: PDB Molecule:tor inhibition protein;
PDBTitle: the response regulator tori belongs to a new family of2 atypical excisionase
45c2kfsA_
not modelled 96.0 30
PDB header:dna-binding protein
Chain: A: PDB Molecule:conserved hypothetical regulatory protein;
PDBTitle: nmr structure of rv2175c
46d1pm6a_
not modelled 95.9 25
Fold:Putative DNA-binding domain
Superfamily:Putative DNA-binding domain
Family:Excisionase-like
47d1rh6a_
not modelled 94.9 25
Fold:Putative DNA-binding domain
Superfamily:Putative DNA-binding domain
Family:Excisionase-like
48d2jn6a1
not modelled 92.6 22
Fold:DNA/RNA-binding 3-helical bundle
Superfamily:Homeodomain-like
Family:Cgl2762-like
49c5jaaB_
not modelled 92.4 11
PDB header:toxin
Chain: B: PDB Molecule:antitoxin iga-2;
PDBTitle: crystal structure of the higba2 toxin-antitoxin complex
50c5j9iH_
not modelled 92.0 14
PDB header:antitoxin
Chain: H: PDB Molecule:antitoxin iga-2;
PDBTitle: crystal structure of the higa2 antitoxin c-terminal domain
51c6fkgC_
not modelled 91.9 10
PDB header:toxin
Chain: C: PDB Molecule:rv1990c (mbca);
PDBTitle: crystal structure of the m.tuberculosis mbct-mbca toxin-antitoxin2 complex.
52c2ppxA_
not modelled 91.2 14
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:uncharacterized protein atu1735;
PDBTitle: crystal structure of a hth xre-family like protein from agrobacterium2 tumefaciens
53d2ppxa1
not modelled 91.2 14
Fold:lambda repressor-like DNA-binding domains
Superfamily:lambda repressor-like DNA-binding domains
Family:SinR domain-like
54c3fmyA_
not modelled 91.1 14
PDB header:dna binding protein
Chain: A: PDB Molecule:hth-type transcriptional regulator mqsa
PDBTitle: structure of the c-terminal domain of the e. coli protein2 mqsa (ygit/b3021)
55c2rn7A_
not modelled 91.1 29
PDB header:unknown function
Chain: A: PDB Molecule:is629 orfa;
PDBTitle: nmr solution structure of tnpe protein from shigella2 flexneri. northeast structural genomics target sfr125
56d1sq8a_
not modelled 90.7 20
Fold:lambda repressor-like DNA-binding domains
Superfamily:lambda repressor-like DNA-binding domains
Family:Phage repressors
57c2kpjA_
not modelled 90.6 23
PDB header:transcription regulator
Chain: A: PDB Molecule:sos-response transcriptional repressor, lexa;
PDBTitle: solution structure of protein sos-response transcriptional2 repressor, lexa from eubacterium rectale. northeast3 structural genomics consortium target err9a
58c2ebyA_
not modelled 90.2 11
PDB header:transcription
Chain: A: PDB Molecule:putative hth-type transcriptional regulator ybaq;
PDBTitle: crystal structure of a hypothetical protein from e. coli
59d1j9ia_
not modelled 90.2 19
Fold:Putative DNA-binding domain
Superfamily:Putative DNA-binding domain
Family:Terminase gpNU1 subunit domain
60d1x57a1
not modelled 89.5 6
Fold:lambda repressor-like DNA-binding domains
Superfamily:lambda repressor-like DNA-binding domains
Family:EDF1-like
61c3bd1B_
not modelled 89.0 19
PDB header:transcription
Chain: B: PDB Molecule:cro protein;
PDBTitle: structure of the cro protein from putative prophage element xfaso 1 in2 xylella fastidiosa strain ann-1
62c2fjrB_
not modelled 88.9 16
PDB header:transcription regulator
Chain: B: PDB Molecule:repressor protein ci;
PDBTitle: crystal structure of bacteriophage 186
63c1umqA_
not modelled 88.9 23
PDB header:dna-binding protein
Chain: A: PDB Molecule:photosynthetic apparatus regulatory protein;
PDBTitle: solution structure and dna binding of the effector domain2 from the global regulator prra(rega) from r. sphaeroides:3 insights into dna binding specificity
64d1umqa_
not modelled 88.9 23
Fold:DNA/RNA-binding 3-helical bundle
Superfamily:Homeodomain-like
Family:FIS-like
65c3bs3A_
not modelled 88.9 19
PDB header:dna binding protein
Chain: A: PDB Molecule:putative dna-binding protein;
PDBTitle: crystal structure of a putative dna-binding protein from bacteroides2 fragilis
66d1fipa_
not modelled 88.8 23
Fold:DNA/RNA-binding 3-helical bundle
Superfamily:Homeodomain-like
Family:FIS-like
67d2croa_
not modelled 88.7 20
Fold:lambda repressor-like DNA-binding domains
Superfamily:lambda repressor-like DNA-binding domains
Family:Phage repressors
68c3omtA_
not modelled 88.5 10
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:uncharacterized protein;
PDBTitle: putative antitoxin component, chu_2935 protein, from xre family from2 prevotella buccae.
69c3mlfC_
not modelled 88.3 6
PDB header:transcription regulator
Chain: C: PDB Molecule:transcriptional regulator;
PDBTitle: putative transcriptional regulator from staphylococcus aureus.
70c3ezfA_
not modelled 87.8 8
PDB header:biosynthetic protein
Chain: A: PDB Molecule:para;
PDBTitle: partition protein
71d2ao9a1
not modelled 87.7 20
Fold:DNA/RNA-binding 3-helical bundle
Superfamily:Homeodomain-like
Family:Nanomeric phage protein-like
72d1j5ya1
not modelled 87.6 19
Fold:DNA/RNA-binding 3-helical bundle
Superfamily:"Winged helix" DNA-binding domain
Family:Biotin repressor-like
73d1y7ya1
not modelled 87.5 13
Fold:lambda repressor-like DNA-binding domains
Superfamily:lambda repressor-like DNA-binding domains
Family:SinR domain-like
74c3op9A_
not modelled 87.5 13
PDB header:transcription regulator
Chain: A: PDB Molecule:pli0006 protein;
PDBTitle: crystal structure of transcriptional regulator from listeria innocua
75c2xcjB_
not modelled 87.4 18
PDB header:viral protein
Chain: B: PDB Molecule:c protein;
PDBTitle: crystal structure of p2 c, the immunity repressor of2 temperate e. coli phage p2
76c3f52A_
not modelled 87.3 23
PDB header:transcription activator
Chain: A: PDB Molecule:clp gene regulator (clgr);
PDBTitle: crystal structure of the clp gene regulator clgr from c. glutamicum
77c1b0nA_
not modelled 86.7 32
PDB header:transcription regulator
Chain: A: PDB Molecule:protein (sinr protein);
PDBTitle: sinr protein/sini protein complex
78c2mezA_
not modelled 86.7 19
PDB header:rna binding protein
Chain: A: PDB Molecule:multiprotein bridging factor (mbp-like);
PDBTitle: flexible anchoring of archaeal mbf1 on ribosomes suggests role as2 recruitment factor
79d1adra_
not modelled 86.6 16
Fold:lambda repressor-like DNA-binding domains
Superfamily:lambda repressor-like DNA-binding domains
Family:Phage repressors
80d2r1jl1
not modelled 86.0 16
Fold:lambda repressor-like DNA-binding domains
Superfamily:lambda repressor-like DNA-binding domains
Family:Phage repressors
81c3gn5B_
not modelled 85.7 14
PDB header:dna binding protein
Chain: B: PDB Molecule:hth-type transcriptional regulator mqsa (ygit/b3021);
PDBTitle: structure of the e. coli protein mqsa (ygit/b3021)
82c1u78A_
not modelled 85.6 9
PDB header:dna binding protein/dna
Chain: A: PDB Molecule:transposable element tc3 transposase;
PDBTitle: structure of the bipartite dna-binding domain of tc32 transposase bound to transposon dna
83d1r69a_
not modelled 85.6 18
Fold:lambda repressor-like DNA-binding domains
Superfamily:lambda repressor-like DNA-binding domains
Family:Phage repressors
84d1b0na2
not modelled 85.5 32
Fold:lambda repressor-like DNA-binding domains
Superfamily:lambda repressor-like DNA-binding domains
Family:SinR domain-like
85c3ivpD_
not modelled 85.3 6
PDB header:dna binding protein
Chain: D: PDB Molecule:putative transposon-related dna-binding protein;
PDBTitle: the structure of a possible transposon-related dna-binding protein2 from clostridium difficile 630.
86c1zvvA_
not modelled 85.3 11
PDB header:transcription/dna
Chain: A: PDB Molecule:glucose-resistance amylase regulator;
PDBTitle: crystal structure of a ccpa-crh-dna complex
87c4ybaA_
not modelled 85.3 16
PDB header:gene regulation
Chain: A: PDB Molecule:regulatory protein c;
PDBTitle: the structure of the c.kpn2i controller protein
88c2ef8A_
not modelled 85.0 9
PDB header:transcription regulator
Chain: A: PDB Molecule:putative transcription factor;
PDBTitle: crystal structure of c.ecot38is
89c1y6uA_
not modelled 84.9 8
PDB header:dna binding protein
Chain: A: PDB Molecule:excisionase from transposon tn916;
PDBTitle: the structure of the excisionase (xis) protein from2 conjugative transposon tn916 provides insights into the3 regulation of heterobivalent tyrosine recombinases
90c3t76A_
not modelled 84.9 18
PDB header:transcription regulator
Chain: A: PDB Molecule:transcriptional regulator vanug;
PDBTitle: crystal structure of transcriptional regulator vanug, form ii
91c1bdhA_
not modelled 84.9 11
PDB header:transcription/dna
Chain: A: PDB Molecule:protein (purine repressor);
PDBTitle: purine repressor mutant-hypoxanthine-palindromic operator2 complex
92c2jvlA_
not modelled 84.6 16
PDB header:transcription
Chain: A: PDB Molecule:trmbf1;
PDBTitle: nmr structure of the c-terminal domain of mbf1 of trichoderma reesei
93c4pu4C_
not modelled 84.6 20
PDB header:toxin/antitoxin/dna
Chain: C: PDB Molecule:toxin-antitoxin system antidote transcriptional repressor
PDBTitle: shewanella oneidensis mr-1 toxin antitoxin system hipa, hipb and its2 operator dna complex (space group p21)
94c4l5eA_
not modelled 84.5 28
PDB header:protein binding
Chain: A: PDB Molecule:transcriptional regulator (ntrc family);
PDBTitle: crystal structure of a. aeolicus ntrc1 dna binding domain
95c3vk0B_
not modelled 84.1 10
PDB header:dna binding protein
Chain: B: PDB Molecule:transcriptional regulator;
PDBTitle: crystal structure of hypothetical transcription factor nhtf from2 neisseria
96c4lhfA_
not modelled 83.9 23
PDB header:viral protein
Chain: A: PDB Molecule:regulatory protein cox;
PDBTitle: crystal structure of a dna binding protein from phage p2
97d1etxa_
not modelled 83.8 23
Fold:DNA/RNA-binding 3-helical bundle
Superfamily:Homeodomain-like
Family:FIS-like
98c4ghjA_
not modelled 83.1 23
PDB header:transcription
Chain: A: PDB Molecule:probable transcriptional regulator;
PDBTitle: 1.75 angstrom crystal structure of transcriptional regulator ftom2 vibrio vulnificus.
99d1y9qa1
not modelled 83.0 19
Fold:lambda repressor-like DNA-binding domains
Superfamily:lambda repressor-like DNA-binding domains
Family:Probable transcriptional regulator VC1968, N-terminal domain
100c1hlvA_
not modelled 83.0 17
PDB header:dna binding protein/dna
Chain: A: PDB Molecule:major centromere autoantigen b;
PDBTitle: crystal structure of cenp-b(1-129) complexed with the cenp-2 b box dna
101c1g2hA_
not modelled 82.6 22
PDB header:transcription
Chain: A: PDB Molecule:transcriptional regulatory protein tyrr homolog;
PDBTitle: solution structure of the dna-binding domain of the tyrr2 protein of haemophilus influenzae
102d1g2ha_
not modelled 82.6 22
Fold:DNA/RNA-binding 3-helical bundle
Superfamily:Homeodomain-like
Family:FIS-like
103c5woqA_
not modelled 82.6 13
PDB header:transcription
Chain: A: PDB Molecule:transcriptional regulator clgr;
PDBTitle: crystal structure of an xre family protein transcriptional regulator2 from mycobacterium smegmatis
104c3clcC_
not modelled 82.6 10
PDB header:transcription regulator/dna
Chain: C: PDB Molecule:regulatory protein;
PDBTitle: crystal structure of the restriction-modification controller protein2 c.esp1396i tetramer in complex with its natural 35 base-pair operator
105c3dnvB_
not modelled 82.5 10
PDB header:transcription/dna
Chain: B: PDB Molecule:hth-type transcriptional regulator hipb;
PDBTitle: mdt protein
106c3eusB_
not modelled 82.3 18
PDB header:dna binding protein
Chain: B: PDB Molecule:dna-binding protein;
PDBTitle: the crystal structure of the dna binding protein from silicibacter2 pomeroyi
107d1rioa_
not modelled 82.3 14
Fold:lambda repressor-like DNA-binding domains
Superfamily:lambda repressor-like DNA-binding domains
Family:Phage repressors
108d1rzsa_
not modelled 81.5 14
Fold:lambda repressor-like DNA-binding domains
Superfamily:lambda repressor-like DNA-binding domains
Family:Phage repressors
109d2icta1
not modelled 81.4 23
Fold:lambda repressor-like DNA-binding domains
Superfamily:lambda repressor-like DNA-binding domains
Family:SinR domain-like
110c3trbA_
not modelled 81.3 5
PDB header:dna binding protein
Chain: A: PDB Molecule:virulence-associated protein i;
PDBTitle: structure of an addiction module antidote protein of a higa (higa)2 family from coxiella burnetii
111d2b5aa1
not modelled 81.2 10
Fold:lambda repressor-like DNA-binding domains
Superfamily:lambda repressor-like DNA-binding domains
Family:SinR domain-like
112d1llib_
not modelled 81.2 10
Fold:lambda repressor-like DNA-binding domains
Superfamily:lambda repressor-like DNA-binding domains
Family:Phage repressors
113d1utxa_
not modelled 80.9 10
Fold:lambda repressor-like DNA-binding domains
Superfamily:lambda repressor-like DNA-binding domains
Family:SinR domain-like
114c1y9qA_
not modelled 80.8 18
PDB header:transcription regulator
Chain: A: PDB Molecule:transcriptional regulator, hth_3 family;
PDBTitle: crystal structure of hth_3 family transcriptional regulator2 from vibrio cholerae
115d2coba1
not modelled 80.8 14
Fold:DNA/RNA-binding 3-helical bundle
Superfamily:Homeodomain-like
Family:Psq domain
116c3b7hA_
not modelled 80.8 18
PDB header:structural protein
Chain: A: PDB Molecule:prophage lp1 protein 11;
PDBTitle: crystal structure of the prophage lp1 protein 11
117c3f6wE_
not modelled 80.7 14
PDB header:dna binding protein
Chain: E: PDB Molecule:xre-family like protein;
PDBTitle: xre-family like protein from pseudomonas syringae pv. tomato str.2 dc3000
118d2ofya1
not modelled 80.7 18
Fold:lambda repressor-like DNA-binding domains
Superfamily:lambda repressor-like DNA-binding domains
Family:SinR domain-like
119c2ao9H_
not modelled 80.6 20
PDB header:structural genomics, unknown function
Chain: H: PDB Molecule:phage protein;
PDBTitle: structural genomics, the crystal structure of a phage protein2 (phbc6a51) from bacillus cereus atcc 14579
120c3e7lD_
not modelled 80.4 26
PDB header:transcription regulator
Chain: D: PDB Molecule:transcriptional regulator (ntrc family);
PDBTitle: crystal structure of sigma54 activator ntrc4's dna binding2 domain

Binding site prediction 

Due to computational demand, binding site predictions are not run for batch jobs

If you want to predict binding sites, please manually submit your model of choice to 3DLigandSite