Phyre Home Retrieve Phyre Job Id
Emailmdejesus@rockefeller.edu
DescriptionRVBD2984_(ppk)_3339864_3342092
DateThu Aug 8 16:20:15 BST 2019
Unique Job ID1948d7f27ffba1fd
SequenceMMSNDRKVTE ... Download FASTA
Job Typenormal
Job Expiry

Summary 

Top model
Image coloured by rainbow N → C terminus
Model dimensions (Å):X:82.624 Y:73.433 Z:77.520
Model (left) based on template c1xdoB_
Top template information
PDB header:transferase
Chain: B: PDB Molecule:polyphosphate kinase;
PDBTitle: crystal structure of escherichia coli polyphosphate kinase
Confidence and coverage
Confidence:100.0% Coverage: 91%
674 residues ( 91% of your sequence) have been modelled with 100.0% confidence by the single highest scoring template.
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Sequence analysis 

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Secondary structure and disorder prediction [Show] 

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#
Template Alignment Coverage3D Model Confidence
% i.d. Template Information
1c1xdoB_



100.0 33
PDB header:transferase
Chain: B: PDB Molecule:polyphosphate kinase;
PDBTitle: crystal structure of escherichia coli polyphosphate kinase
2c2o8rA_



100.0 34
PDB header:transferase
Chain: A: PDB Molecule:polyphosphate kinase;
PDBTitle: crystal structure of polyphosphate kinase from porphyromonas2 gingivalis
3d2o8ra3



100.0 36
Fold:Phospholipase D/nuclease
Superfamily:Phospholipase D/nuclease
Family:Polyphosphate kinase C-terminal domain
4d2o8ra4



100.0 33
Fold:Phospholipase D/nuclease
Superfamily:Phospholipase D/nuclease
Family:Polyphosphate kinase C-terminal domain
5d1xdpa4



100.0 32
Fold:Phospholipase D/nuclease
Superfamily:Phospholipase D/nuclease
Family:Polyphosphate kinase C-terminal domain
6d1xdpa2



100.0 22
Fold:PHP14-like
Superfamily:PHP14-like
Family:PPK middle domain-like
7d1xdpa3



100.0 43
Fold:Phospholipase D/nuclease
Superfamily:Phospholipase D/nuclease
Family:Polyphosphate kinase C-terminal domain
8d2o8ra2



100.0 27
Fold:PHP14-like
Superfamily:PHP14-like
Family:PPK middle domain-like
9d1xdpa1



100.0 40
Fold:Spectrin repeat-like
Superfamily:PPK N-terminal domain-like
Family:PPK N-terminal domain-like
10d2o8ra1



100.0 44
Fold:Spectrin repeat-like
Superfamily:PPK N-terminal domain-like
Family:PPK N-terminal domain-like
11c3hsiC_



100.0 12
PDB header:transferase
Chain: C: PDB Molecule:phosphatidylserine synthase;
PDBTitle: crystal structure of phosphatidylserine synthase haemophilus2 influenzae rd kw20
12c1v0sA_



100.0 25
PDB header:hydrolase
Chain: A: PDB Molecule:phospholipase d;
PDBTitle: uninhibited form of phospholipase d from streptomyces sp.2 strain pmf
13c4ggkA_



99.6 13
PDB header:hydrolase
Chain: A: PDB Molecule:mitochondrial cardiolipin hydrolase;
PDBTitle: crystal structure of zucchini from mouse (mzuc / pld6 / mitopld) bound2 to tungstate
14d1byra_



99.5 16
Fold:Phospholipase D/nuclease
Superfamily:Phospholipase D/nuclease
Family:Nuclease
15c6ehiI_



99.5 10
PDB header:dna binding protein
Chain: I: PDB Molecule:nuclease nuct;
PDBTitle: nuct from helicobacter pylori
16c4gelA_



99.5 19
PDB header:hydrolase
Chain: A: PDB Molecule:mitochondrial cardiolipin hydrolase;
PDBTitle: crystal structure of zucchini
17c5lzkB_



99.4 18
PDB header:structural genomics
Chain: B: PDB Molecule:protein fam83b;
PDBTitle: structure of the domain of unknown function duf1669 from human fam83b
18d1v0wa2



99.3 27
Fold:Phospholipase D/nuclease
Superfamily:Phospholipase D/nuclease
Family:Phospholipase D
19c4urjA_



99.3 16
PDB header:unknown function
Chain: A: PDB Molecule:protein fam83a;
PDBTitle: crystal structure of human bj-tsa-9
20d1v0wa1



99.2 18
Fold:Phospholipase D/nuclease
Superfamily:Phospholipase D/nuclease
Family:Phospholipase D
21c4genA_



not modelled 99.1 20
PDB header:hydrolase
Chain: A: PDB Molecule:mitochondrial cardiolipin hydrolase;
PDBTitle: crystal structure of zucchini (monomer)
22c5bqtC_



not modelled 97.7 9
PDB header:dna binding protein
Chain: C: PDB Molecule:putative hth-type transcriptional regulator trmbl2;
PDBTitle: structure of trmbl2, an archaeal chromatin protein, shows a novel mode2 of dna binding.
23c4rctB_



not modelled 97.6 13
PDB header:hydrolase
Chain: B: PDB Molecule:restriction endonuclease r.ngovii;
PDBTitle: crystal structure of r-protein of ngoavii restriction endonuclease
24c2c1lA_



not modelled 94.1 10
PDB header:hydrolase
Chain: A: PDB Molecule:restriction endonuclease;
PDBTitle: structure of the bfii restriction endonuclease
25c3qphA_



not modelled 91.5 14
PDB header:transcription
Chain: A: PDB Molecule:trmb, a global transcription regulator;
PDBTitle: the three-dimensional structure of trmb, a global transcriptional2 regulator of the hyperthermophilic archaeon pyrococcus furiosus in3 complex with sucrose
26c3ecsD_



not modelled 90.9 29
PDB header:translation
Chain: D: PDB Molecule:translation initiation factor eif-2b subunit alpha;
PDBTitle: crystal structure of human eif2b alpha
27d1vb5a_



not modelled 90.3 20
Fold:NagB/RpiA/CoA transferase-like
Superfamily:NagB/RpiA/CoA transferase-like
Family:IF2B-like
28c6i7tB_



not modelled 89.6 21
PDB header:translation
Chain: B: PDB Molecule:translation initiation factor eif-2b subunit alpha;
PDBTitle: eif2b:eif2 complex
29c5b04B_



not modelled 88.1 15
PDB header:translation
Chain: B: PDB Molecule:translation initiation factor eif-2b subunit alpha;
PDBTitle: crystal structure of the eukaryotic translation initiation factor 2b2 from schizosaccharomyces pombe
30d1zj8a2



not modelled 87.8 22
Fold:Ferredoxin-like
Superfamily:Nitrite/Sulfite reductase N-terminal domain-like
Family:Duplicated SiR/NiR-like domains 1 and 3
31c4ldrA_



not modelled 87.1 14
PDB header:isomerase, cell invasion
Chain: A: PDB Molecule:methylthioribose-1-phosphate isomerase;
PDBTitle: structure of the s283y mutant of mrdi
32c2yv2A_



not modelled 86.8 20
PDB header:ligase
Chain: A: PDB Molecule:succinyl-coa synthetase alpha chain;
PDBTitle: crystal structure of succinyl-coa synthetase alpha chain from2 aeropyrum pernix k1
33d1oy0a_



not modelled 86.0 19
Fold:TIM beta/alpha-barrel
Superfamily:Phosphoenolpyruvate/pyruvate domain
Family:Ketopantoate hydroxymethyltransferase PanB
34c3r2jC_



not modelled 85.2 31
PDB header:hydrolase
Chain: C: PDB Molecule:alpha/beta-hydrolase-like protein;
PDBTitle: crystal structure of pnc1 from l. infantum in complex with nicotinate
35c5dboA_



not modelled 84.8 23
PDB header:translation
Chain: A: PDB Molecule:translation initiation factor eif-2b-like protein;
PDBTitle: crystal structure of the tetrameric eif2b-beta2-delta2 complex from c.2 thermophilum
36d1eucb1



not modelled 83.5 20
Fold:Flavodoxin-like
Superfamily:Succinyl-CoA synthetase domains
Family:Succinyl-CoA synthetase domains
37c2fpgA_



not modelled 82.7 21
PDB header:ligase
Chain: A: PDB Molecule:succinyl-coa ligase [gdp-forming] alpha-chain,
PDBTitle: crystal structure of pig gtp-specific succinyl-coa synthetase in2 complex with gdp
38d1jy1a1



not modelled 82.0 11
Fold:Phospholipase D/nuclease
Superfamily:Phospholipase D/nuclease
Family:Tyrosyl-DNA phosphodiesterase TDP1
39c3a11D_



not modelled 81.7 21
PDB header:isomerase
Chain: D: PDB Molecule:translation initiation factor eif-2b, delta subunit;
PDBTitle: crystal structure of ribose-1,5-bisphosphate isomerase from2 thermococcus kodakaraensis kod1
40c3gbcA_



not modelled 81.0 18
PDB header:hydrolase
Chain: A: PDB Molecule:pyrazinamidase/nicotinamidas pnca;
PDBTitle: determination of the crystal structure of the pyrazinamidase from2 m.tuberculosis : a structure-function analysis for prediction3 resistance to pyrazinamide
41d1t9ka_



not modelled 80.1 20
Fold:NagB/RpiA/CoA transferase-like
Superfamily:NagB/RpiA/CoA transferase-like
Family:IF2B-like
42d1qzqa1



not modelled 79.7 11
Fold:Phospholipase D/nuclease
Superfamily:Phospholipase D/nuclease
Family:Tyrosyl-DNA phosphodiesterase TDP1
43c6melA_



not modelled 79.6 19
PDB header:ligase
Chain: A: PDB Molecule:succinate--coa ligase subunit alpha;
PDBTitle: succinyl-coa synthase from campylobacter jejuni
44c5b04C_



not modelled 79.4 25
PDB header:translation
Chain: C: PDB Molecule:probable translation initiation factor eif-2b subunit beta;
PDBTitle: crystal structure of the eukaryotic translation initiation factor 2b2 from schizosaccharomyces pombe
45d2nu7b1



not modelled 79.4 21
Fold:Flavodoxin-like
Superfamily:Succinyl-CoA synthetase domains
Family:Succinyl-CoA synthetase domains
46d1t5oa_



not modelled 79.1 18
Fold:NagB/RpiA/CoA transferase-like
Superfamily:NagB/RpiA/CoA transferase-like
Family:IF2B-like
47c4zemB_



not modelled 79.0 19
PDB header:translation
Chain: B: PDB Molecule:translation initiation factor eif2b-like protein,
PDBTitle: crystal structure of eif2b beta from chaetomium thermophilum
48c6a34B_



not modelled 78.8 12
PDB header:isomerase
Chain: B: PDB Molecule:putative methylthioribose-1-phosphate isomerase;
PDBTitle: crystal structure of 5-methylthioribose 1-phosphate isomerase from2 pyrococcus horikoshii ot3 - form i
49c4zeoH_



not modelled 78.1 23
PDB header:translation
Chain: H: PDB Molecule:translation initiation factor eif-2b-like protein;
PDBTitle: crystal structure of eif2b delta from chaetomium thermophilum
50c5b04G_



not modelled 78.0 23
PDB header:translation
Chain: G: PDB Molecule:probable translation initiation factor eif-2b subunit
PDBTitle: crystal structure of the eukaryotic translation initiation factor 2b2 from schizosaccharomyces pombe
51c1zj8B_



not modelled 77.5 24
PDB header:oxidoreductase
Chain: B: PDB Molecule:probable ferredoxin-dependent nitrite reductase nira;
PDBTitle: structure of mycobacterium tuberculosis nira protein
52d1oi7a2



not modelled 76.8 20
Fold:Flavodoxin-like
Superfamily:Succinyl-CoA synthetase domains
Family:Succinyl-CoA synthetase domains
53c6i3mD_



not modelled 75.7 27
PDB header:translation
Chain: D: PDB Molecule:translation initiation factor eif-2b subunit delta;
PDBTitle: eif2b:eif2 complex, phosphorylated on eif2 alpha serine 52.
54c6ezoD_



not modelled 74.9 24
PDB header:membrane protein
Chain: D: PDB Molecule:translation initiation factor eif-2b subunit beta;
PDBTitle: eukaryotic initiation factor eif2b in complex with isrib
55d2akja2



not modelled 74.1 29
Fold:Ferredoxin-like
Superfamily:Nitrite/Sulfite reductase N-terminal domain-like
Family:Duplicated SiR/NiR-like domains 1 and 3
56c2b34C_



not modelled 73.0 18
PDB header:hydrolase
Chain: C: PDB Molecule:mar1 ribonuclease;
PDBTitle: structure of mar1 ribonuclease from caenorhabditis elegans
57c2yvkA_



not modelled 72.2 18
PDB header:isomerase
Chain: A: PDB Molecule:methylthioribose-1-phosphate isomerase;
PDBTitle: crystal structure of 5-methylthioribose 1-phosphate2 isomerase product complex from bacillus subtilis
58d1v59a2



not modelled 72.0 17
Fold:FAD/NAD(P)-binding domain
Superfamily:FAD/NAD(P)-binding domain
Family:FAD/NAD-linked reductases, N-terminal and central domains
59c6qg0G_



not modelled 71.7 26
PDB header:translation
Chain: G: PDB Molecule:translation initiation factor eif-2b subunit delta;
PDBTitle: structure of eif2b-eif2 (phosphorylated at ser51) complex (model 1)
60c3b0nA_



not modelled 70.1 27
PDB header:oxidoreductase
Chain: A: PDB Molecule:nitrite reductase;
PDBTitle: q448k mutant of assimilatory nitrite reductase (nii3) from tobbaco2 leaf
61d2a0ua1



not modelled 69.7 12
Fold:NagB/RpiA/CoA transferase-like
Superfamily:NagB/RpiA/CoA transferase-like
Family:IF2B-like
62c2h0rD_



not modelled 68.1 18
PDB header:hydrolase
Chain: D: PDB Molecule:nicotinamidase;
PDBTitle: structure of the yeast nicotinamidase pnc1p
63c4davA_



not modelled 68.0 23
PDB header:hydrolase/dna
Chain: A: PDB Molecule:sugar fermentation stimulation protein homolog;
PDBTitle: the structure of pyrococcus furiosus sfsa in complex with dna
64c5n0sA_



not modelled 67.5 9
PDB header:transferase
Chain: A: PDB Molecule:peptide n-methyltransferase;
PDBTitle: crystal structure of opha-deltac6 mutant y98a in complex with sam
65c1nopB_



not modelled 67.4 11
PDB header:hydrolase/dna
Chain: B: PDB Molecule:tyrosyl-dna phosphodiesterase 1;
PDBTitle: crystal structure of human tyrosyl-dna phosphodiesterase2 (tdp1) in complex with vanadate, dna and a human3 topoisomerase i-derived peptide
66d1s4da_



not modelled 66.9 19
Fold:Tetrapyrrole methylase
Superfamily:Tetrapyrrole methylase
Family:Tetrapyrrole methylase
67c5h92A_



not modelled 66.7 14
PDB header:oxidoreductase/electron transport
Chain: A: PDB Molecule:sulfite reductase [ferredoxin], chloroplastic;
PDBTitle: crystal structure of the complex between maize sulfite reductase and2 ferredoxin in the form-3 crystal
68c2nu8D_



not modelled 66.5 22
PDB header:ligase
Chain: D: PDB Molecule:succinyl-coa ligase [adp-forming] subunit alpha;
PDBTitle: c123at mutant of e. coli succinyl-coa synthetase
69c3mwdB_



not modelled 66.4 19
PDB header:transferase
Chain: B: PDB Molecule:atp-citrate synthase;
PDBTitle: truncated human atp-citrate lyase with citrate bound
70d2csua2



not modelled 66.1 19
Fold:Flavodoxin-like
Superfamily:Succinyl-CoA synthetase domains
Family:Succinyl-CoA synthetase domains
71c6g4qB_



not modelled 65.9 18
PDB header:ligase
Chain: B: PDB Molecule:succinate--coa ligase [adp-forming] subunit beta,
PDBTitle: structure of human adp-forming succinyl-coa ligase complex suclg1-2 sucla2
72c4dapA_



not modelled 65.9 23
PDB header:dna binding protein
Chain: A: PDB Molecule:sugar fermentation stimulation protein a;
PDBTitle: the structure of escherichia coli sfsa
73c2yboA_



not modelled 65.8 20
PDB header:transferase
Chain: A: PDB Molecule:methyltransferase;
PDBTitle: the x-ray structure of the sam-dependent uroporphyrinogen2 iii methyltransferase nire from pseudomonas aeruginosa in3 complex with sah
74d1o66a_



not modelled 63.1 16
Fold:TIM beta/alpha-barrel
Superfamily:Phosphoenolpyruvate/pyruvate domain
Family:Ketopantoate hydroxymethyltransferase PanB
75c4yt2A_



not modelled 62.8 42
PDB header:metal binding protein
Chain: A: PDB Molecule:h(2)-forming methylenetetrahydromethanopterin
PDBTitle: hmd ii from methanocaldococcus jannaschii
76c3d3kD_



not modelled 62.5 15
PDB header:protein binding
Chain: D: PDB Molecule:enhancer of mrna-decapping protein 3;
PDBTitle: crystal structure of human edc3p
77c4v34A_



not modelled 62.4 16
PDB header:transferase
Chain: A: PDB Molecule:alanyl-trna-dependent l-alanyl- phophatidylglycerol
PDBTitle: the structure of a-pgs from pseudomonas aeruginosa (semet derivative)
78d1jy1a2



not modelled 61.5 18
Fold:Phospholipase D/nuclease
Superfamily:Phospholipase D/nuclease
Family:Tyrosyl-DNA phosphodiesterase TDP1
79c6huxA_



not modelled 60.6 42
PDB header:oxidoreductase
Chain: A: PDB Molecule:h(2)-forming methylenetetrahydromethanopterin
PDBTitle: hmdii from methanocaldococcus jannaschii reconstitued with fe-2 guanylylpyridinol (fegp) cofactor and co-crystallized with methenyl-3 tetrahydromethanopterin at 2.5 a resolution
80c4xp7A_



not modelled 60.2 10
PDB header:oxidoreductase
Chain: A: PDB Molecule:trna-dihydrouridine(20) synthase [nad(p)+]-like;
PDBTitle: crystal structure of human trna dihydrouridine synthase 2
81c1yzvA_



not modelled 59.5 12
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:hypothetical protein;
PDBTitle: hypothetical protein from trypanosoma cruzi
82c1eucB_



not modelled 59.1 20
PDB header:ligase
Chain: B: PDB Molecule:succinyl-coa synthetase, beta chain;
PDBTitle: crystal structure of dephosphorylated pig heart, gtp-2 specific succinyl-coa synthetase
83d1vhna_



not modelled 58.1 14
Fold:TIM beta/alpha-barrel
Superfamily:FMN-linked oxidoreductases
Family:FMN-linked oxidoreductases
84c1nvmG_



not modelled 57.6 10
PDB header:lyase/oxidoreductase
Chain: G: PDB Molecule:4-hydroxy-2-oxovalerate aldolase;
PDBTitle: crystal structure of a bifunctional aldolase-dehydrogenase :2 sequestering a reactive and volatile intermediate
85d1ebda2



not modelled 55.4 26
Fold:FAD/NAD(P)-binding domain
Superfamily:FAD/NAD(P)-binding domain
Family:FAD/NAD-linked reductases, N-terminal and central domains
86d1dxla2



not modelled 53.6 20
Fold:FAD/NAD(P)-binding domain
Superfamily:FAD/NAD(P)-binding domain
Family:FAD/NAD-linked reductases, N-terminal and central domains
87c4lrtC_



not modelled 53.3 18
PDB header:lyase/oxidoreductase
Chain: C: PDB Molecule:4-hydroxy-2-oxovalerate aldolase;
PDBTitle: crystal and solution structures of the bifunctional enzyme2 (aldolase/aldehyde dehydrogenase) from thermomonospora curvata,3 reveal a cofactor-binding domain motion during nad+ and coa4 accommodation whithin the shared cofactor-binding site
88d1euca2



not modelled 53.2 21
Fold:Flavodoxin-like
Superfamily:Succinyl-CoA synthetase domains
Family:Succinyl-CoA synthetase domains
89d1q32a2



not modelled 52.5 20
Fold:Phospholipase D/nuclease
Superfamily:Phospholipase D/nuclease
Family:Tyrosyl-DNA phosphodiesterase TDP1
90c6hxiD_



not modelled 51.7 20
PDB header:lyase
Chain: D: PDB Molecule:succinyl-coa ligase (adp-forming) subunit alpha;
PDBTitle: structure of atp citrate lyase from methanothrix soehngenii in complex2 with citrate and coenzyme a
91d1jpma1



not modelled 51.7 14
Fold:TIM beta/alpha-barrel
Superfamily:Enolase C-terminal domain-like
Family:D-glucarate dehydratase-like
92c2akjA_



not modelled 51.5 29
PDB header:oxidoreductase
Chain: A: PDB Molecule:ferredoxin--nitrite reductase, chloroplast;
PDBTitle: structure of spinach nitrite reductase
93d1j2ra_



not modelled 50.9 12
Fold:Isochorismatase-like hydrolases
Superfamily:Isochorismatase-like hydrolases
Family:Isochorismatase-like hydrolases
94d1x9ga_



not modelled 49.8 12
Fold:Isochorismatase-like hydrolases
Superfamily:Isochorismatase-like hydrolases
Family:Isochorismatase-like hydrolases
95d2nu7a1



not modelled 49.6 18
Fold:NAD(P)-binding Rossmann-fold domains
Superfamily:NAD(P)-binding Rossmann-fold domains
Family:CoA-binding domain
96c3kwpA_



not modelled 49.3 14
PDB header:transferase
Chain: A: PDB Molecule:predicted methyltransferase;
PDBTitle: crystal structure of putative methyltransferase from lactobacillus2 brevis
97d2nu7a2



not modelled 49.2 24
Fold:Flavodoxin-like
Superfamily:Succinyl-CoA synthetase domains
Family:Succinyl-CoA synthetase domains
98d1im5a_



not modelled 48.6 11
Fold:Isochorismatase-like hydrolases
Superfamily:Isochorismatase-like hydrolases
Family:Isochorismatase-like hydrolases
99c1oi7A_



not modelled 47.8 19
PDB header:synthetase
Chain: A: PDB Molecule:succinyl-coa synthetase alpha chain;
PDBTitle: the crystal structure of succinyl-coa synthetase alpha2 subunit from thermus thermophilus
100c2rqmA_



not modelled 47.3 17
PDB header:chaperone
Chain: A: PDB Molecule:mesoderm development candidate 2;
PDBTitle: nmr solution structure of mesoderm development (mesd) - open2 conformation
101c2wtaA_



not modelled 46.6 14
PDB header:hydrolase
Chain: A: PDB Molecule:nicotinamidase;
PDBTitle: acinetobacter baumanii nicotinamidase pyrazinamidease
102c3tb4A_



not modelled 46.6 14
PDB header:hydrolase
Chain: A: PDB Molecule:vibriobactin-specific isochorismatase;
PDBTitle: crystal structure of the isc domain of vibb
103c3m4xA_



not modelled 45.2 13
PDB header:transferase
Chain: A: PDB Molecule:nol1/nop2/sun family protein;
PDBTitle: structure of a ribosomal methyltransferase
104c5zn8B_



not modelled 45.1 21
PDB header:metal binding protein
Chain: B: PDB Molecule:isochorismatase;
PDBTitle: crystal structure of nicotinamidase pnca from bacillus subtilis
105c1yd2A_



not modelled 44.9 27
PDB header:dna binding protein
Chain: A: PDB Molecule:uvrabc system protein c;
PDBTitle: crystal structure of the giy-yig n-terminal endonuclease domain of2 uvrc from thermotoga maritima: point mutant y19f bound to the3 catalytic divalent cation
106c2csuB_



not modelled 44.6 21
PDB header:structural genomics, unknown function
Chain: B: PDB Molecule:457aa long hypothetical protein;
PDBTitle: crystal structure of ph0766 from pyrococcus horikoshii ot3
107d1aoga2



not modelled 44.2 17
Fold:FAD/NAD(P)-binding domain
Superfamily:FAD/NAD(P)-binding domain
Family:FAD/NAD-linked reductases, N-terminal and central domains
108d3c7bb2



not modelled 44.2 25
Fold:Ferredoxin-like
Superfamily:Nitrite/Sulfite reductase N-terminal domain-like
Family:DsrA/DsrB N-terminal-domain-like
109c2hxtA_



not modelled 43.8 22
PDB header:unknown function
Chain: A: PDB Molecule:l-fuconate dehydratase;
PDBTitle: crystal structure of l-fuconate dehydratase from xanthomonas2 campestris liganded with mg++ and d-erythronohydroxamate
110d1q32a1



not modelled 41.9 12
Fold:Phospholipase D/nuclease
Superfamily:Phospholipase D/nuclease
Family:Tyrosyl-DNA phosphodiesterase TDP1
111c2v4jA_



not modelled 41.7 22
PDB header:oxidoreductase
Chain: A: PDB Molecule:sulfite reductase, dissimilatory-type subunit
PDBTitle: the crystal structure of desulfovibrio vulgaris2 dissimilatory sulfite reductase bound to dsrc provides3 novel insights into the mechanism of sulfate respiration
112d1nu5a1



not modelled 40.9 23
Fold:TIM beta/alpha-barrel
Superfamily:Enolase C-terminal domain-like
Family:D-glucarate dehydratase-like
113c1nu5A_



not modelled 40.9 26
PDB header:isomerase
Chain: A: PDB Molecule:chloromuconate cycloisomerase;
PDBTitle: crystal structure of pseudomonas sp. p51 chloromuconate lactonizing2 enzyme
114c4zhjA_



not modelled 40.4 19
PDB header:metal binding protein
Chain: A: PDB Molecule:mg-chelatase subunit chlh;
PDBTitle: crystal structure of the catalytic subunit of magnesium chelatase
115c2jlaD_



not modelled 39.8 43
PDB header:transferase
Chain: D: PDB Molecule:2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene
PDBTitle: crystal structure of e.coli mend, 2-succinyl-5-enolpyruvyl-2 6-hydroxy-3-cyclohexadiene-1-carboxylate synthase - semet3 protein
116c1pjtB_



not modelled 39.7 18
PDB header:transferase/oxidoreductase/lyase
Chain: B: PDB Molecule:siroheme synthase;
PDBTitle: the structure of the ser128ala point-mutant variant of cysg, the2 multifunctional methyltransferase/dehydrogenase/ferrochelatase for3 siroheme synthesis
117c1yd6A_



not modelled 39.7 23
PDB header:dna binding protein
Chain: A: PDB Molecule:uvrc;
PDBTitle: crystal structure of the giy-yig n-terminal endonuclease2 domain of uvrc from bacillus caldotenax
118c2zzxD_



not modelled 39.5 8
PDB header:transport protein
Chain: D: PDB Molecule:abc transporter, solute-binding protein;
PDBTitle: crystal structure of a periplasmic substrate binding protein in2 complex with lactate
119c3o93A_



not modelled 39.0 12
PDB header:hydrolase
Chain: A: PDB Molecule:nicotinamidase;
PDBTitle: high resolution crystal structures of streptococcus pneumoniae2 nicotinamidase with trapped intermediates provide insights into3 catalytic mechanism and inhibition by aldehydes
120d1lvla2



not modelled 38.3 24
Fold:FAD/NAD(P)-binding domain
Superfamily:FAD/NAD(P)-binding domain
Family:FAD/NAD-linked reductases, N-terminal and central domains

Binding site prediction 

Due to computational demand, binding site predictions are not run for batch jobs

If you want to predict binding sites, please manually submit your model of choice to 3DLigandSite