Phyre Home Retrieve Phyre Job Id
Emailmdejesus@rockefeller.edu
DescriptionRVBD2987c_(leuD)_3344043_3344639
DateThu Aug 8 16:20:15 BST 2019
Unique Job ID56d8134cbb6d5053
SequenceMEAFHTHSGI ... Download FASTA
Job Typenormal
Job Expiry

Summary 

Top model
Image coloured by rainbow N → C terminus
Model dimensions (Å):X:48.766 Y:42.697 Z:36.172
Model (left) based on template c3h5jA_
Top template information
PDB header:lyase
Chain: A: PDB Molecule:3-isopropylmalate dehydratase small subunit;
PDBTitle: leud_1-168 small subunit of isopropylmalate isomerase (rv2987c) from2 mycobacterium tuberculosis
Confidence and coverage
Confidence:100.0% Coverage: 84%
167 residues ( 84% of your sequence) have been modelled with 100.0% confidence by the single highest scoring template.
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Sequence analysis 

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#
Template Alignment Coverage3D Model Confidence
% i.d. Template Information
1c3h5jA_



100.0 100
PDB header:lyase
Chain: A: PDB Molecule:3-isopropylmalate dehydratase small subunit;
PDBTitle: leud_1-168 small subunit of isopropylmalate isomerase (rv2987c) from2 mycobacterium tuberculosis
2c3q3wB_



100.0 43
PDB header:transferase
Chain: B: PDB Molecule:3-isopropylmalate dehydratase small subunit;
PDBTitle: isopropylmalate isomerase small subunit from campylobacter jejuni.
3c2hcuA_



100.0 42
PDB header:lyase
Chain: A: PDB Molecule:3-isopropylmalate dehydratase small subunit;
PDBTitle: crystal structure of smu.1381 (or leud) from streptococcus mutans
4d1v7la_



100.0 31
Fold:The "swivelling" beta/beta/alpha domain
Superfamily:LeuD/IlvD-like
Family:LeuD-like
5c3vbaE_



100.0 33
PDB header:lyase
Chain: E: PDB Molecule:isopropylmalate/citramalate isomerase small subunit;
PDBTitle: crystal structure of methanogen 3-isopropylmalate isomerase small2 subunit
6c2pkpA_



100.0 32
PDB header:lyase
Chain: A: PDB Molecule:homoaconitase small subunit;
PDBTitle: crystal structure of 3-isopropylmalate dehydratase (leud)2 from methhanocaldococcus jannaschii dsm2661 (mj1271)
7d1acoa1



100.0 21
Fold:The "swivelling" beta/beta/alpha domain
Superfamily:LeuD/IlvD-like
Family:LeuD-like
8d2b3ya1



100.0 24
Fold:The "swivelling" beta/beta/alpha domain
Superfamily:LeuD/IlvD-like
Family:LeuD-like
9d1l5ja2



100.0 23
Fold:The "swivelling" beta/beta/alpha domain
Superfamily:LeuD/IlvD-like
Family:LeuD-like
10c2b3yB_



100.0 22
PDB header:lyase
Chain: B: PDB Molecule:iron-responsive element binding protein 1;
PDBTitle: structure of a monoclinic crystal form of human cytosolic aconitase2 (irp1)
11c5acnA_



100.0 19
PDB header:lyase(carbon-oxygen)
Chain: A: PDB Molecule:aconitase;
PDBTitle: structure of activated aconitase. formation of the (4fe-4s) cluster in2 the crystal
12c1l5jB_



99.6 20
PDB header:lyase
Chain: B: PDB Molecule:aconitate hydratase 2;
PDBTitle: crystal structure of e. coli aconitase b.
13c1t6zB_



63.0 24
PDB header:transferase
Chain: B: PDB Molecule:riboflavin kinase/fmn adenylyltransferase;
PDBTitle: crystal structure of riboflavin bound tm379
14d1eo1a_



61.3 20
Fold:Ribonuclease H-like motif
Superfamily:Nitrogenase accessory factor-like
Family:MTH1175-like
15c2yx6C_



59.5 9
PDB header:structural genomics, unknown function
Chain: C: PDB Molecule:hypothetical protein ph0822;
PDBTitle: crystal structure of ph0822
16d1o13a_



54.0 14
Fold:Ribonuclease H-like motif
Superfamily:Nitrogenase accessory factor-like
Family:MTH1175-like
17c2qtdA_



51.9 12
PDB header:oxidoreductase
Chain: A: PDB Molecule:uncharacterized protein mj0327;
PDBTitle: crystal structure of a putative dinitrogenase (mj0327) from2 methanocaldococcus jannaschii dsm at 1.70 a resolution
18c3op1A_



51.1 25
PDB header:transferase
Chain: A: PDB Molecule:macrolide-efflux protein;
PDBTitle: crystal structure of macrolide-efflux protein sp_1110 from2 streptococcus pneumoniae
19d1rdua_



50.7 16
Fold:Ribonuclease H-like motif
Superfamily:Nitrogenase accessory factor-like
Family:MTH1175-like
20d1t3va_



48.3 13
Fold:Ribonuclease H-like motif
Superfamily:Nitrogenase accessory factor-like
Family:MTH1175-like
21d1jx4a1



not modelled 41.6 23
Fold:Lesion bypass DNA polymerase (Y-family), little finger domain
Superfamily:Lesion bypass DNA polymerase (Y-family), little finger domain
Family:Lesion bypass DNA polymerase (Y-family), little finger domain
22c2wfbA_



not modelled 39.7 13
PDB header:biosynthetic protein
Chain: A: PDB Molecule:putative uncharacterized protein orp;
PDBTitle: high resolution structure of the apo form of the orange2 protein (orp) from desulfovibrio gigas
23d1nyta1



not modelled 38.5 29
Fold:NAD(P)-binding Rossmann-fold domains
Superfamily:NAD(P)-binding Rossmann-fold domains
Family:Aminoacid dehydrogenase-like, C-terminal domain
24c2dlnA_



not modelled 32.2 30
PDB header:ligase(peptidoglycan synthesis)
Chain: A: PDB Molecule:d-alanine--d-alanine ligase;
PDBTitle: vancomycin resistance: structure of d-alanine:d-alanine ligase at 2.32 angstroms resolution
25c6et5u_



not modelled 30.7 27
PDB header:photosynthesis
Chain: U: PDB Molecule:light-harvesting protein b-1015 gamma chain;
PDBTitle: reaction centre light harvesting complex 1 from blc. virids
26c3c3jA_



not modelled 30.4 18
PDB header:isomerase
Chain: A: PDB Molecule:putative tagatose-6-phosphate ketose/aldose isomerase;
PDBTitle: crystal structure of tagatose-6-phosphate ketose/aldose isomerase from2 escherichia coli
27c3vh3A_



not modelled 30.2 33
PDB header:metal binding protein/protein transport
Chain: A: PDB Molecule:ubiquitin-like modifier-activating enzyme atg7;
PDBTitle: crystal structure of atg7ctd-atg8 complex
28c2re2A_



not modelled 28.5 19
PDB header:oxidoreductase
Chain: A: PDB Molecule:uncharacterized protein ta1041;
PDBTitle: crystal structure of a putative iron-molybdenum cofactor (femo-co)2 dinitrogenase (ta1041m) from thermoplasma acidophilum dsm 1728 at3 1.30 a resolution
29d1xjha_



not modelled 28.1 32
Fold:HSP33 redox switch-like
Superfamily:HSP33 redox switch-like
Family:HSP33 redox switch-like
30c1vkzA_



not modelled 27.7 38
PDB header:ligase
Chain: A: PDB Molecule:phosphoribosylamine--glycine ligase;
PDBTitle: crystal structure of phosphoribosylamine--glycine ligase (tm1250) from2 thermotoga maritima at 2.30 a resolution
31d1a9xa3



not modelled 27.4 41
Fold:PreATP-grasp domain
Superfamily:PreATP-grasp domain
Family:BC N-terminal domain-like
32c4wwsE_



not modelled 26.7 23
PDB header:oxidoreductase
Chain: E: PDB Molecule:putative heme-dependent peroxidase lmo2113;
PDBTitle: structure of chlorite dismutase-like protein from listeria2 monocytogenes
33c5xf2B_



not modelled 26.7 21
PDB header:transferase
Chain: B: PDB Molecule:putative cytidylyltransferase;
PDBTitle: crystal structure of semet-hldc from burkholderia pseudomallei
34d2gp4a1



not modelled 26.5 14
Fold:The "swivelling" beta/beta/alpha domain
Superfamily:LeuD/IlvD-like
Family:IlvD/EDD C-terminal domain-like
35c3uvzB_



not modelled 26.3 19
PDB header:lyase
Chain: B: PDB Molecule:phosphoribosylaminoimidazole carboxylase, atpase subunit;
PDBTitle: crystal structure of phosphoribosylaminoimidazole carboxylase, atpase2 subunit from burkholderia ambifaria
36c1yrlD_



not modelled 25.7 17
PDB header:oxidoreductase
Chain: D: PDB Molecule:ketol-acid reductoisomerase;
PDBTitle: escherichia coli ketol-acid reductoisomerase
37c2amlB_



not modelled 25.6 13
PDB header:transferase
Chain: B: PDB Molecule:sis domain protein;
PDBTitle: crystal structure of lmo0035 protein (46906266) from listeria2 monocytogenes 4b f2365 at 1.50 a resolution
38c3ax6C_



not modelled 25.5 12
PDB header:ligase
Chain: C: PDB Molecule:phosphoribosylaminoimidazole carboxylase, atpase subunit;
PDBTitle: crystal structure of n5-carboxyaminoimidazole ribonucleotide2 synthetase from thermotoga maritima
39c3bgdB_



not modelled 25.1 17
PDB header:transferase
Chain: B: PDB Molecule:thiopurine s-methyltransferase;
PDBTitle: thiopurine s-methyltransferase
40c4dtfA_



not modelled 24.5 32
PDB header:toxin
Chain: A: PDB Molecule:vgrg protein;
PDBTitle: structure of a vgrg vibrio cholerae toxin acd domain in complex with2 amp-pnp and mg++
41c2ip4A_



not modelled 24.5 41
PDB header:ligase
Chain: A: PDB Molecule:phosphoribosylamine--glycine ligase;
PDBTitle: crystal structure of glycinamide ribonucleotide synthetase from2 thermus thermophilus hb8
42d1fe0a_



not modelled 23.8 9
Fold:Ferredoxin-like
Superfamily:HMA, heavy metal-associated domain
Family:HMA, heavy metal-associated domain
43c4uc0A_



not modelled 23.7 19
PDB header:transferase
Chain: A: PDB Molecule:purine nucleoside phosphorylase;
PDBTitle: crystal structure of a purine nucleoside phosphorylase (psi-nysgrc-2 029736) from agrobacterium vitis
44c3fj1A_



not modelled 23.2 18
PDB header:isomerase
Chain: A: PDB Molecule:putative phosphosugar isomerase;
PDBTitle: crystal structure of putative phosphosugar isomerase (yp_167080.1)2 from silicibacter pomeroyi dss-3 at 1.75 a resolution
45c5d6sB_



not modelled 23.0 33
PDB header:oxidoreductase
Chain: B: PDB Molecule:epoxyqueuosine reductase;
PDBTitle: structure of epoxyqueuosine reductase from streptococcus thermophilus.
46d1vkza2



not modelled 22.4 40
Fold:PreATP-grasp domain
Superfamily:PreATP-grasp domain
Family:BC N-terminal domain-like
47c5d0bB_



not modelled 21.8 42
PDB header:oxidoreductase/rna
Chain: B: PDB Molecule:epoxyqueuosine reductase;
PDBTitle: crystal structure of epoxyqueuosine reductase with a trna-tyr2 epoxyqueuosine-modified trna stem loop
48c3la8A_



not modelled 21.6 15
PDB header:transferase
Chain: A: PDB Molecule:putative purine nucleoside phosphorylase;
PDBTitle: the crystal structure of smu.1229 from streptococcus mutans ua159
49c5ym0A_



not modelled 21.5 21
PDB header:lyase
Chain: A: PDB Molecule:dihydroxy-acid dehydratase, chloroplastic;
PDBTitle: the crystal structure of dhad
50d1a9xa4



not modelled 21.1 26
Fold:PreATP-grasp domain
Superfamily:PreATP-grasp domain
Family:BC N-terminal domain-like
51c5xeiA_



not modelled 20.9 39
PDB header:dna binding protein, cell cycle
Chain: A: PDB Molecule:chromosome partition protein smc;
PDBTitle: crystal structure of the smc head domain with a coiled coil and joint2 derived from pyrococcus yayanosii
52c3t07D_



not modelled 20.5 16
PDB header:transferase/transferase inhibitor
Chain: D: PDB Molecule:pyruvate kinase;
PDBTitle: crystal structure of s. aureus pyruvate kinase in complex with a2 naturally occurring bis-indole alkaloid
53c2zj3A_



not modelled 20.4 9
PDB header:transferase
Chain: A: PDB Molecule:glucosamine--fructose-6-phosphate
PDBTitle: isomerase domain of human glucose:fructose-6-phosphate2 amidotransferase
54d1okkd2



not modelled 20.4 33
Fold:P-loop containing nucleoside triphosphate hydrolases
Superfamily:P-loop containing nucleoside triphosphate hydrolases
Family:Nitrogenase iron protein-like
55d1t0tv_



not modelled 19.9 23
Fold:Ferredoxin-like
Superfamily:Dimeric alpha+beta barrel
Family:Chlorite dismutase-like
56c3hrpA_



not modelled 18.6 38
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:uncharacterized protein;
PDBTitle: crystal structure of structural genomics protein of unknown function2 (np_812590.1) from bacteroides thetaiotaomicron vpi-5482 at 1.70 a3 resolution
57d1j9ba_



not modelled 18.3 16
Fold:Thioredoxin fold
Superfamily:Thioredoxin-like
Family:ArsC-like
58c3idwA_



not modelled 18.3 14
PDB header:endocytosis
Chain: A: PDB Molecule:actin cytoskeleton-regulatory complex protein sla1;
PDBTitle: crystal structure of sla1 homology domain 2
59c4uy5A_



not modelled 18.2 20
PDB header:transferase
Chain: A: PDB Molecule:histidine-specific methyltransferase egtd;
PDBTitle: crystal structure of histidine-specific methyltransferase egtd from2 mycobacterium smegmatis
60c4l5cE_



not modelled 18.0 38
PDB header:transferase
Chain: E: PDB Molecule:s-methyl-5'-thioadenosine phosphorylase;
PDBTitle: methylthioadenosine phosphorylase from schistosoma mansoni in complex2 with adenine in space group p212121
61c5j84A_



not modelled 17.9 39
PDB header:lyase
Chain: A: PDB Molecule:dihydroxy-acid dehydratase;
PDBTitle: crystal structure of l-arabinonate dehydratase in holo-form
62c4o0lA_



not modelled 17.8 18
PDB header:oxidoreductase
Chain: A: PDB Molecule:nadph-dependent 3-quinuclidinone reductase;
PDBTitle: crystal structure of nadph-dependent 3-quinuclidinone reductase from2 rhodotorula rubra
63c3knzA_



not modelled 17.7 15
PDB header:sugar binding protein
Chain: A: PDB Molecule:putative sugar binding protein;
PDBTitle: crystal structure of putative sugar binding protein (np_459565.1) from2 salmonella typhimurium lt2 at 2.50 a resolution
64d1vdha_



not modelled 17.6 27
Fold:Ferredoxin-like
Superfamily:Dimeric alpha+beta barrel
Family:Chlorite dismutase-like
65d1vmaa2



not modelled 17.4 36
Fold:P-loop containing nucleoside triphosphate hydrolases
Superfamily:P-loop containing nucleoside triphosphate hydrolases
Family:Nitrogenase iron protein-like
66c5ze4A_



not modelled 17.4 21
PDB header:lyase
Chain: A: PDB Molecule:dihydroxy-acid dehydratase, chloroplastic;
PDBTitle: the structure of holo- structure of dhad complex with [2fe-2s] cluster
67d2hi6a1



not modelled 17.3 13
Fold:The "swivelling" beta/beta/alpha domain
Superfamily:LeuD/IlvD-like
Family:AF0055-like
68c1z34A_



not modelled 17.2 12
PDB header:transferase
Chain: A: PDB Molecule:purine nucleoside phosphorylase;
PDBTitle: crystal structure of trichomonas vaginalis purine nucleoside2 phosphorylase complexed with 2-fluoro-2'-deoxyadenosine
69d2bzga1



not modelled 16.9 17
Fold:S-adenosyl-L-methionine-dependent methyltransferases
Superfamily:S-adenosyl-L-methionine-dependent methyltransferases
Family:Thiopurine S-methyltransferase
70c1tcvB_



not modelled 16.5 10
PDB header:transferase
Chain: B: PDB Molecule:purine-nucleoside phosphorylase;
PDBTitle: crystal structure of the purine nucleoside phosphorylase2 from schistosoma mansoni in complex with non-detergent3 sulfobetaine 195 and acetate
71c3pg8B_



not modelled 16.4 26
PDB header:transferase
Chain: B: PDB Molecule:phospho-2-dehydro-3-deoxyheptonate aldolase;
PDBTitle: truncated form of 3-deoxy-d-arabino-heptulosonate 7-phosphate synthase2 from thermotoga maritima
72c5oynB_



not modelled 16.4 27
PDB header:lyase
Chain: B: PDB Molecule:dehydratase, ilvd/edd family;
PDBTitle: crystal structure of d-xylonate dehydratase in holo-form
73c4s1wA_



not modelled 16.0 11
PDB header:transferase
Chain: A: PDB Molecule:glutamine--fructose-6-phosphate aminotransferase
PDBTitle: structure of a putative glutamine--fructose-6-phosphate2 aminotransferase from staphylococcus aureus subsp. aureus mu50
74c5onkA_



not modelled 15.9 21
PDB header:hydrolase
Chain: A: PDB Molecule:yndl;
PDBTitle: native yndl
75c2xd4A_



not modelled 15.9 34
PDB header:ligase
Chain: A: PDB Molecule:phosphoribosylamine--glycine ligase;
PDBTitle: nucleotide-bound structures of bacillus subtilis glycinamide2 ribonucleotide synthetase
76c5ojgB_



not modelled 15.8 28
PDB header:oxidoreductase
Chain: B: PDB Molecule:dehydrogenase/reductase sdr family member 4;
PDBTitle: crystal structure of the dehydrogenase/reductase sdr family member 42 (dhrs4) from caenorhabditis elegans
77d1oqya1



not modelled 15.1 31
Fold:RuvA C-terminal domain-like
Superfamily:UBA-like
Family:UBA domain
78c2cunA_



not modelled 15.1 18
PDB header:transferase
Chain: A: PDB Molecule:phosphoglycerate kinase;
PDBTitle: crystal structure of phosphoglycerate kinase from pyrococcus2 horikoshii ot3
79c4ds1C_



not modelled 14.5 33
PDB header:structural protein/transport protein
Chain: C: PDB Molecule:dynein light chain 1, cytoplasmic;
PDBTitle: the structure of a yeast dyn2-nup159 complex and the molecular basis2 for the dynein light chain - nuclear pore interaction
80c5uqiA_



not modelled 14.3 13
PDB header:isomerase
Chain: A: PDB Molecule:phosphosugar isomerase;
PDBTitle: e. coli cft073 c3406 in complex with a5p
81c4lkrA_



not modelled 14.2 10
PDB header:transferase
Chain: A: PDB Molecule:purine nucleoside phosphorylase deod-type;
PDBTitle: crystal structure of deod-3 gene product from shewanella oneidensis2 mr-1, nysgrc target 029437
82d1c55a_



not modelled 14.0 31
Fold:Knottins (small inhibitors, toxins, lectins)
Superfamily:Scorpion toxin-like
Family:Short-chain scorpion toxins
83d1assa_



not modelled 13.8 24
Fold:The "swivelling" beta/beta/alpha domain
Superfamily:GroEL apical domain-like
Family:Group II chaperonin (CCT, TRIC), apical domain
84c3m4qA_



not modelled 13.7 20
PDB header:ligase
Chain: A: PDB Molecule:asparaginyl-trna synthetase, putative;
PDBTitle: entamoeba histolytica asparaginyl-trna synthetase (asnrs)
85c4q0rB_



not modelled 13.5 10
PDB header:hydrolase/dna
Chain: B: PDB Molecule:dna repair protein rad2;
PDBTitle: the catalytic core of rad2 (complex i)
86c3g68A_



not modelled 13.5 20
PDB header:isomerase
Chain: A: PDB Molecule:putative phosphosugar isomerase;
PDBTitle: crystal structure of a putative phosphosugar isomerase (cd3275) from2 clostridium difficile 630 at 1.80 a resolution
87d1uadc_



not modelled 13.5 31
Fold:Immunoglobulin-like beta-sandwich
Superfamily:E set domains
Family:Other IPT/TIG domains
88d1cmia_



not modelled 13.5 33
Fold:DLC
Superfamily:DLC
Family:DLC
89c2jgqB_



not modelled 13.4 8
PDB header:isomerase
Chain: B: PDB Molecule:triosephosphate isomerase;
PDBTitle: kinetics and structural properties of triosephosphate2 isomerase from helicobacter pylori
90c3bk7A_



not modelled 13.4 38
PDB header:hydrolyase/translation
Chain: A: PDB Molecule:abc transporter atp-binding protein;
PDBTitle: structure of the complete abce1/rnaase-l inhibitor protein from2 pyrococcus abysii
91c2d2aA_



not modelled 13.4 26
PDB header:metal transport
Chain: A: PDB Molecule:sufa protein;
PDBTitle: crystal structure of escherichia coli sufa involved in biosynthesis of2 iron-sulfur clusters
92d2btma_



not modelled 13.4 21
Fold:TIM beta/alpha-barrel
Superfamily:Triosephosphate isomerase (TIM)
Family:Triosephosphate isomerase (TIM)
93d1d3va_



not modelled 13.4 31
Fold:Arginase/deacetylase
Superfamily:Arginase/deacetylase
Family:Arginase-like amidino hydrolases
94c4yqyA_



not modelled 12.7 21
PDB header:oxidoreductase
Chain: A: PDB Molecule:putative dehydrogenase;
PDBTitle: crystal structure of a putative dehydrogenase from sulfitobacter sp.2 (cog1028) (target efi-513936) in its apo form
95c5e38D_



not modelled 12.3 21
PDB header:transferase
Chain: D: PDB Molecule:uracil phosphoribosyltransferase;
PDBTitle: structural basis of mapping the spontaneous mutations with 5-2 flourouracil in uracil phosphoribosyltransferase from mycobacterium3 tuberculosis
96c3uekA_



not modelled 12.1 33
PDB header:hydrolase
Chain: A: PDB Molecule:poly(adp-ribose) glycohydrolase;
PDBTitle: crystal structure of the catalytic domain of rat poly (adp-ribose)2 glycohydrolase
97d3e2ba1



not modelled 12.1 33
Fold:DLC
Superfamily:DLC
Family:DLC
98c1wj9A_



not modelled 11.6 43
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:crispr-associated protein;
PDBTitle: crystal structure of a crispr-associated protein from2 thermus thermophilus
99c3fkjA_



not modelled 11.6 15
PDB header:isomerase
Chain: A: PDB Molecule:putative phosphosugar isomerases;
PDBTitle: crystal structure of a putative phosphosugar isomerase (stm_0572) from2 salmonella typhimurium lt2 at 2.12 a resolution

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