Phyre Home Retrieve Phyre Job Id
Emailmdejesus@rockefeller.edu
DescriptionRVBD2988c_(leuC)_3344664_3346085
DateThu Aug 8 16:20:15 BST 2019
Unique Job IDf705b435c8d400f8
SequenceMALQTGEPRT ... Download FASTA
Job Typenormal
Job Expiry

Summary 

Top model
Image coloured by rainbow N → C terminus
Model dimensions (Å):X:62.193 Y:58.298 Z:53.255
Model (left) based on template c4kp1A_
Top template information
PDB header:isomerase
Chain: A: PDB Molecule:isopropylmalate/citramalate isomerase large subunit;
PDBTitle: crystal structure of ipm isomerase large subunit from methanococcus2 jannaschii (mj0499)
Confidence and coverage
Confidence:100.0% Coverage: 89%
419 residues ( 89% of your sequence) have been modelled with 100.0% confidence by the single highest scoring template.
Additional confident templates have been detected (see Domain analysis) which cover other regions of your sequence.
470 residues ( 99%) could be modelled at >90% confidence using multiple-templates.
You may wish to try resubmitting your sequence in "intensive" mode to model more of your sequence.
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Sequence analysis 

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Secondary structure and disorder prediction [Show] 

Domain analysis [Show] 

Detailed template information [Hide] 

 

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Template Alignment Coverage3D Model Confidence
% i.d. Template Information
1c4kp1A_



100.0 36
PDB header:isomerase
Chain: A: PDB Molecule:isopropylmalate/citramalate isomerase large subunit;
PDBTitle: crystal structure of ipm isomerase large subunit from methanococcus2 jannaschii (mj0499)
2c4kp2A_



100.0 34
PDB header:lyase
Chain: A: PDB Molecule:homoaconitase large subunit;
PDBTitle: crystal structure of homoaconitase large subunit from methanococcus2 jannaschii (mj1003)
3d1acoa2



100.0 26
Fold:Aconitase iron-sulfur domain
Superfamily:Aconitase iron-sulfur domain
Family:Aconitase iron-sulfur domain
4d1l5ja3



100.0 24
Fold:Aconitase iron-sulfur domain
Superfamily:Aconitase iron-sulfur domain
Family:Aconitase iron-sulfur domain
5c5acnA_



100.0 26
PDB header:lyase(carbon-oxygen)
Chain: A: PDB Molecule:aconitase;
PDBTitle: structure of activated aconitase. formation of the (4fe-4s) cluster in2 the crystal
6d2b3ya2



100.0 22
Fold:Aconitase iron-sulfur domain
Superfamily:Aconitase iron-sulfur domain
Family:Aconitase iron-sulfur domain
7c2b3yB_



100.0 22
PDB header:lyase
Chain: B: PDB Molecule:iron-responsive element binding protein 1;
PDBTitle: structure of a monoclinic crystal form of human cytosolic aconitase2 (irp1)
8c1l5jB_



100.0 25
PDB header:lyase
Chain: B: PDB Molecule:aconitate hydratase 2;
PDBTitle: crystal structure of e. coli aconitase b.
9c3bolB_



63.7 23
PDB header:transferase
Chain: B: PDB Molecule:5-methyltetrahydrofolate s-homocysteine
PDBTitle: cobalamin-dependent methionine synthase (1-566) from2 thermotoga maritima complexed with zn2+
10d3bofa2



57.7 23
Fold:TIM beta/alpha-barrel
Superfamily:Homocysteine S-methyltransferase
Family:Homocysteine S-methyltransferase
11c4cczA_



57.2 26
PDB header:transferase
Chain: A: PDB Molecule:methionine synthase;
PDBTitle: crystal structure of human 5-methyltetrahydrofolate-homocysteine2 methyltransferase, the homocysteine and folate binding domains
12c4oc8A_



41.0 15
PDB header:hydrolase
Chain: A: PDB Molecule:restriction endonuclease aspbhi;
PDBTitle: dna modification-dependent restriction endonuclease aspbhi
13c2e21A_



39.8 17
PDB header:ligase
Chain: A: PDB Molecule:trna(ile)-lysidine synthase;
PDBTitle: crystal structure of tils in a complex with amppnp from aquifex2 aeolicus.
14c1ni5A_



37.8 15
PDB header:cell cycle
Chain: A: PDB Molecule:putative cell cycle protein mesj;
PDBTitle: structure of the mesj pp-atpase from escherichia coli
15c4yajA_



32.6 19
PDB header:ligase
Chain: A: PDB Molecule:alpha subunit of acetyl-coenzyme a synthetase
PDBTitle: ca. korarchaeum cryptofilum dinucleotide forming acetyl-coenzyme a2 synthetase 1 (apo form)
16d1lt7a_



29.3 25
Fold:TIM beta/alpha-barrel
Superfamily:Homocysteine S-methyltransferase
Family:Homocysteine S-methyltransferase
17c4rzlA_



27.5 7
PDB header:dna binding protein
Chain: A: PDB Molecule:restriction endonuclease lpnpi;
PDBTitle: dna recognition domain of the cytosine modification-dependent2 restriction endonuclease lpnpi
18d1umya_



26.2 22
Fold:TIM beta/alpha-barrel
Superfamily:Homocysteine S-methyltransferase
Family:Homocysteine S-methyltransferase
19c4oc8D_



25.3 17
PDB header:hydrolase
Chain: D: PDB Molecule:restriction endonuclease aspbhi;
PDBTitle: dna modification-dependent restriction endonuclease aspbhi
20c5wusA_



24.5 31
PDB header:hydrolase
Chain: A: PDB Molecule:chitinase;
PDBTitle: crystal structure of a insect group iii chitinase (cad2) from ostrinia2 furnacalis
21c3fseB_



not modelled 23.2 20
PDB header:hydrolase
Chain: B: PDB Molecule:two-domain protein containing dj-1/thij/pfpi-like and
PDBTitle: crystal structure of a two-domain protein containing dj-1/thij/pfpi-2 like and ferritin-like domains (ava_4496) from anabaena variabilis3 atcc 29413 at 1.90 a resolution
22c2gp4A_



not modelled 23.1 19
PDB header:lyase
Chain: A: PDB Molecule:6-phosphogluconate dehydratase;
PDBTitle: structure of [fes]cluster-free apo form of 6-phosphogluconate2 dehydratase from shewanella oneidensis
23c5ze4A_



not modelled 20.7 15
PDB header:lyase
Chain: A: PDB Molecule:dihydroxy-acid dehydratase, chloroplastic;
PDBTitle: the structure of holo- structure of dhad complex with [2fe-2s] cluster
24c2oxlA_



not modelled 20.7 47
PDB header:gene regulation
Chain: A: PDB Molecule:hypothetical protein ymgb;
PDBTitle: structure and function of the e. coli protein ymgb: a protein critical2 for biofilm formation and acid resistance
25c3a2kB_



not modelled 20.3 24
PDB header:ligase/rna
Chain: B: PDB Molecule:trna(ile)-lysidine synthase;
PDBTitle: crystal structure of tils complexed with trna
26c5u32A_



not modelled 19.2 15
PDB header:transferase
Chain: A: PDB Molecule:trna ligase;
PDBTitle: crystal structure of fungal rna kinase
27d1c0aa2



not modelled 18.6 21
Fold:DCoH-like
Superfamily:GAD domain-like
Family:GAD domain
28c5fifD_



not modelled 18.5 15
PDB header:ligase
Chain: D: PDB Molecule:carboxylase;
PDBTitle: carboxyltransferase domain of a single-chain bacterial carboxylase
29c4l6wA_



not modelled 18.5 19
PDB header:ligase
Chain: A: PDB Molecule:probable propionyl-coa carboxylase beta chain 6;
PDBTitle: carboxyltransferase subunit (accd6) of mycobacterium tuberculosis2 acetyl-coa carboxylase
30c2xivA_



not modelled 18.4 17
PDB header:structural protein
Chain: A: PDB Molecule:hypothetical invasion protein;
PDBTitle: structure of rv1477, hypothetical invasion protein of mycobacterium2 tuberculosis
31c4rcnA_



not modelled 18.1 11
PDB header:ligase
Chain: A: PDB Molecule:long-chain acyl-coa carboxylase;
PDBTitle: structure and function of a single-chain, multi-domain long-chain2 acyl-coa carboxylase
32d1ejba_



not modelled 17.9 14
Fold:Lumazine synthase
Superfamily:Lumazine synthase
Family:Lumazine synthase
33c2jz2A_



not modelled 17.6 17
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:ssl0352 protein;
PDBTitle: solution nmr structure of ssl0352 protein from synechocystis sp. pcc2 6803. northeast structural genomics consortium target sgr42
34d2gp4a2



not modelled 16.4 19
Fold:IlvD/EDD N-terminal domain-like
Superfamily:IlvD/EDD N-terminal domain-like
Family:lvD/EDD N-terminal domain-like
35c2kqvA_



not modelled 15.8 39
PDB header:viral protein
Chain: A: PDB Molecule:non-structural protein 3;
PDBTitle: sars coronavirus-unique domain (sud): three-domain molecular2 architecture in solution and rna binding. i: structure of the sud-m3 domain of sud-mc
36c3uk7B_



not modelled 15.8 26
PDB header:transferase
Chain: B: PDB Molecule:class i glutamine amidotransferase-like domain-containing
PDBTitle: crystal structure of arabidopsis thaliana dj-1d
37d1ni5a1



not modelled 15.5 15
Fold:Adenine nucleotide alpha hydrolase-like
Superfamily:Adenine nucleotide alpha hydrolases-like
Family:PP-loop ATPase
38c5mgyG_



not modelled 15.5 11
PDB header:protein binding
Chain: G: PDB Molecule:fad:protein fmn transferase;
PDBTitle: crystal structure of pseudomonas stutzeri flavinyl transferase apbe,2 apo form
39c2yb1A_



not modelled 15.4 14
PDB header:hydrolase
Chain: A: PDB Molecule:amidohydrolase;
PDBTitle: structure of an amidohydrolase from chromobacterium violaceum (efi2 target efi-500202) with bound mn, amp and phosphate.
40d1oi4a1



not modelled 15.2 36
Fold:Flavodoxin-like
Superfamily:Class I glutamine amidotransferase-like
Family:DJ-1/PfpI
41c3iz5Q_



not modelled 14.8 9
PDB header:ribosome
Chain: Q: PDB Molecule:60s ribosomal protein l5 (l18p);
PDBTitle: localization of the large subunit ribosomal proteins into a 5.5 a2 cryo-em map of triticum aestivum translating 80s ribosome
42c2gksB_



not modelled 13.0 17
PDB header:transferase
Chain: B: PDB Molecule:bifunctional sat/aps kinase;
PDBTitle: crystal structure of the bi-functional atp sulfurylase-aps kinase from2 aquifex aeolicus, a chemolithotrophic thermophile
43c2jzfA_



not modelled 13.0 39
PDB header:viral protein
Chain: A: PDB Molecule:replicase polyprotein 1ab;
PDBTitle: nmr conformer closest to the mean coordinates of the domain 513-651 of2 the sars-cov nonstructural protein nsp3
44c5uidC_



not modelled 12.5 13
PDB header:transferase
Chain: C: PDB Molecule:aminotransferase tlmj;
PDBTitle: the crystal structure of an aminotransferase tlmj from2 streptoalloteichus hindustanus
45c4lkrA_



not modelled 12.4 16
PDB header:transferase
Chain: A: PDB Molecule:purine nucleoside phosphorylase deod-type;
PDBTitle: crystal structure of deod-3 gene product from shewanella oneidensis2 mr-1, nysgrc target 029437
46c1htrP_



not modelled 12.3 25
PDB header:aspartyl protease
Chain: P: PDB Molecule:progastricsin (pro segment);
PDBTitle: crystal and molecular structures of human progastricsin at 1.622 angstroms resolution
47c2x24B_



not modelled 12.1 16
PDB header:ligase
Chain: B: PDB Molecule:acetyl-coa carboxylase;
PDBTitle: bovine acc2 ct domain in complex with inhibitor
48d1c41a_



not modelled 11.7 16
Fold:Lumazine synthase
Superfamily:Lumazine synthase
Family:Lumazine synthase
49c5yudA_



not modelled 11.6 26
PDB header:immune system
Chain: A: PDB Molecule:baculoviral iap repeat-containing protein 1e;
PDBTitle: flagellin derivative in complex with the nlr protein naip5
50c6b4cH_



not modelled 11.6 9
PDB header:antiviral protein
Chain: H: PDB Molecule:viperin;
PDBTitle: structure of viperin from trichoderma virens
51c1x0uB_



not modelled 11.5 20
PDB header:lyase
Chain: B: PDB Molecule:hypothetical methylmalonyl-coa decarboxylase alpha subunit;
PDBTitle: crystal structure of the carboxyl transferase subunit of putative pcc2 of sulfolobus tokodaii
52c4m70E_



not modelled 11.5 31
PDB header:plant protein
Chain: E: PDB Molecule:ran gtpase activating protein 2;
PDBTitle: crystal structure of potato rx-cc domain in complex with rangap2-wpp2 domain
53c4mnpA_



not modelled 11.4 11
PDB header:sugar binding protein
Chain: A: PDB Molecule:n-acetylneuraminate-binding protein;
PDBTitle: structure of the sialic acid binding protein from fusobacterium2 nucleatum subsp. nucleatum atcc 25586
54c5jw6A_



not modelled 11.3 19
PDB header:oxidoreductase
Chain: A: PDB Molecule:aspartate-semialdehyde dehydrogenase;
PDBTitle: cystal structure of aspartate semialdehyde dehydrogenase from2 aspergillus fumigatus
55c2w9mB_



not modelled 10.9 20
PDB header:dna replication
Chain: B: PDB Molecule:polymerase x;
PDBTitle: structure of family x dna polymerase from deinococcus2 radiodurans
56c3h8aF_



not modelled 10.9 27
PDB header:lyase/protein binding
Chain: F: PDB Molecule:rnase e;
PDBTitle: crystal structure of e. coli enolase bound to its cognate rnase e2 recognition domain
57c1xovA_



not modelled 10.8 16
PDB header:hydrolase
Chain: A: PDB Molecule:ply protein;
PDBTitle: the crystal structure of the listeria monocytogenes bacteriophage psa2 endolysin plypsa
58c3qpbB_



not modelled 10.8 18
PDB header:transferase
Chain: B: PDB Molecule:uridine phosphorylase;
PDBTitle: crystal structure of streptococcus pyogenes uridine phosphorylase2 reveals a subclass of the np-i superfamily
59c2o2qA_



not modelled 10.7 17
PDB header:oxidoreductase
Chain: A: PDB Molecule:formyltetrahydrofolate dehydrogenase;
PDBTitle: crystal structure of the c-terminal domain of rat2 10'formyltetrahydrofolate dehydrogenase in complex with nadp
60c5kf6B_



not modelled 10.6 17
PDB header:oxidoreductase
Chain: B: PDB Molecule:bifunctional protein puta;
PDBTitle: structure of proline utilization a from sinorhizobium meliloti2 complexed with l-tetrahydrofuroic acid and nad+ in space group p21
61c3h8aE_



not modelled 10.3 27
PDB header:lyase/protein binding
Chain: E: PDB Molecule:rnase e;
PDBTitle: crystal structure of e. coli enolase bound to its cognate rnase e2 recognition domain
62c3io1B_



not modelled 10.3 17
PDB header:hydrolase
Chain: B: PDB Molecule:aminobenzoyl-glutamate utilization protein;
PDBTitle: crystal structure of aminobenzoyl-glutamate utilization2 protein from klebsiella pneumoniae
63c4binA_



not modelled 10.3 12
PDB header:hydrolase
Chain: A: PDB Molecule:n-acetylmuramoyl-l-alanine amidase amic;
PDBTitle: crystal structure of the e. coli n-acetylmuramoyl-l-alanine amidase2 amic
64d1sqda2



not modelled 10.1 28
Fold:Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase
Superfamily:Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase
Family:Extradiol dioxygenases
65c6b5bA_



not modelled 10.1 26
PDB header:immune system
Chain: A: PDB Molecule:baculoviral iap repeat-containing protein 1e;
PDBTitle: cryo-em structure of the naip5-nlrc4-flagellin inflammasome
66d1ppya_



not modelled 10.1 19
Fold:Double psi beta-barrel
Superfamily:ADC-like
Family:Pyruvoyl dependent aspartate decarboxylase, ADC
67d2a7sa1



not modelled 10.1 15
Fold:ClpP/crotonase
Superfamily:ClpP/crotonase
Family:Biotin dependent carboxylase carboxyltransferase domain
68d2ac7a1



not modelled 10.0 15
Fold:Phosphorylase/hydrolase-like
Superfamily:Purine and uridine phosphorylases
Family:Purine and uridine phosphorylases
69c3pbiA_



not modelled 9.9 19
PDB header:hydrolase
Chain: A: PDB Molecule:invasion protein;
PDBTitle: structure of the peptidoglycan hydrolase ripb (rv1478) from2 mycobacterium tuberculosis at 1.6 resolution
70c5d3aA_



not modelled 9.8 50
PDB header:motor protein
Chain: A: PDB Molecule:kinesin-like protein kif21a;
PDBTitle: kif21a regulatory coiled coil
71c3v9iD_



not modelled 9.7 9
PDB header:oxidoreductase
Chain: D: PDB Molecule:delta-1-pyrroline-5-carboxylate dehydrogenase,
PDBTitle: crystal structure of human 1-pyrroline-5-carboxylate dehydrogenase2 mutant s352l
72c2nvgA_



not modelled 9.6 15
PDB header:oxidoreductase
Chain: A: PDB Molecule:ubiquinol-cytochrome c reductase iron-sulfur subunit;
PDBTitle: soluble domain of rieske iron sulfur protein.
73d1v8ba2



not modelled 9.6 37
Fold:Flavodoxin-like
Superfamily:Formate/glycerate dehydrogenase catalytic domain-like
Family:S-adenosylhomocystein hydrolase
74c3hskB_



not modelled 9.5 13
PDB header:oxidoreductase
Chain: B: PDB Molecule:aspartate-semialdehyde dehydrogenase;
PDBTitle: crystal structure of aspartate semialdehyde dehydrogenase with nadp2 from candida albicans
75c4xb6D_



not modelled 9.5 14
PDB header:transferase
Chain: D: PDB Molecule:alpha-d-ribose 1-methylphosphonate 5-phosphate c-p lyase;
PDBTitle: structure of the e. coli c-p lyase core complex
76c5ip4E_



not modelled 9.4 16
PDB header:transferase
Chain: E: PDB Molecule:neuronal migration protein doublecortin;
PDBTitle: x-ray structure of the c-terminal domain of human doublecortin
77c5ux5C_



not modelled 9.4 23
PDB header:oxidoreductase/transferase
Chain: C: PDB Molecule:bifunctional protein proline utilization a (puta);
PDBTitle: structure of proline utilization a (puta) from corynebacterium2 freiburgense
78c2ebbA_



not modelled 9.3 15
PDB header:lyase
Chain: A: PDB Molecule:pterin-4-alpha-carbinolamine dehydratase;
PDBTitle: crystal structure of pterin-4-alpha-carbinolamine2 dehydratase (pterin carbinolamine dehydratase) from3 geobacillus kaustophilus hta426
79c2fgxA_



not modelled 9.2 30
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:putative thioredoxin;
PDBTitle: solution nmr structure of protein ne2328 from nitrosomonas2 europaea. northeast structural genomics consortium target3 net3.
80c4pfrB_



not modelled 9.1 18
PDB header:solute-binding protein
Chain: B: PDB Molecule:trap dicarboxylate transporter, dctp subunit;
PDBTitle: crystal structure of a trap periplasmic solute binding protein from2 rhodobacter sphaeroides (rsph17029_3541, target efi-510203), apo open3 partially disordered
81c6hlwB_



not modelled 9.1 29
PDB header:viral protein
Chain: B: PDB Molecule:genome polyprotein;
PDBTitle: crystal structure of human acbd3 gold domain in complex with 3a2 protein of enterovirus-a71 (fusion protein)
82d1obra_



not modelled 9.0 33
Fold:Phosphorylase/hydrolase-like
Superfamily:Zn-dependent exopeptidases
Family:Carboxypeptidase T
83c1od4C_



not modelled 9.0 16
PDB header:ligase
Chain: C: PDB Molecule:acetyl-coenzyme a carboxylase;
PDBTitle: acetyl-coa carboxylase carboxyltransferase domain
84c3gyyC_



not modelled 9.0 27
PDB header:transport protein
Chain: C: PDB Molecule:periplasmic substrate binding protein;
PDBTitle: the ectoine binding protein of the teaabc trap transporter teaa in the2 apo-state
85c4m3nA_



not modelled 8.9 12
PDB header:transferase
Chain: A: PDB Molecule:purine nucleoside phosphorylase deod-type;
PDBTitle: crystal structure of purine nucleoside phosphorylase from meiothermus2 ruber dsm 1279, nysgrc target 029804.
86c5ingC_



not modelled 8.8 12
PDB header:transferase
Chain: C: PDB Molecule:putative carboxyl transferase;
PDBTitle: a crotonyl-coa reductase-carboxylase independent pathway for assembly2 of unusual alkylmalonyl-coa polyketide synthase extender unit
87d2ga5a1



not modelled 8.7 29
Fold:N domain of copper amine oxidase-like
Superfamily:Frataxin/Nqo15-like
Family:Frataxin-like
88c2k89A_



not modelled 8.7 21
PDB header:protein binding
Chain: A: PDB Molecule:phospholipase a-2-activating protein;
PDBTitle: solution structure of a novel ubiquitin-binding domain from2 human plaa (pfuc, gly76-pro77 cis isomer)
89d1f0xa1



not modelled 8.7 11
Fold:Ferredoxin-like
Superfamily:FAD-linked oxidases, C-terminal domain
Family:D-lactate dehydrogenase
90d1wvfa1



not modelled 8.6 11
Fold:Ferredoxin-like
Superfamily:FAD-linked oxidases, C-terminal domain
Family:Vanillyl-alcohol oxidase-like
91d1woha_



not modelled 8.6 28
Fold:Arginase/deacetylase
Superfamily:Arginase/deacetylase
Family:Arginase-like amidino hydrolases
92d1sp8a2



not modelled 8.5 15
Fold:Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase
Superfamily:Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase
Family:Extradiol dioxygenases
93c4jc0B_



not modelled 8.5 14
PDB header:transferase
Chain: B: PDB Molecule:ribosomal protein s12 methylthiotransferase rimo;
PDBTitle: crystal structure of thermotoga maritima holo rimo in complex with2 pentasulfide, northeast structural genomics consortium target vr77
94d2byea1



not modelled 8.5 19
Fold:beta-Grasp (ubiquitin-like)
Superfamily:Ubiquitin-like
Family:Ras-binding domain, RBD
95c1g8gB_



not modelled 8.3 13
PDB header:transferase
Chain: B: PDB Molecule:sulfate adenylyltransferase;
PDBTitle: atp sulfurylase from s. cerevisiae: the binary product complex with2 aps
96d1iuka_



not modelled 8.3 21
Fold:NAD(P)-binding Rossmann-fold domains
Superfamily:NAD(P)-binding Rossmann-fold domains
Family:CoA-binding domain
97c6hmvB_



not modelled 8.3 21
PDB header:viral protein
Chain: B: PDB Molecule:genome polyprotein;
PDBTitle: crystal structure of human acbd3 gold domain in complex with 3a2 protein of enterovirus-d68 (fusion protein, lvvy mutant)
98c4uoiB_



not modelled 8.2 28
PDB header:viral protein
Chain: B: PDB Molecule:genome polyprotein;
PDBTitle: unexpected structure for the n-terminal domain of hepatitis c virus2 envelope glycoprotein e1
99d1skye2



not modelled 8.1 17
Fold:Domain of alpha and beta subunits of F1 ATP synthase-like
Superfamily:N-terminal domain of alpha and beta subunits of F1 ATP synthase
Family:N-terminal domain of alpha and beta subunits of F1 ATP synthase

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