Phyre Home Retrieve Phyre Job Id
Emailmdejesus@rockefeller.edu
DescriptionRVBD2993c_(-)_3350284_3351003
DateThu Aug 8 16:20:16 BST 2019
Unique Job ID17af2dede0e704fb
SequenceMTAREIAEHP ... Download FASTA
Job Typenormal
Job Expiry

Summary 

Top model
Image coloured by rainbow N → C terminus
Model dimensions (Å):X:48.969 Y:36.084 Z:56.698
Model (left) based on template c4dbhA_
Top template information
PDB header:isomerase
Chain: A: PDB Molecule:2-hydroxyhepta-2,4-diene-1,7-dioate isomerase;
PDBTitle: crystal structure of cg1458 with inhibitor
Confidence and coverage
Confidence:100.0% Coverage: 98%
235 residues ( 98% of your sequence) have been modelled with 100.0% confidence by the single highest scoring template.
3D viewing
Interactive 3D view in JSmol
For other options to view your downloaded structure offline see the FAQ

Sequence analysis 

Download FASTA version

Secondary structure and disorder prediction [Show] 

Domain analysis [Show] 

Detailed template information [Hide] 

 

#
Template Alignment Coverage3D Model Confidence
% i.d. Template Information
1c4dbhA_



100.0 55
PDB header:isomerase
Chain: A: PDB Molecule:2-hydroxyhepta-2,4-diene-1,7-dioate isomerase;
PDBTitle: crystal structure of cg1458 with inhibitor
2c6iymB_



100.0 46
PDB header:hydrolase
Chain: B: PDB Molecule:5-oxopent-3-ene-1,2,5-tricarboxylate decarboxylase;
PDBTitle: fumarylacetoacetate hydrolase (eafah) from psychrophilic2 exiguobacterium antarcticum
3c2dfuB_



100.0 39
PDB header:isomerase
Chain: B: PDB Molecule:probable 2-hydroxyhepta-2,4-diene-1,7-dioate isomerase;
PDBTitle: crystal structure of the 2-hydroxyhepta-2,4-diene-1,7-dioate isomerase2 from thermus thermophilus hb8
4c3qdfA_



100.0 95
PDB header:isomerase
Chain: A: PDB Molecule:2-hydroxyhepta-2,4-diene-1,7-dioate isomerase;
PDBTitle: crystal structure of 2-hydroxyhepta-2,4-diene-1,7-dioate isomerase2 from mycobacterium marinum
5c3r6oA_



100.0 36
PDB header:isomerase
Chain: A: PDB Molecule:2-hydroxyhepta-2,4-diene-1, 7-dioateisomerase;
PDBTitle: crystal structure of a probable 2-hydroxyhepta-2,4-diene-1, 7-2 dioateisomerase from mycobacterium abscessus
6c1wzoC_



100.0 43
PDB header:isomerase
Chain: C: PDB Molecule:hpce;
PDBTitle: crystal structure of the hpce from thermus thermophilus hb8
7c1i7oC_



100.0 36
PDB header:isomerase, lyase
Chain: C: PDB Molecule:4-hydroxyphenylacetate degradation bifunctional
PDBTitle: crystal structure of hpce
8c3lzkC_



100.0 23
PDB header:hydrolase
Chain: C: PDB Molecule:fumarylacetoacetate hydrolase family protein;
PDBTitle: the crystal structure of a probably aromatic amino acid2 degradation protein from sinorhizobium meliloti 1021
9c3s52A_



100.0 35
PDB header:hydrolase
Chain: A: PDB Molecule:putative fumarylacetoacetate hydrolase family protein;
PDBTitle: crystal structure of a putative fumarylacetoacetate hydrolase family2 protein from yersinia pestis co92
10c4maqB_



100.0 33
PDB header:hydrolase
Chain: B: PDB Molecule:putative fumarylpyruvate hydrolase;
PDBTitle: crystal structure of a putative fumarylpyruvate hydrolase from2 burkholderia cenocepacia
11c2q1dX_



100.0 27
PDB header:lyase
Chain: X: PDB Molecule:2-keto-3-deoxy-d-arabinonate dehydratase;
PDBTitle: 2-keto-3-deoxy-d-arabinonate dehydratase complexed with magnesium and2 2,5-dioxopentanoate
12d1gtta2



100.0 36
Fold:FAH
Superfamily:FAH
Family:FAH
13c6jvwA_



100.0 43
PDB header:hydrolase
Chain: A: PDB Molecule:maleylpyruvate hydrolase;
PDBTitle: crystal structure of maleylpyruvate hydrolase from sphingobium sp.2 syk-6 in complex with manganese (ii) ion and pyruvate
14c3l53F_



100.0 34
PDB header:structural genomics, unknown function
Chain: F: PDB Molecule:putative fumarylacetoacetate isomerase/hydrolase;
PDBTitle: crystal structure of a putative fumarylacetoacetate2 isomerase/hydrolase from oleispira antarctica
15d1gtta1



100.0 31
Fold:FAH
Superfamily:FAH
Family:FAH
16d1nr9a_



100.0 37
Fold:FAH
Superfamily:FAH
Family:FAH
17d1sawa_



100.0 43
Fold:FAH
Superfamily:FAH
Family:FAH
18d1nkqa_



100.0 34
Fold:FAH
Superfamily:FAH
Family:FAH
19c4qkuC_



100.0 28
PDB header:hydrolase
Chain: C: PDB Molecule:hydrolase;
PDBTitle: crystal structure of a putative hydrolase from burkholderia2 cenocepacia
20c1hyoB_



100.0 32
PDB header:hydrolase
Chain: B: PDB Molecule:fumarylacetoacetate hydrolase;
PDBTitle: crystal structure of fumarylacetoacetate hydrolase2 complexed with 4-(hydroxymethylphosphinoyl)-3-oxo-butanoic3 acid
21d1hyoa2



not modelled 100.0 34
Fold:FAH
Superfamily:FAH
Family:FAH
22d1sv6a_



not modelled 100.0 19
Fold:FAH
Superfamily:FAH
Family:FAH
23c5d2hA_



not modelled 100.0 14
PDB header:lyase
Chain: A: PDB Molecule:4-oxalocrotonate decarboxylase nahk;
PDBTitle: 4-oxalocrotonate decarboxylase from pseudomonas putida g7 - complexed2 with magnesium and alpha-ketoglutarate
24c2eb5D_



not modelled 100.0 14
PDB header:lyase
Chain: D: PDB Molecule:2-oxo-hept-3-ene-1,7-dioate hydratase;
PDBTitle: crystal structure of hpcg complexed with oxalate
25d2cu3a1



not modelled 62.4 19
Fold:beta-Grasp (ubiquitin-like)
Superfamily:MoaD/ThiS
Family:ThiS
26c2kl0A_



not modelled 57.5 13
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:putative thiamin biosynthesis this;
PDBTitle: solution nmr structure of rhodopseudomonas palustris rpa3574,2 northeast structural genomics consortium (nesg) target rpr325
27c6b4aB_



not modelled 51.9 18
PDB header:structural protein
Chain: B: PDB Molecule:doublecortin;
PDBTitle: crystal structure of the c-terminal domain of doublecortin (tgdcx)2 from toxoplasma gondii me49
28d2evra2



not modelled 47.8 32
Fold:Cysteine proteinases
Superfamily:Cysteine proteinases
Family:NlpC/P60
29c3cwiA_



not modelled 45.2 16
PDB header:biosynthetic protein
Chain: A: PDB Molecule:thiamine-biosynthesis protein this;
PDBTitle: crystal structure of thiamine biosynthesis protein (this)2 from geobacter metallireducens. northeast structural3 genomics consortium target gmr137
30d1zud21



not modelled 44.3 18
Fold:beta-Grasp (ubiquitin-like)
Superfamily:MoaD/ThiS
Family:ThiS
31d2f4la1



not modelled 40.0 33
Fold:CUB-like
Superfamily:Acetamidase/Formamidase-like
Family:Acetamidase/Formamidase-like
32c1tygG_



not modelled 32.0 15
PDB header:biosynthetic protein
Chain: G: PDB Molecule:yjbs;
PDBTitle: structure of the thiazole synthase/this complex
33d1tygb_



not modelled 29.9 15
Fold:beta-Grasp (ubiquitin-like)
Superfamily:MoaD/ThiS
Family:ThiS
34c4ejqB_



not modelled 24.9 38
PDB header:transport protein
Chain: B: PDB Molecule:kinesin-like protein kif1a;
PDBTitle: crystal structure of kif1a c-cc1-fha
35d2g1la1



not modelled 21.3 39
Fold:SMAD/FHA domain
Superfamily:SMAD/FHA domain
Family:FHA domain
36c2n84A_



not modelled 20.0 22
PDB header:isomerase
Chain: A: PDB Molecule:uncharacterized protein;
PDBTitle: solution structure of the fha domain of tbpar42
37d2vbua1



not modelled 19.9 46
Fold:Reductase/isomerase/elongation factor common domain
Superfamily:Riboflavin kinase-like
Family:CTP-dependent riboflavin kinase-like
38d1t8sa_



not modelled 19.9 19
Fold:Phosphorylase/hydrolase-like
Superfamily:Purine and uridine phosphorylases
Family:Purine and uridine phosphorylases
39c2dnfA_



not modelled 19.3 19
PDB header:protein binding
Chain: A: PDB Molecule:doublecortin domain-containing protein 2;
PDBTitle: solution structure of rsgi ruh-062, a dcx domain from human
40d1pk6c_



not modelled 18.6 13
Fold:TNF-like
Superfamily:TNF-like
Family:TNF-like
41c5fwhA_



not modelled 18.5 20
PDB header:structural protein
Chain: A: PDB Molecule:essc;
PDBTitle: n-terminal fha domain from essc a component of the2 bacterial type vii secretion apparatus
42d2ba0a2



not modelled 17.9 39
Fold:Barrel-sandwich hybrid
Superfamily:Ribosomal L27 protein-like
Family:ECR1 N-terminal domain-like
43c3pbiA_



not modelled 17.8 24
PDB header:hydrolase
Chain: A: PDB Molecule:invasion protein;
PDBTitle: structure of the peptidoglycan hydrolase ripb (rv1478) from2 mycobacterium tuberculosis at 1.6 resolution
44c3mjjD_



not modelled 17.8 27
PDB header:hydrolase
Chain: D: PDB Molecule:predicted acetamidase/formamidase;
PDBTitle: crystal structure analysis of a recombinant predicted2 acetamidase/formamidase from the thermophile thermoanaerobacter3 tengcongensis
45c6ccdA_



not modelled 17.3 17
PDB header:protein binding
Chain: A: PDB Molecule:abc transporter atp-binding/permease protein rv1747;
PDBTitle: the crystal structure of mycobacterium tuberculosis rv1747 fha-1
46c1gr3A_



not modelled 16.5 8
PDB header:collagen
Chain: A: PDB Molecule:collagen x;
PDBTitle: structure of the human collagen x nc1 trimer
47d1gr3a_



not modelled 16.5 8
Fold:TNF-like
Superfamily:TNF-like
Family:TNF-like
48c4nv4A_



not modelled 16.3 13
PDB header:hydrolase
Chain: A: PDB Molecule:signal peptidase i;
PDBTitle: 1.8 angstrom crystal structure of signal peptidase i from bacillus2 anthracis.
49c3h41A_



not modelled 16.1 25
PDB header:hydrolase
Chain: A: PDB Molecule:nlp/p60 family protein;
PDBTitle: crystal structure of a nlpc/p60 family protein (bce_2878) from2 bacillus cereus atcc 10987 at 1.79 a resolution
50c6ar2B_



not modelled 14.6 31
PDB header:membrane protein
Chain: B: PDB Molecule:sarcolemmal membrane-associated protein;
PDBTitle: structure of human slmap fha domain in complex with pmst2
51d1ybfa_



not modelled 14.6 21
Fold:Phosphorylase/hydrolase-like
Superfamily:Purine and uridine phosphorylases
Family:Purine and uridine phosphorylases
52c3kw0D_



not modelled 14.4 33
PDB header:hydrolase
Chain: D: PDB Molecule:cysteine peptidase;
PDBTitle: crystal structure of cysteine peptidase (np_982244.1) from bacillus2 cereus atcc 10987 at 2.50 a resolution
53c2xivA_



not modelled 14.3 21
PDB header:structural protein
Chain: A: PDB Molecule:hypothetical invasion protein;
PDBTitle: structure of rv1477, hypothetical invasion protein of mycobacterium2 tuberculosis
54c3fm8A_



not modelled 14.3 42
PDB header:transport protein/hydrolase activator
Chain: A: PDB Molecule:kinesin-like protein kif13b;
PDBTitle: crystal structure of full length centaurin alpha-1 bound with the fha2 domain of kif13b (capri target)
55c5b6lA_



not modelled 13.6 25
PDB header:hydrolase
Chain: A: PDB Molecule:putative serine protease hhoa;
PDBTitle: structure of deg protease hhoa from synechocystis sp. pcc 6803
56c3gt2A_



not modelled 13.5 45
PDB header:unknown function
Chain: A: PDB Molecule:putative uncharacterized protein;
PDBTitle: crystal structure of the p60 domain from m. avium paratuberculosis2 antigen map1272c
57c3qo6B_



not modelled 13.1 29
PDB header:photosynthesis
Chain: B: PDB Molecule:protease do-like 1, chloroplastic;
PDBTitle: crystal structure analysis of the plant protease deg1
58c4wviA_



not modelled 13.1 17
PDB header:hydrolase
Chain: A: PDB Molecule:maltose-binding periplasmic protein,signal peptidase ib;
PDBTitle: crystal structure of the type-i signal peptidase from staphylococcus2 aureus (spsb) in complex with a substrate peptide (pep2).
59c2eh0A_



not modelled 12.7 35
PDB header:transport protein
Chain: A: PDB Molecule:kinesin-like protein kif1b;
PDBTitle: solution structure of the fha domain from human kinesin-2 like protein kif1b
60c3m9bK_



not modelled 12.6 15
PDB header:chaperone
Chain: K: PDB Molecule:proteasome-associated atpase;
PDBTitle: crystal structure of the amino terminal coiled coil domain and the2 inter domain of the mycobacterium tuberculosis proteasomal atpase mpa
61c5svbD_



not modelled 12.0 15
PDB header:ligase
Chain: D: PDB Molecule:acetone carboxylase alpha subunit;
PDBTitle: mechanism of atp-dependent acetone carboxylation, acetone carboxylase2 amp bound structure
62c5kc5A_



not modelled 11.9 13
PDB header:signaling protein
Chain: A: PDB Molecule:cerebellin-1;
PDBTitle: crystal structure of the cbln1 c1q domain trimer
63c6b8cA_



not modelled 11.8 32
PDB header:hydrolase
Chain: A: PDB Molecule:nlp/p60;
PDBTitle: crystal structure of nlpc/p60 domain of peptidoglycan hydrolase saga
64c4egxA_



not modelled 11.7 38
PDB header:transport protein
Chain: A: PDB Molecule:kinesin-like protein kif1a;
PDBTitle: crystal structure of kif1a cc1-fha tandem
65d2je6i2



not modelled 11.5 21
Fold:Barrel-sandwich hybrid
Superfamily:Ribosomal L27 protein-like
Family:ECR1 N-terminal domain-like
66c1rl2A_



not modelled 11.2 25
PDB header:ribosomal protein
Chain: A: PDB Molecule:protein (ribosomal protein l2);
PDBTitle: ribosomal protein l2 rna-binding domain from bacillus2 stearothermophilus
67c5n76C_



not modelled 11.0 32
PDB header:nickel-binding protein
Chain: C: PDB Molecule:coot;
PDBTitle: crystal structure of the apo-form of the co dehydrogenase accessory2 protein coot from rhodospirillum rubrum
68c1kqsA_



not modelled 10.9 22
PDB header:ribosome
Chain: A: PDB Molecule:ribosomal protein l2;
PDBTitle: the haloarcula marismortui 50s complexed with a2 pretranslocational intermediate in protein synthesis
69c3cddD_



not modelled 10.8 19
PDB header:structural protein
Chain: D: PDB Molecule:prophage muso2, 43 kda tail protein;
PDBTitle: crystal structure of prophage muso2, 43 kda tail protein from2 shewanella oneidensis
70c4jonA_



not modelled 10.8 28
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:centrosomal protein of 170 kda;
PDBTitle: crystal structure of a centrosomal protein 170kda, transcript variant2 beta (cep170) from homo sapiens at 2.15 a resolution (psi community3 target, sundstrom)
71d1yvca1



not modelled 10.7 44
Fold:OB-fold
Superfamily:Nucleic acid-binding proteins
Family:TRAM domain
72c5l9wA_



not modelled 10.5 19
PDB header:ligase
Chain: A: PDB Molecule:acetophenone carboxylase delta subunit;
PDBTitle: crystal structure of the apc core complex
73d2gp4a1



not modelled 10.2 21
Fold:The "swivelling" beta/beta/alpha domain
Superfamily:LeuD/IlvD-like
Family:IlvD/EDD C-terminal domain-like
74c5ze4A_



not modelled 10.2 36
PDB header:lyase
Chain: A: PDB Molecule:dihydroxy-acid dehydratase, chloroplastic;
PDBTitle: the structure of holo- structure of dhad complex with [2fe-2s] cluster
75c2pkpA_



not modelled 10.1 37
PDB header:lyase
Chain: A: PDB Molecule:homoaconitase small subunit;
PDBTitle: crystal structure of 3-isopropylmalate dehydratase (leud)2 from methhanocaldococcus jannaschii dsm2661 (mj1271)
76c6a8wA_



not modelled 10.1 38
PDB header:protein binding
Chain: A: PDB Molecule:vacuolar protein sorting-associated protein 64;
PDBTitle: crystal structure of the fha domain of far9
77c5oynB_



not modelled 9.6 33
PDB header:lyase
Chain: B: PDB Molecule:dehydratase, ilvd/edd family;
PDBTitle: crystal structure of d-xylonate dehydratase in holo-form
78c3frnA_



not modelled 9.5 12
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:flagellar protein flga;
PDBTitle: crystal structure of flagellar protein flga from thermotoga maritima2 msb8
79c4v19D_



not modelled 9.4 26
PDB header:ribosome
Chain: D: PDB Molecule:mitoribosomal protein ul2m, mrpl2;
PDBTitle: structure of the large subunit of the mammalian mitoribosome, part 12 of 2
80d1gxca_



not modelled 9.3 15
Fold:SMAD/FHA domain
Superfamily:SMAD/FHA domain
Family:FHA domain
81c1gxcA_



not modelled 9.3 15
PDB header:phosphoprotein-binding domain
Chain: A: PDB Molecule:serine/threonine-protein kinase chk2;
PDBTitle: fha domain from human chk2 kinase in complex with a2 synthetic phosphopeptide
82c3j21B_



not modelled 9.3 33
PDB header:ribosome
Chain: B: PDB Molecule:50s ribosomal protein l2p;
PDBTitle: promiscuous behavior of proteins in archaeal ribosomes revealed by2 cryo-em: implications for evolution of eukaryotic ribosomes (50s3 ribosomal proteins)
83d1ds1a_



not modelled 9.1 24
Fold:Double-stranded beta-helix
Superfamily:Clavaminate synthase-like
Family:Clavaminate synthase
84d2qamc2



not modelled 9.0 42
Fold:OB-fold
Superfamily:Nucleic acid-binding proteins
Family:Cold shock DNA-binding domain-like
85d2q8oa1



not modelled 8.9 22
Fold:TNF-like
Superfamily:TNF-like
Family:TNF-like
86c4ce4D_



not modelled 8.8 26
PDB header:ribosome
Chain: D: PDB Molecule:mrpl2;
PDBTitle: 39s large subunit of the porcine mitochondrial ribosome
87c4d7yA_



not modelled 8.8 22
PDB header:signaling protein
Chain: A: PDB Molecule:c1q-related factor;
PDBTitle: crystal structure of mouse c1ql1 globular domain
88d1rl2a2



not modelled 8.8 33
Fold:OB-fold
Superfamily:Nucleic acid-binding proteins
Family:Cold shock DNA-binding domain-like
89d1c3ha_



not modelled 8.7 13
Fold:TNF-like
Superfamily:TNF-like
Family:TNF-like
90c1o91B_



not modelled 8.7 13
PDB header:structural protein
Chain: B: PDB Molecule:collagen alpha 1(viii) chain;
PDBTitle: crystal structure of a collagen viii nc1 domain trimer
91d1o91a_



not modelled 8.7 13
Fold:TNF-like
Superfamily:TNF-like
Family:TNF-like
92d1hmja_



not modelled 8.6 15
Fold:RPB5-like RNA polymerase subunit
Superfamily:RPB5-like RNA polymerase subunit
Family:RPB5
93c3elsA_



not modelled 8.6 29
PDB header:splicing
Chain: A: PDB Molecule:pre-mrna leakage protein 1;
PDBTitle: crystal structure of yeast pml1p, residues 51-204
94c2z9iB_



not modelled 8.6 21
PDB header:hydrolase
Chain: B: PDB Molecule:probable serine protease pepd;
PDBTitle: crystal structure of rv0983 from mycobacterium tuberculosis-2 proteolytically active form
95c6biqA_



not modelled 8.5 29
PDB header:hydrolase
Chain: A: PDB Molecule:clan ca, family c40, nlpc/p60 superfamily cysteine
PDBTitle: structure of nlpc2 from trichomonas vaginalis
96c3hx1B_



not modelled 8.3 32
PDB header:structural genomics, unknown function
Chain: B: PDB Molecule:slr1951 protein;
PDBTitle: crystal structure of the slr1951 protein from synechocystis sp.2 northeast structural genomics consortium target sgr167a
97d1j99a_



not modelled 8.3 11
Fold:P-loop containing nucleoside triphosphate hydrolases
Superfamily:P-loop containing nucleoside triphosphate hydrolases
Family:PAPS sulfotransferase
98c2jkdB_



not modelled 8.1 31
PDB header:gene regulation
Chain: B: PDB Molecule:pre-mrna leakage protein 1;
PDBTitle: structure of the yeast pml1 splicing factor and its2 integration into the res complex
99c1lcyA_



not modelled 8.1 28
PDB header:hydrolase
Chain: A: PDB Molecule:htra2 serine protease;
PDBTitle: crystal structure of the mitochondrial serine protease htra2

Binding site prediction 

Due to computational demand, binding site predictions are not run for batch jobs

If you want to predict binding sites, please manually submit your model of choice to 3DLigandSite