Phyre Home Retrieve Phyre Job Id
Emailmdejesus@rockefeller.edu
DescriptionRVBD2994_(-)_3351279_3352616
DateThu Aug 8 16:20:16 BST 2019
Unique Job IDcd119fcdc50361f0
SequenceMSRDPTGVGA ... Download FASTA
Job Typenormal
Job Expiry

Summary 

Top model
Image coloured by rainbow N → C terminus
Model dimensions (Å):X:64.138 Y:59.074 Z:55.506
Model (left) based on template c6e9oA_
Top template information
PDB header:membrane protein
Chain: A: PDB Molecule:d-galactonate transport;
PDBTitle: e. coli d-galactonate:proton symporter mutant e133q in the outward2 substrate-bound form
Confidence and coverage
Confidence:100.0% Coverage: 88%
390 residues ( 88% of your sequence) have been modelled with 100.0% confidence by the single highest scoring template.
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Sequence analysis 

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Secondary structure and disorder prediction [Show] 

Domain analysis [Show] 

Detailed template information [Hide] 

 

#
Template Alignment Coverage3D Model Confidence
% i.d. Template Information
1c6e9oA_
100.0 12
PDB header:membrane protein
Chain: A: PDB Molecule:d-galactonate transport;
PDBTitle: e. coli d-galactonate:proton symporter mutant e133q in the outward2 substrate-bound form
2d1pw4a_
100.0 18
Fold:MFS general substrate transporter
Superfamily:MFS general substrate transporter
Family:Glycerol-3-phosphate transporter
3c3wdoA_
100.0 15
PDB header:transport protein
Chain: A: PDB Molecule:mfs transporter;
PDBTitle: structure of e. coli yajr transporter
4c4zp0A_
100.0 11
PDB header:transport protein
Chain: A: PDB Molecule:multidrug transporter mdfa;
PDBTitle: crystal structure of e. coli multidrug transporter mdfa in complex2 with deoxycholate
5c6g9xB_
100.0 15
PDB header:membrane protein
Chain: B: PDB Molecule:major facilitator superfamily mfs_1;
PDBTitle: crystal structure of a mfs transporter at 2.54 angstroem resolution
6c4ldsB_
100.0 15
PDB header:transport protein, membrane protein
Chain: B: PDB Molecule:bicyclomycin resistance protein tcab;
PDBTitle: the inward-facing structure of the glucose transporter from2 staphylococcus epidermidis
7c2gfpA_
100.0 13
PDB header:membrane protein
Chain: A: PDB Molecule:multidrug resistance protein d;
PDBTitle: structure of the multidrug transporter emrd from2 escherichia coli
8d1pv7a_
100.0 12
Fold:MFS general substrate transporter
Superfamily:MFS general substrate transporter
Family:LacY-like proton/sugar symporter
9c1pv7B_
100.0 12
PDB header:transport protein
Chain: B: PDB Molecule:lactose permease;
PDBTitle: crystal structure of lactose permease with tdg
10c4j05A_
100.0 14
PDB header:transport protein
Chain: A: PDB Molecule:phosphate transporter;
PDBTitle: crystal structure of a eukaryotic phosphate transporter
11c4iu8A_
100.0 15
PDB header:transport protein
Chain: A: PDB Molecule:nitrite extrusion protein 2;
PDBTitle: crystal structure of a membrane transporter (selenomethionine2 derivative)
12c6h7dA_
100.0 13
PDB header:membrane protein
Chain: A: PDB Molecule:sugar transport protein 10;
PDBTitle: crystal structure of a. thaliana sugar transport protein 10 in complex2 with glucose in the outward occluded state
13c4cl5B_
100.0 13
PDB header:transport protein
Chain: B: PDB Molecule:nitrate transporter 1.1;
PDBTitle: crystal structure of the nitrate transporter nrt1.1 from2 arabidopsis thaliana in complex with nitrate.
14c4apsB_
100.0 11
PDB header:transport protein
Chain: B: PDB Molecule:di-or tripeptide h+ symporter;
PDBTitle: crystal structure of a pot family peptide transporter in an inward2 open conformation.
15c3o7pA_
100.0 12
PDB header:transport protein
Chain: A: PDB Molecule:l-fucose-proton symporter;
PDBTitle: crystal structure of the e.coli fucose:proton symporter, fucp (n162a)
16c4iu9A_
100.0 11
PDB header:transport protein
Chain: A: PDB Molecule:nitrite extrusion protein 2;
PDBTitle: crystal structure of a membrane transporter
17c5c65A_
100.0 12
PDB header:transport protein
Chain: A: PDB Molecule:solute carrier family 2, facilitated glucose transporter
PDBTitle: structure of the human glucose transporter glut3 / slc2a3
18c6exsA_
100.0 12
PDB header:membrane protein
Chain: A: PDB Molecule:peptide abc transporter permease;
PDBTitle: crystal structure of a pot family transporter in complex with2 thioalcohol conjugated peptide.
19c6gs7A_
100.0 14
PDB header:membrane protein
Chain: A: PDB Molecule:dipeptide and tripeptide permease a;
PDBTitle: crystal structure of peptide transporter dtpa-nanobody in glycine2 buffer
20c4w6vA_
100.0 14
PDB header:transport protein
Chain: A: PDB Molecule:di-/tripeptide transporter;
PDBTitle: crystal structure of a peptide transporter from yersinia2 enterocolitica at 3 a resolution
21c4ikyA_
not modelled 100.0 13
PDB header:transport protein
Chain: A: PDB Molecule:di-tripeptide abc transporter (permease);
PDBTitle: crystal structure of peptide transporter pot (e310q mutant) in complex2 with sulfate
22c4ybqB_
not modelled 100.0 14
PDB header:transport protein/immune system
Chain: B: PDB Molecule:solute carrier family 2, facilitated glucose transporter
PDBTitle: rat glut5 with fv in the outward-open form
23c5aynA_
not modelled 100.0 11
PDB header:transport protein
Chain: A: PDB Molecule:solute carrier family 39 (iron-regulated transporter);
PDBTitle: crystal structure of a bacterial homologue of iron transporter2 ferroportin in outward-facing state
24c4pypA_
not modelled 100.0 13
PDB header:transport protein
Chain: A: PDB Molecule:solute carrier family 2, facilitated glucose transporter
PDBTitle: crystal structure of the human glucose transporter glut1
25c4gbzA_
not modelled 100.0 12
PDB header:transport protein
Chain: A: PDB Molecule:d-xylose-proton symporter;
PDBTitle: the structure of the mfs (major facilitator superfamily) proton:xylose2 symporter xyle bound to d-glucose
26c4q65A_
not modelled 100.0 16
PDB header:transport protein
Chain: A: PDB Molecule:dipeptide permease d;
PDBTitle: structure of the e. coli peptide transporter ybgh
27c6ei3A_
not modelled 100.0 13
PDB header:membrane protein
Chain: A: PDB Molecule:proton-dependent oligopeptide transporter family protein;
PDBTitle: crystal structure of auto inhibited pot family peptide transporter
28c5aymA_
not modelled 100.0 10
PDB header:transport protein
Chain: A: PDB Molecule:solute carrier family 39 (iron-regulated transporter);
PDBTitle: crystal structure of a bacterial homologue of iron transporter2 ferroportin in outward-facing state with soaked iron
29c4lepB_
not modelled 100.0 12
PDB header:membrane protein, tranport protein
Chain: B: PDB Molecule:proton:oligopeptide symporter pot family;
PDBTitle: structural insights into substrate recognition in proton dependent2 oligopeptide transporters
30c2xutC_
not modelled 100.0 12
PDB header:transport protein
Chain: C: PDB Molecule:proton/peptide symporter family protein;
PDBTitle: crystal structure of a proton dependent oligopeptide (pot) family2 transporter.
31c4m64D_
not modelled 99.9 10
PDB header:transport protein
Chain: D: PDB Molecule:melibiose carrier protein;
PDBTitle: 3d crystal structure of na+/melibiose symporter of salmonella2 typhimurium
32c6ob7A_
not modelled 99.7 11
PDB header:transport protein
Chain: A: PDB Molecule:equilibrative nucleoside transporter 1;
PDBTitle: human equilibrative nucleoside transporter-1, dilazep bound
33c3b9yA_
not modelled 29.0 15
PDB header:transport protein
Chain: A: PDB Molecule:ammonium transporter family rh-like protein;
PDBTitle: crystal structure of the nitrosomonas europaea rh protein
34c2kncA_
not modelled 18.1 11
PDB header:cell adhesion
Chain: A: PDB Molecule:integrin alpha-iib;
PDBTitle: platelet integrin alfaiib-beta3 transmembrane-cytoplasmic2 heterocomplex
35c6nbxG_
not modelled 17.5 20
PDB header:oxidoreductase
Chain: G: PDB Molecule:nadh-quinone oxidoreductase subunit j;
PDBTitle: t.elongatus ndh (data-set 2)
36c6eu6A_
not modelled 11.7 10
PDB header:membrane protein
Chain: A: PDB Molecule:ammonium transporter;
PDBTitle: sensor amt protein
37c5aezA_
not modelled 11.5 11
PDB header:membrane protein
Chain: A: PDB Molecule:mep2;
PDBTitle: crystal structure of candida albicans mep2
38c2g9pA_
not modelled 10.2 21
PDB header:antimicrobial protein
Chain: A: PDB Molecule:antimicrobial peptide latarcin 2a;
PDBTitle: nmr structure of a novel antimicrobial peptide, latarcin 2a,2 from spider (lachesana tarabaevi) venom
39c5wlbC_
not modelled 8.8 50
PDB header:protein binding
Chain: C: PDB Molecule:225-15 b;
PDBTitle: kras g12v, bound to gppnhp and miniprotein 225-15a/b
40c5y50A_
not modelled 8.1 11
PDB header:membrane protein
Chain: A: PDB Molecule:protein detoxification 14;
PDBTitle: crystal structure of eukaryotic mate transporter atdtx14
41c2l8sA_
not modelled 7.9 16
PDB header:cell adhesion
Chain: A: PDB Molecule:integrin alpha-1;
PDBTitle: solution nmr structure of transmembrane and cytosolic regions of2 integrin alpha1 in detergent micelles
42c3vvpA_
not modelled 7.2 9
PDB header:transport protein
Chain: A: PDB Molecule:putative uncharacterized protein;
PDBTitle: crystal structure of mate in complex with br-nrf
43c2kluA_
not modelled 7.1 23
PDB header:immune system, membrane protein
Chain: A: PDB Molecule:t-cell surface glycoprotein cd4;
PDBTitle: nmr structure of the transmembrane and cytoplasmic domains2 of human cd4
44c4ainB_
not modelled 6.5 13
PDB header:membrane protein
Chain: B: PDB Molecule:glycine betaine transporter betp;
PDBTitle: crystal structure of betp with asymmetric protomers.
45c2jmvA_
not modelled 6.5 27
PDB header:antiviral protein
Chain: A: PDB Molecule:scytovirin;
PDBTitle: solution structure of scytovirin refined against residual2 dipolar couplings
46c2b6pA_
not modelled 6.5 15
PDB header:membrane protein
Chain: A: PDB Molecule:lens fiber major intrinsic protein;
PDBTitle: x-ray structure of lens aquaporin-0 (aqp0) (lens mip) in an open pore2 state
47d3proc1
not modelled 6.4 5
Fold:Alpha-lytic protease prodomain-like
Superfamily:Alpha-lytic protease prodomain
Family:Alpha-lytic protease prodomain
48c2lm0A_
not modelled 6.1 22
PDB header:nuclear protein
Chain: A: PDB Molecule:af4/fmr2 family member 1/protein af-9 chimera;
PDBTitle: solution structure of the af4-af9 complex
49c5sxpG_
not modelled 5.6 44
PDB header:signaling protein/ligase
Chain: G: PDB Molecule:e3 ubiquitin-protein ligase itchy homolog;
PDBTitle: structural basis for the interaction between itch prr and beta-pix
50c3utmC_
not modelled 5.3 53
PDB header:transferase/signaling protein
Chain: C: PDB Molecule:axin-1;
PDBTitle: crystal structure of a mouse tankyrase-axin complex
51c5sxpF_
not modelled 5.2 44
PDB header:signaling protein/ligase
Chain: F: PDB Molecule:e3 ubiquitin-protein ligase itchy homolog;
PDBTitle: structural basis for the interaction between itch prr and beta-pix
52c3a0aB_
not modelled 5.2 50
PDB header:structural protein
Chain: B: PDB Molecule:collagen-like peptide;
PDBTitle: structure of (ppg)4-opg-(ppg)4, monoclinic, twinned crystal

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Transmembrane helix prediction 

Transmembrane helices have been predicted in your sequence to adopt the topology shown below