Phyre Home Retrieve Phyre Job Id
Emailmdejesus@rockefeller.edu
DescriptionRVBD2999_(lppY)_3357612_3358577
DateThu Aug 8 16:20:16 BST 2019
Unique Job ID4ec4b0c564f8d22a
SequenceMAGAKHAGRI ... Download FASTA
Job Typenormal
Job Expiry

Summary 

Top model
Image coloured by rainbow N → C terminus
Model dimensions (Å):X:62.435 Y:55.052 Z:35.146
Model (left) based on template c6avhA_
Top template information
PDB header:ligase, plant protein
Chain: A: PDB Molecule:gh3.15 acyl acid amido synthetase;
PDBTitle: gh3.15 acyl acid amido synthetase
Confidence and coverage
Confidence: 81.4% Coverage: 31%
100 residues ( 31% of your sequence) have been modelled with 81.4% confidence by the single highest scoring template.
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Sequence analysis 

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Secondary structure and disorder prediction [Show] 

Domain analysis [Show] 

Detailed template information [Hide] 

 

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Template Alignment Coverage3D Model Confidence
% i.d. Template Information
1c6avhA_



81.4 15
PDB header:ligase, plant protein
Chain: A: PDB Molecule:gh3.15 acyl acid amido synthetase;
PDBTitle: gh3.15 acyl acid amido synthetase
2c4ewvB_



70.6 13
PDB header:ligase
Chain: B: PDB Molecule:4-substituted benzoates-glutamate ligase gh3.12;
PDBTitle: crystal structure of gh3.12 in complex with ampcpp
3d2qmwa2



65.6 8
Fold:Ferredoxin-like
Superfamily:ACT-like
Family:Phenylalanine metabolism regulatory domain
4d1ddwa_



63.4 6
Fold:PH domain-like barrel
Superfamily:PH domain-like
Family:Enabled/VASP homology 1 domain (EVH1 domain)
5d1xoda1



61.0 22
Fold:PH domain-like barrel
Superfamily:PH domain-like
Family:Enabled/VASP homology 1 domain (EVH1 domain)
6c3o1lB_



60.6 21
PDB header:hydrolase
Chain: B: PDB Molecule:formyltetrahydrofolate deformylase;
PDBTitle: crystal structure of a formyltetrahydrofolate deformylase (pspto_4314)2 from pseudomonas syringae pv. tomato str. dc3000 at 2.20 a resolution
7c4eplA_



58.1 15
PDB header:ligase
Chain: A: PDB Molecule:jasmonic acid-amido synthetase jar1;
PDBTitle: crystal structure of arabidopsis thaliana gh3.11 (jar1) in complex2 with ja-ile
8d1i7aa_



56.3 8
Fold:PH domain-like barrel
Superfamily:PH domain-like
Family:Enabled/VASP homology 1 domain (EVH1 domain)
9c2mdaB_



55.6 14
PDB header:oxidoreductase
Chain: B: PDB Molecule:tyrosine 3-monooxygenase;
PDBTitle: the solution structure of the regulatory domain of tyrosine2 hydroxylase
10c5l0lB_



47.8 35
PDB header:unknown function
Chain: B: PDB Molecule:uncharacterized protein;
PDBTitle: crystal structure of uncharacterized protein lpg0439
11c2im5C_



47.4 15
PDB header:transferase
Chain: C: PDB Molecule:nicotinate phosphoribosyltransferase;
PDBTitle: crystal structure of nicotinate phosphoribosyltransferase from2 porphyromonas gingivalis
12c3do6B_



41.9 14
PDB header:ligase
Chain: B: PDB Molecule:formate--tetrahydrofolate ligase;
PDBTitle: crystal structure of putative formyltetrahydrofolate synthetase2 (tm1766) from thermotoga maritima at 1.85 a resolution
13d1evha_



41.8 19
Fold:PH domain-like barrel
Superfamily:PH domain-like
Family:Enabled/VASP homology 1 domain (EVH1 domain)
14c1zhvA_



40.6 29
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:hypothetical protein atu0741;
PDBTitle: x-ray crystal structure protein atu0741 from agobacterium tumefaciens.2 northeast structural genomics consortium target atr8.
15d2dfaa1



39.3 20
Fold:7-stranded beta/alpha barrel
Superfamily:Glycoside hydrolase/deacetylase
Family:LamB/YcsF-like
16c4j38A_



36.8 26
PDB header:immune system
Chain: A: PDB Molecule:outer surface protein e;
PDBTitle: structure of borrelia burgdorferi outer surface protein e in complex2 with factor h domains 19-20
17d1nh8a2



34.4 11
Fold:Ferredoxin-like
Superfamily:GlnB-like
Family:ATP phosphoribosyltransferase (ATP-PRTase, HisG), regulatory C-terminal domain
18c2ivfB_



33.9 17
PDB header:oxidoreductase
Chain: B: PDB Molecule:ethylbenzene dehydrogenase beta-subunit;
PDBTitle: ethylbenzene dehydrogenase from aromatoleum aromaticum
19d1qc6a_



33.0 17
Fold:PH domain-like barrel
Superfamily:PH domain-like
Family:Enabled/VASP homology 1 domain (EVH1 domain)
20d1pdoa_



32.3 14
Fold:PTS system fructose IIA component-like
Superfamily:PTS system fructose IIA component-like
Family:EIIA-man component-like
21c3iprC_



not modelled 30.6 11
PDB header:transferase
Chain: C: PDB Molecule:pts system, iia component;
PDBTitle: crystal structure of the enterococcus faecalis gluconate2 specific eiia phosphotransferase system component
22c2m3aA_



not modelled 30.5 35
PDB header:dna binding protein
Chain: A: PDB Molecule:protein knl-2;
PDBTitle: nmr solution structure of a myb-like dna binding domain of knl-2 from2 c. elegans
23c5td7A_



not modelled 29.2 16
PDB header:hydrolase
Chain: A: PDB Molecule:zgc:55652;
PDBTitle: crystal structure of histone deacetylase 10
24d1qz9a_



not modelled 28.8 14
Fold:PLP-dependent transferase-like
Superfamily:PLP-dependent transferases
Family:Cystathionine synthase-like
25c4yubB_



not modelled 28.3 19
PDB header:ligase
Chain: B: PDB Molecule:nicotinate phosphoribosyltransferase;
PDBTitle: crystal structure of human nicotinic acid phosphoribosyltransferase
26d1y7pa1



not modelled 27.9 15
Fold:Flavodoxin-like
Superfamily:CheY-like
Family:AF1403 C-terminal domain-like
27c3a5vA_



not modelled 27.3 21
PDB header:hydrolase
Chain: A: PDB Molecule:alpha-galactosidase;
PDBTitle: crystal structure of alpha-galactosidase i from mortierella vinacea
28c2jp2A_



not modelled 26.1 24
PDB header:signaling protein
Chain: A: PDB Molecule:sprouty-related, evh1 domain-containing protein
PDBTitle: solution structure and resonance assignment of the n-2 terminal evh1 domain from the human spred2 protein3 (sprouty-related protein with evh1 domain isoform 2)
29d1iuga_



not modelled 26.1 17
Fold:PLP-dependent transferase-like
Superfamily:PLP-dependent transferases
Family:Cystathionine synthase-like
30c5a4jC_



not modelled 25.3 23
PDB header:ligase
Chain: C: PDB Molecule:formate--tetrahydrofolate ligase;
PDBTitle: crystal structure of fthfs1 from t.acetoxydans re1
31c3lrmB_



not modelled 24.1 26
PDB header:hydrolase
Chain: B: PDB Molecule:alpha-galactosidase 1;
PDBTitle: structure of alfa-galactosidase from saccharomyces cerevisiae with2 raffinose
32c6cxdA_



not modelled 24.1 16
PDB header:hydrolase
Chain: A: PDB Molecule:peptidase b;
PDBTitle: crystal structure of peptidase b from yersinia pestis co92 at 2.75 a2 resolution
33d1xmka1



not modelled 23.6 19
Fold:DNA/RNA-binding 3-helical bundle
Superfamily:"Winged helix" DNA-binding domain
Family:Z-DNA binding domain
34d2ed6a1



not modelled 23.2 17
Fold:WSSV envelope protein-like
Superfamily:WSSV envelope protein-like
Family:WSSV envelope protein-like
35c5az0A_



not modelled 23.2 24
PDB header:oxidoreductase
Chain: A: PDB Molecule:uncharacterized protein;
PDBTitle: crystal structure of aldo-keto reductase (akr2e5) of the silkworm,2 bombyx mori
36d1h70a_



not modelled 22.6 5
Fold:Pentein, beta/alpha-propeller
Superfamily:Pentein
Family:Dimethylarginine dimethylaminohydrolase DDAH
37d1m6sa_



not modelled 22.4 10
Fold:PLP-dependent transferase-like
Superfamily:PLP-dependent transferases
Family:AAT-like
38c5xlmB_



not modelled 21.9 20
PDB header:transferase
Chain: B: PDB Molecule:serine/threonine-protein kinase pkni;
PDBTitle: monomer form of m.tuberculosis pkni sensor domain
39d1o7fa1



not modelled 19.1 10
Fold:DNA/RNA-binding 3-helical bundle
Superfamily:"Winged helix" DNA-binding domain
Family:DEP domain
40d1m32a_



not modelled 19.1 19
Fold:PLP-dependent transferase-like
Superfamily:PLP-dependent transferases
Family:Cystathionine synthase-like
41c3lutA_



not modelled 18.9 33
PDB header:membrane protein
Chain: A: PDB Molecule:voltage-gated potassium channel subunit beta-2;
PDBTitle: a structural model for the full-length shaker potassium channel kv1.2
42d3eaua1



not modelled 18.9 33
Fold:TIM beta/alpha-barrel
Superfamily:NAD(P)-linked oxidoreductase
Family:Aldo-keto reductases (NADP)
43c2nyiB_



not modelled 18.7 23
PDB header:structural genomics, unknown function
Chain: B: PDB Molecule:unknown protein;
PDBTitle: crystal structure of an unknown protein from galdieria sulphuraria
44c3e9kA_



not modelled 18.4 16
PDB header:hydrolase
Chain: A: PDB Molecule:kynureninase;
PDBTitle: crystal structure of homo sapiens kynureninase-3-hydroxyhippuric acid2 inhibitor complex
45c4maiA_



not modelled 17.7 28
PDB header:oxidoreductase
Chain: A: PDB Molecule:aa11 lytic polysaccharide monooxygenase;
PDBTitle: structure of aspergillus oryzae aa11 lytic polysaccharide2 monooxygenase with cu(i)
46d1uasa2



not modelled 17.4 26
Fold:TIM beta/alpha-barrel
Superfamily:(Trans)glycosidases
Family:Amylase, catalytic domain
47c4yddF_



not modelled 17.4 19
PDB header:oxidoreductase
Chain: F: PDB Molecule:dmso reductase family type ii enzyme, iron-sulfur subunit;
PDBTitle: crystal structure of the perchlorate reductase pcrab from azospira2 suillum ps
48c6czaB_



not modelled 17.1 22
PDB header:oxidoreductase
Chain: B: PDB Molecule:4fe-4s ferredoxin, iron-sulfur binding domain protein;
PDBTitle: the arsenate respiratory reductase (arr) complex from shewanella sp.2 ana-3 bound to phosphate
49c1bplA_



not modelled 17.0 20
PDB header:glycosyltransferase
Chain: A: PDB Molecule:alpha-1,4-glucan-4-glucanohydrolase;
PDBTitle: glycosyltransferase
50c4bjuB_



not modelled 17.0 25
PDB header:isomerase
Chain: B: PDB Molecule:n-acetylglucosamine-phosphate mutase;
PDBTitle: genetic and structural validation of aspergillus fumigatus2 n-acetylphosphoglucosamine mutase as an antifungal target
51d1a9xa4



not modelled 16.8 11
Fold:PreATP-grasp domain
Superfamily:PreATP-grasp domain
Family:BC N-terminal domain-like
52c5xgzA_



not modelled 16.8 21
PDB header:hydrolase
Chain: A: PDB Molecule:beta-glycosidase;
PDBTitle: metagenomic glucose-tolerant glycosidase
53c2j75A_



not modelled 16.7 19
PDB header:hydrolase
Chain: A: PDB Molecule:beta-glucosidase a;
PDBTitle: beta-glucosidase from thermotoga maritima in complex with2 noeuromycin
54d1ru8a_



not modelled 16.5 12
Fold:Adenine nucleotide alpha hydrolase-like
Superfamily:Adenine nucleotide alpha hydrolases-like
Family:N-type ATP pyrophosphatases
55d1r46a2



not modelled 16.5 17
Fold:TIM beta/alpha-barrel
Superfamily:(Trans)glycosidases
Family:Amylase, catalytic domain
56c2csuB_



not modelled 16.4 13
PDB header:structural genomics, unknown function
Chain: B: PDB Molecule:457aa long hypothetical protein;
PDBTitle: crystal structure of ph0766 from pyrococcus horikoshii ot3
57c6fmgC_



not modelled 16.3 11
PDB header:transferase
Chain: C: PDB Molecule:pts system mannose-specific transporter subunit iiab;
PDBTitle: structure of the mannose transporter iia domain from streptococcus2 pneumoniae
58c4b2gB_



not modelled 16.2 21
PDB header:signaling protein
Chain: B: PDB Molecule:gh3-1 auxin conjugating enzyme;
PDBTitle: crystal structure of an indole-3-acetic acid amido synthase from vitis2 vinifera involved in auxin homeostasis
59c3nx3A_



not modelled 16.1 15
PDB header:transferase
Chain: A: PDB Molecule:acetylornithine aminotransferase;
PDBTitle: crystal structure of acetylornithine aminotransferase (argd) from2 campylobacter jejuni
60c3w7bB_



not modelled 15.6 28
PDB header:hydrolase
Chain: B: PDB Molecule:formyltetrahydrofolate deformylase;
PDBTitle: crystal structure of formyltetrahydrofolate deformylase from thermus2 thermophilus hb8
61c1ti2F_



not modelled 15.2 13
PDB header:oxidoreductase
Chain: F: PDB Molecule:pyrogallol hydroxytransferase small subunit;
PDBTitle: crystal structure of pyrogallol-phloroglucinol transhydroxylase from2 pelobacter acidigallici
62c2lnaA_



not modelled 15.0 17
PDB header:hydrolase
Chain: A: PDB Molecule:afg3-like protein 2;
PDBTitle: solution nmr structure of the mitochondrial inner membrane domain2 (residues 164-251), ftsh_ext, from the paraplegin-like protein afg3l23 from homo sapiens, northeast structural genomics consortium target4 hr6741a
63c4e4jJ_



not modelled 14.9 28
PDB header:hydrolase
Chain: J: PDB Molecule:arginine deiminase;
PDBTitle: crystal structure of arginine deiminase from mycoplasma penetrans
64c3hqtB_



not modelled 14.9 3
PDB header:transferase
Chain: B: PDB Molecule:cai-1 autoinducer synthase;
PDBTitle: plp-dependent acyl-coa transferase cqsa
65c4hl7A_



not modelled 14.8 22
PDB header:transferase
Chain: A: PDB Molecule:nicotinate phosphoribosyltransferase;
PDBTitle: crystal structure of nicotinate phosphoribosyltransferase (target2 nysgr-026035) from vibrio cholerae
66d1z7da1



not modelled 14.6 8
Fold:PLP-dependent transferase-like
Superfamily:PLP-dependent transferases
Family:GABA-aminotransferase-like
67c1ybeA_



not modelled 14.5 11
PDB header:transferase
Chain: A: PDB Molecule:nicotinate phosphoribosyltransferase;
PDBTitle: crystal structure of a nicotinate phosphoribosyltransferase
68c3ke3A_



not modelled 14.3 13
PDB header:transferase
Chain: A: PDB Molecule:putative serine-pyruvate aminotransferase;
PDBTitle: crystal structure of putative serine-pyruvate aminotransferase2 (yp_263484.1) from psychrobacter arcticum 273-4 at 2.20 a resolution
69c4xi7A_



not modelled 14.3 26
PDB header:ligase
Chain: A: PDB Molecule:e3 ubiquitin-protein ligase mib1;
PDBTitle: crystal structure of the mzm-rep domains of mind bomb 1 in complex2 with jagged1 n-box peptide
70c6ierA_



not modelled 14.1 18
PDB header:hydrolase
Chain: A: PDB Molecule:beta-glucosidase 1317;
PDBTitle: apo structure of a beta-glucosidase 1317
71d1ktba2



not modelled 13.8 17
Fold:TIM beta/alpha-barrel
Superfamily:(Trans)glycosidases
Family:Amylase, catalytic domain
72d2ns0a1



not modelled 13.7 30
Fold:DNA/RNA-binding 3-helical bundle
Superfamily:"Winged helix" DNA-binding domain
Family:RHA1 ro06458-like
73c2wztA_



not modelled 13.7 19
PDB header:oxidoreductase
Chain: A: PDB Molecule:aldo-keto reductase;
PDBTitle: crystal structure of a mycobacterium aldo-keto reductase in its apo2 and liganded form
74c2pfuA_



not modelled 13.6 5
PDB header:transport protein
Chain: A: PDB Molecule:biopolymer transport exbd protein;
PDBTitle: nmr strcuture determination of the periplasmic domain of exbd from2 e.coli
75d2b8ea1



not modelled 13.5 11
Fold:HAD-like
Superfamily:HAD-like
Family:Meta-cation ATPase, catalytic domain P
76c5yj7C_



not modelled 13.5 21
PDB header:hydrolase
Chain: C: PDB Molecule:glycoside hydrolase;
PDBTitle: structural insight into the beta-gh1 glucosidase bgln1 from oleaginous2 microalgae nannochloropsis
77c1yirA_



not modelled 13.3 15
PDB header:transferase
Chain: A: PDB Molecule:nicotinate phosphoribosyltransferase 2;
PDBTitle: crystal structure of a nicotinate phosphoribosyltransferase
78d3beda1



not modelled 12.7 11
Fold:PTS system fructose IIA component-like
Superfamily:PTS system fructose IIA component-like
Family:EIIA-man component-like
79c2hzpA_



not modelled 12.3 16
PDB header:hydrolase
Chain: A: PDB Molecule:kynureninase;
PDBTitle: crystal structure of homo sapiens kynureninase
80c5viuB_



not modelled 12.2 8
PDB header:transferase
Chain: B: PDB Molecule:acetylornithine aminotransferase;
PDBTitle: crystal structure of acetylornithine aminotransferase from2 elizabethkingia anophelis
81c4nzjA_



not modelled 12.0 21
PDB header:hydrolase
Chain: A: PDB Molecule:putative alpha-galactosidase;
PDBTitle: crystal structure of a putative alpha-galactosidase (bf1418) from2 bacteroides fragilis nctc 9343 at 1.57 a resolution
82c2ro0A_



not modelled 11.9 42
PDB header:transferase
Chain: A: PDB Molecule:histone acetyltransferase esa1;
PDBTitle: solution structure of the knotted tudor domain of the yeast2 histone acetyltransferase, esa1
83c4eclA_



not modelled 11.7 22
PDB header:isomerase
Chain: A: PDB Molecule:serine racemase;
PDBTitle: crystal structure of the cytoplasmic domain of vancomycin resistance2 serine racemase vantg
84c6eacC_



not modelled 11.7 29
PDB header:transferase
Chain: C: PDB Molecule:selo;
PDBTitle: pseudomonas syringae selo
85c1vraB_



not modelled 11.7 21
PDB header:transferase
Chain: B: PDB Molecule:arginine biosynthesis bifunctional protein argj;
PDBTitle: crystal structure of arginine biosynthesis bifunctional protein argj2 (10175521) from bacillus halodurans at 2.00 a resolution
86d1xw8a_



not modelled 11.6 17
Fold:7-stranded beta/alpha barrel
Superfamily:Glycoside hydrolase/deacetylase
Family:LamB/YcsF-like
87c3n0vD_



not modelled 11.6 21
PDB header:hydrolase
Chain: D: PDB Molecule:formyltetrahydrofolate deformylase;
PDBTitle: crystal structure of a formyltetrahydrofolate deformylase (pp_0327)2 from pseudomonas putida kt2440 at 2.25 a resolution
88d1a1va2



not modelled 11.6 15
Fold:P-loop containing nucleoside triphosphate hydrolases
Superfamily:P-loop containing nucleoside triphosphate hydrolases
Family:RNA helicase
89c2dr1A_



not modelled 11.4 21
PDB header:transferase
Chain: A: PDB Molecule:386aa long hypothetical serine aminotransferase;
PDBTitle: crystal structure of the ph1308 protein from pyrococcus horikoshii ot3
90c2ifsA_



not modelled 11.4 10
PDB header:signaling protein
Chain: A: PDB Molecule:wiskott-aldrich syndrome protien interacting protein and
PDBTitle: structure of the n-wasp evh1 domain in complex with an extended wip2 peptide
91c3lv2A_



not modelled 10.9 9
PDB header:transferase
Chain: A: PDB Molecule:adenosylmethionine-8-amino-7-oxononanoate aminotransferase;
PDBTitle: crystal structure of mycobacterium tuberculosis 7,8-diaminopelargonic2 acid synthase in complex with substrate analog sinefungin
92d1szna2



not modelled 10.9 21
Fold:TIM beta/alpha-barrel
Superfamily:(Trans)glycosidases
Family:Amylase, catalytic domain
93d1yksa2



not modelled 10.5 13
Fold:P-loop containing nucleoside triphosphate hydrolases
Superfamily:P-loop containing nucleoside triphosphate hydrolases
Family:RNA helicase
94c2nvaH_



not modelled 10.4 16
PDB header:lyase
Chain: H: PDB Molecule:arginine decarboxylase, a207r protein;
PDBTitle: the x-ray crystal structure of the paramecium bursaria chlorella virus2 arginine decarboxylase bound to agmatine
95c1z7dE_



not modelled 10.4 10
PDB header:transferase
Chain: E: PDB Molecule:ornithine aminotransferase;
PDBTitle: ornithine aminotransferase py00104 from plasmodium yoelii
96c3rmuD_



not modelled 10.2 4
PDB header:isomerase
Chain: D: PDB Molecule:methylmalonyl-coa epimerase, mitochondrial;
PDBTitle: crystal structure of human methylmalonyl-coa epimerase, mcee
97d1i2ha_



not modelled 10.2 6
Fold:PH domain-like barrel
Superfamily:PH domain-like
Family:Enabled/VASP homology 1 domain (EVH1 domain)
98d1knwa2



not modelled 10.2 10
Fold:TIM beta/alpha-barrel
Superfamily:PLP-binding barrel
Family:Alanine racemase-like, N-terminal domain
99d1yira1



not modelled 10.1 19
Fold:TIM beta/alpha-barrel
Superfamily:Nicotinate/Quinolinate PRTase C-terminal domain-like
Family:Monomeric nicotinate phosphoribosyltransferase C-terminal domain

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