Phyre Home Retrieve Phyre Job Id
Emailmdejesus@rockefeller.edu
DescriptionRVBD3005c_(-)_3363703_3364542
DateThu Aug 8 16:20:17 BST 2019
Unique Job IDe7a01146d476c4bd
SequenceVTSSNDSHWQ ... Download FASTA
Job Typenormal
Job Expiry

Summary 

Top model
Image coloured by rainbow N → C terminus
Model dimensions (Å):X:46.887 Y:37.462 Z:64.745
Model (left) based on template d2bs2c1
Top template information
Fold:Heme-binding four-helical bundle
Superfamily:Fumarate reductase respiratory complex transmembrane subunits
Family:Fumarate reductase respiratory complex cytochrome b subunit, FrdC
Confidence and coverage
Confidence: 55.0% Coverage: 65%
180 residues ( 65% of your sequence) have been modelled with 55.0% confidence by the single highest scoring template.
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Sequence analysis 

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Secondary structure and disorder prediction [Show] 

Domain analysis [Show] 

Detailed template information [Hide] 

 

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Template Alignment Coverage3D Model Confidence
% i.d. Template Information
1d2bs2c1



55.0 13
Fold:Heme-binding four-helical bundle
Superfamily:Fumarate reductase respiratory complex transmembrane subunits
Family:Fumarate reductase respiratory complex cytochrome b subunit, FrdC
2c5gjqZ_



47.9 16
PDB header:hydrolase
Chain: Z: PDB Molecule:26s proteasome non-atpase regulatory subunit 2;
PDBTitle: structure of the human 26s proteasome bound to usp14-ubal
3c6hwhB_



34.4 15
PDB header:electron transport
Chain: B: PDB Molecule:ubiquinol-cytochrome c reductase iron-sulfur subunit;
PDBTitle: structure of a functional obligate respiratory supercomplex from2 mycobacterium smegmatis
4c5khrA_



34.3 33
PDB header:cell cycle
Chain: A: PDB Molecule:anaphase-promoting complex subunit 1;
PDBTitle: model of human anaphase-promoting complex/cyclosome complex (apc152 deletion mutant) in complex with the e2 ube2c/ubch10 poised for3 ubiquitin ligation to substrate (apc/c-cdc20-substrate-ube2c)
5c5a31A_



28.3 37
PDB header:cell cycle
Chain: A: PDB Molecule:anaphase-promoting complex subunit 1;
PDBTitle: structure of the human apc-cdh1-hsl1-ubch10 complex.
6c4ui9A_



27.5 37
PDB header:cell cycle
Chain: A: PDB Molecule:anaphase-promoting complex subunit 1;
PDBTitle: atomic structure of the human anaphase-promoting complex
7c2lzsE_



26.7 21
PDB header:protein transport
Chain: E: PDB Molecule:sec-independent protein translocase protein tata;
PDBTitle: tata oligomer
8c5xj6A_



26.4 19
PDB header:transferase
Chain: A: PDB Molecule:glycerol-3-phosphate acyltransferase;
PDBTitle: crystal structure of plsy (ygih), an integral membrane glycerol 3-2 phosphate acyltransferase - the glycerol 3-phosphate form
9c2mi2A_



25.0 29
PDB header:transport protein
Chain: A: PDB Molecule:sec-independent protein translocase protein tatb;
PDBTitle: solution structure of the e. coli tatb protein in dpc micelles
10c5khuA_



24.7 37
PDB header:cell cycle
Chain: A: PDB Molecule:anaphase-promoting complex subunit 1;
PDBTitle: model of human anaphase-promoting complex/cyclosome (apc15 deletion2 mutant), in complex with the mitotic checkpoint complex (apc/c-cdc20-3 mcc) based on cryo em data at 4.8 angstrom resolution
11c5awwG_



23.1 19
PDB header:protein transport/immune system
Chain: G: PDB Molecule:putative preprotein translocase, secg subunit;
PDBTitle: precise resting state of thermus thermophilus secyeg
12c3vrbG_



21.2 18
PDB header:oxidoreductase/oxidoreductase inhibitor
Chain: G: PDB Molecule:cytochrome b-large subunit;
PDBTitle: mitochondrial rhodoquinol-fumarate reductase from the parasitic2 nematode ascaris suum with the specific inhibitor flutolanil and3 substrate fumarate
13c5l9uA_



20.9 35
PDB header:signaling protein
Chain: A: PDB Molecule:anaphase-promoting complex subunit 1;
PDBTitle: model of human anaphase-promoting complex/cyclosome (apc/c-cdh1) with2 a cross linked ubiquitin variant-substrate-ube2c (ubch10) complex3 representing key features of multiubiquitination
14c4ezdB_



20.2 20
PDB header:transport protein
Chain: B: PDB Molecule:urea transporter 1;
PDBTitle: crystal structure of the ut-b urea transporter from bos taurus bound2 to selenourea
15c6iu3A_



19.7 16
PDB header:metal transport
Chain: A: PDB Molecule:vit1;
PDBTitle: crystal structure of iron transporter vit1 with zinc ions
16c5xmjG_



19.2 13
PDB header:electron transport
Chain: G: PDB Molecule:fumarate reductase respiratory complex;
PDBTitle: crystal structure of quinol:fumarate reductase from desulfovibrio2 gigas
17c2lcnA_



19.1 31
PDB header:membrane protein
Chain: A: PDB Molecule:walp19-p10 peptide;
PDBTitle: 1h and 15n assignments of walp19-p10 peptide in sds micelles
18d1jvra_



15.3 21
Fold:Retroviral matrix proteins
Superfamily:Retroviral matrix proteins
Family:HTLV-II matrix protein
19c2lcoA_



14.7 31
PDB header:membrane protein
Chain: A: PDB Molecule:walp19-p8 peptide;
PDBTitle: 1h and 15n assignments of walp19-p8 peptide in sds micelles
20c2l16A_



12.7 17
PDB header:protein transport
Chain: A: PDB Molecule:sec-independent protein translocase protein tatad;
PDBTitle: solution structure of bacillus subtilits tatad protein in dpc micelles
21c2k9yB_



not modelled 12.3 29
PDB header:transferase
Chain: B: PDB Molecule:ephrin type-a receptor 2;
PDBTitle: epha2 dimeric structure in the lipidic bicelle at ph 5.0
22c2k9yA_



not modelled 11.5 29
PDB header:transferase
Chain: A: PDB Molecule:ephrin type-a receptor 2;
PDBTitle: epha2 dimeric structure in the lipidic bicelle at ph 5.0
23c3k3gA_



not modelled 11.2 24
PDB header:transport protein
Chain: A: PDB Molecule:urea transporter;
PDBTitle: crystal structure of the urea transporter from desulfovibrio vulgaris2 bound to 1,3-dimethylurea
24c5sxpF_



not modelled 7.7 47
PDB header:signaling protein/ligase
Chain: F: PDB Molecule:e3 ubiquitin-protein ligase itchy homolog;
PDBTitle: structural basis for the interaction between itch prr and beta-pix
25c6ffvA_



not modelled 7.3 11
PDB header:transport protein
Chain: A: PDB Molecule:btum;
PDBTitle: the crystal structure of btum cobalamin transporter
26c5l6nI_



not modelled 7.2 27
PDB header:hydrolase
Chain: I: PDB Molecule:thrombin inhibitor madanin 1;
PDBTitle: disulfated madanin-thrombin complex
27c5ldwc_



not modelled 6.9 11
PDB header:oxidoreductase
Chain: C: PDB Molecule:nadh dehydrogenase [ubiquinone] iron-sulfur protein 3,
PDBTitle: structure of mammalian respiratory complex i, class1
28c5lc5c_



not modelled 6.9 11
PDB header:oxidoreductase
Chain: C: PDB Molecule:nadh dehydrogenase [ubiquinone] iron-sulfur protein 3,
PDBTitle: structure of mammalian respiratory complex i, class2
29c2miiA_



not modelled 6.9 12
PDB header:protein binding
Chain: A: PDB Molecule:penicillin-binding protein activator lpob;
PDBTitle: nmr structure of e. coli lpob
30d3boea1



not modelled 6.9 33
Fold:CdCA1 repeat-like
Superfamily:CdCA1 repeat-like
Family:CdCA1 repeat-like
31d1xm5a_



not modelled 6.3 36
Fold:Zincin-like
Superfamily:Metalloproteases ("zincins"), catalytic domain
Family:Predicted metal-dependent hydrolase
32c3rkoK_



not modelled 6.2 23
PDB header:oxidoreductase
Chain: K: PDB Molecule:nadh-quinone oxidoreductase subunit k;
PDBTitle: crystal structure of the membrane domain of respiratory complex i from2 e. coli at 3.0 angstrom resolution
33c5sxpG_



not modelled 6.2 44
PDB header:signaling protein/ligase
Chain: G: PDB Molecule:e3 ubiquitin-protein ligase itchy homolog;
PDBTitle: structural basis for the interaction between itch prr and beta-pix
34c2cpbA_



not modelled 6.0 11
PDB header:viral protein
Chain: A: PDB Molecule:m13 major coat protein;
PDBTitle: solution nmr structures of the major coat protein of2 filamentous bacteriophage m13 solubilized in3 dodecylphosphocholine micelles, 25 lowest energy structures
35c3ipkA_



not modelled 5.8 7
PDB header:cell adhesion
Chain: A: PDB Molecule:agi/ii;
PDBTitle: crystal structure of a3vp1 of agi/ii of streptococcus mutans
36c1xaxA_



not modelled 5.8 36
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:hypothetical upf0054 protein hi0004;
PDBTitle: nmr structure of hi0004, a putative essential gene product2 from haemophilus influenzae
37c4heaK_



not modelled 5.5 18
PDB header:oxidoreductase
Chain: K: PDB Molecule:nadh-quinone oxidoreductase subunit 11;
PDBTitle: crystal structure of the entire respiratory complex i from thermus2 thermophilus
38c5azcA_



not modelled 5.4 16
PDB header:transferase
Chain: A: PDB Molecule:prolipoprotein diacylglyceryl transferase;
PDBTitle: crystal structure of escherichia coli lgt in complex with2 phosphatidylglycerol
39c4gvsA_



not modelled 5.4 22
PDB header:hydrolase
Chain: A: PDB Molecule:methenyltetrahydromethanopterin cyclohydrolase;
PDBTitle: x-ray structure of the archaeoglobus fulgidus methenyl-2 tetrahydromethanopterin cyclohydrolase in complex with n5-formyl-3 tetrahydromethanopterin
40c4cdiC_



not modelled 5.3 23
PDB header:membrane protein
Chain: C: PDB Molecule:predicted protein;
PDBTitle: crystal structure of acrb-acrz complex
41c4cz8A_



not modelled 5.3 6
PDB header:membrane protein
Chain: A: PDB Molecule:na+/h+ antiporter, putative;
PDBTitle: structure of the sodium proton antiporter panhap from2 pyrococcus abyssii at ph 8.
42c5z62N_



not modelled 5.3 29
PDB header:electron transport
Chain: N: PDB Molecule:cytochrome c oxidase subunit ndufa4;
PDBTitle: structure of human cytochrome c oxidase
43c6cfwI_



not modelled 5.1 27
PDB header:membrane protein
Chain: I: PDB Molecule:mbh subunit;
PDBTitle: cryoem structure of a respiratory membrane-bound hydrogenase

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