Phyre Home Retrieve Phyre Job Id
Emailmdejesus@rockefeller.edu
DescriptionRVBD3008_(-)_3366654_3367277
DateThu Aug 8 16:20:17 BST 2019
Unique Job ID60a3d0c456d25a86
SequenceMLTVVAVIGI ... Download FASTA
Job Typenormal
Job Expiry

Summary 

Top model
Image coloured by rainbow N → C terminus
Model dimensions (Å):X:22.189 Y:24.816 Z:14.995
Model (left) based on template c5t42A_
Top template information
PDB header:viral protein
Chain: A: PDB Molecule:envelope glycoprotein;
PDBTitle: structure of the ebola virus envelope protein mper/tm domain and its2 interaction with the fusion loop explains their fusion activity
Confidence and coverage
Confidence: 41.6% Coverage: 9%
19 residues ( 9% of your sequence) have been modelled with 41.6% confidence by the single highest scoring template.
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Sequence analysis 

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Secondary structure and disorder prediction [Show] 

Domain analysis [Show] 

Detailed template information [Hide] 

 

#
Template Alignment Coverage3D Model Confidence
% i.d. Template Information
1c5t42A_
41.6 58
PDB header:viral protein
Chain: A: PDB Molecule:envelope glycoprotein;
PDBTitle: structure of the ebola virus envelope protein mper/tm domain and its2 interaction with the fusion loop explains their fusion activity
2c4csoD_
37.7 30
PDB header:transcription
Chain: D: PDB Molecule:orfy protein, transcription factor;
PDBTitle: the structure of orfy from thermoproteus tenax
3c2ckcA_
34.3 22
PDB header:hydrolase
Chain: A: PDB Molecule:chromodomain-helicase-dna-binding protein 7;
PDBTitle: solution structures of the brk domains of the human chromo2 helicase domain 7 and 8, reveals structural similarity3 with gyf domain suggesting a role in protein interaction
4d2ckca1
34.3 22
Fold:GYF/BRK domain-like
Superfamily:BRK domain-like
Family:BRK domain-like
5c3nj2B_
30.2 23
PDB header:unknown function
Chain: B: PDB Molecule:duf269-containing protein;
PDBTitle: crystal structure of cce_0566 from the cyanobacterium cyanothece2 51142, a protein associated with nitrogen fixation from the duf2693 family
6d2v0ea1
26.6 31
Fold:GYF/BRK domain-like
Superfamily:BRK domain-like
Family:BRK domain-like
7d2ckaa1
23.2 38
Fold:GYF/BRK domain-like
Superfamily:BRK domain-like
Family:BRK domain-like
8c2ckaA_
23.2 38
PDB header:hydrolase
Chain: A: PDB Molecule:chromodomain-helicase-dna-binding protein 8;
PDBTitle: solution structures of the brk domains of the human chromo2 helicase domain 7 and 8, reveals structural similarity3 with gyf domain suggesting a role in protein interaction
9d2v0fa1
15.3 29
Fold:GYF/BRK domain-like
Superfamily:BRK domain-like
Family:BRK domain-like
10d1pcfa_
13.2 16
Fold:ssDNA-binding transcriptional regulator domain
Superfamily:ssDNA-binding transcriptional regulator domain
Family:Transcriptional coactivator PC4 C-terminal domain
11d2dl6a1
12.8 38
Fold:GYF/BRK domain-like
Superfamily:BRK domain-like
Family:BRK domain-like
12c4boeA_
11.4 48
PDB header:cholesterol binding protein
Chain: A: PDB Molecule:japanin;
PDBTitle: japanin from rhipicephalus appendiculatus bound to cholesterol:2 tetragonal crystal form
13c3hefB_
10.9 33
PDB header:viral protein
Chain: B: PDB Molecule:gene 1 protein;
PDBTitle: crystal structure of the bacteriophage sf6 terminase small subunit
14d2pila_
10.8 45
Fold:Pili subunits
Superfamily:Pili subunits
Family:Pilin
15c3sokB_
10.1 64
PDB header:cell adhesion
Chain: B: PDB Molecule:fimbrial protein;
PDBTitle: dichelobacter nodosus pilin fima
16c4aghA_
9.8 11
PDB header:transcription
Chain: A: PDB Molecule:mosub1, transcription cofactor;
PDBTitle: structural features of ssdna binding protein mosub1 from magnaporthe2 oryzae
17c6gv9K_
9.1 36
PDB header:protein fibril
Chain: K: PDB Molecule:prepilin peptidase-dependent protein d;
PDBTitle: structure of the type iv pilus from enterohemorrhagic escherichia coli2 (ehec)
18c6qhgB_
8.3 71
PDB header:viral protein
Chain: B: PDB Molecule:polymerase;
PDBTitle: structure of the cap-binding domain of rift valley fever virus l2 protein
19d1oqwa_
8.1 64
Fold:Pili subunits
Superfamily:Pili subunits
Family:Pilin
20c5a98A_
7.6 25
PDB header:viral protein
Chain: A: PDB Molecule:polyhedrin;
PDBTitle: crystal structure of trichoplusia ni cpv15 polyhedra
21c5lskD_
not modelled 7.5 37
PDB header:cell cycle
Chain: D: PDB Molecule:kinetochore-associated protein dsn1 homolog;
PDBTitle: crystal structure of the human kinetochore mis12-cenp-c complex
22c1r7gA_
not modelled 7.5 56
PDB header:membrane protein
Chain: A: PDB Molecule:genome polyprotein;
PDBTitle: nmr structure of the membrane anchor domain (1-31) of the2 nonstructural protein 5a (ns5a) of hepatitis c virus3 (minimized average structure, sample in 100mm dpc)
23c6iieA_
not modelled 7.5 17
PDB header:transferase
Chain: A: PDB Molecule:diacylglycerol kinase alpha;
PDBTitle: crystal structure of human diacylglycerol kinase alpha ef-hand domains2 bound to ca2+
24c5wdaL_
not modelled 7.2 27
PDB header:protein transport
Chain: L: PDB Molecule:general secretion pathway protein g;
PDBTitle: structure of the pulg pseudopilus
25d2ciwa2
not modelled 7.2 63
Fold:EF Hand-like
Superfamily:Cloroperoxidase
Family:Cloroperoxidase
26c6oq5E_
not modelled 7.2 30
PDB header:toxin
Chain: E: PDB Molecule:e3;
PDBTitle: structure of the full-length clostridium difficile toxin b in complex2 with 3 vhhs
27c1nauA_
not modelled 7.0 50
PDB header:hormone/growth factor
Chain: A: PDB Molecule:glucagon;
PDBTitle: nmr solution structure of the glucagon antagonist [deshis1,2 desphe6, glu9]glucagon amide in the presence of3 perdeuterated dodecylphosphocholine micelles
28c2yzjB_
not modelled 6.4 17
PDB header:structural genomics, unknown function
Chain: B: PDB Molecule:167aa long hypothetical dutpase;
PDBTitle: crystal structure of dctp deaminase from sulfolobus tokodaii
29c1r7cA_
not modelled 5.9 56
PDB header:membrane protein
Chain: A: PDB Molecule:genome polyprotein;
PDBTitle: nmr structure of the membrane anchor domain (1-31) of the2 nonstructural protein 5a (ns5a) of hepatitis c virus3 (minimized average structure, sample in 50% tfe)
30c2z9fC_
not modelled 5.8 42
PDB header:biosynthetic protein
Chain: C: PDB Molecule:cellulose synthase operon protein d;
PDBTitle: crystal structure of axcesd protein from acetobacter xylinum
31d2fefa1
not modelled 5.6 53
Fold:Bromodomain-like
Superfamily:PA2201 N-terminal domain-like
Family:PA2201 N-terminal domain-like
32c5jfzB_
not modelled 5.3 38
PDB header:transferase
Chain: B: PDB Molecule:uncharacterized protein yhfg;
PDBTitle: e. coli ecfict in complex with ecfica mutant e28g
33c5jfzF_
not modelled 5.3 38
PDB header:transferase
Chain: F: PDB Molecule:uncharacterized protein yhfg;
PDBTitle: e. coli ecfict in complex with ecfica mutant e28g

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