Phyre Home Retrieve Phyre Job Id
Emailmdejesus@rockefeller.edu
DescriptionRVBD3009c_(gatB)_3367274_3368803
DateThu Aug 8 16:20:17 BST 2019
Unique Job ID05c1b1f11f72dc73
SequenceMTVAAGAAKA ... Download FASTA
Job Typenormal
Job Expiry

Summary 

Top model
Image coloured by rainbow N → C terminus
Model dimensions (Å):X:84.546 Y:57.445 Z:96.648
Model (left) based on template c3ip4B_
Top template information
PDB header:ligase
Chain: B: PDB Molecule:aspartyl/glutamyl-trna(asn/gln) amidotransferase subunit b;
PDBTitle: the high resolution structure of gatcab
Confidence and coverage
Confidence:100.0% Coverage: 93%
471 residues ( 93% of your sequence) have been modelled with 100.0% confidence by the single highest scoring template.
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Sequence analysis 

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Secondary structure and disorder prediction [Show] 

Domain analysis [Show] 

Detailed template information [Hide] 

 

#
Template Alignment Coverage3D Model Confidence
% i.d. Template Information
1c3ip4B_
100.0 43
PDB header:ligase
Chain: B: PDB Molecule:aspartyl/glutamyl-trna(asn/gln) amidotransferase subunit b;
PDBTitle: the high resolution structure of gatcab
2c3al0B_
100.0 40
PDB header:ligase/rna
Chain: B: PDB Molecule:aspartyl/glutamyl-trna(asn/gln) amidotransferase subunit b;
PDBTitle: crystal structure of the glutamine transamidosome from thermotoga2 maritima in the glutamylation state.
3c2g5iB_
100.0 45
PDB header:ligase
Chain: B: PDB Molecule:aspartyl/glutamyl-trna(asn/gln) amidotransferase
PDBTitle: structure of trna-dependent amidotransferase gatcab2 complexed with adp-alf4
4c3h0mE_
100.0 46
PDB header:ligase
Chain: E: PDB Molecule:aspartyl/glutamyl-trna(asn/gln) amidotransferase
PDBTitle: structure of trna-dependent amidotransferase gatcab from2 aquifex aeolicus
5c4wj3E_
100.0 43
PDB header:ligase/rna
Chain: E: PDB Molecule:aspartyl/glutamyl-trna(asn/gln) amidotransferase subunit b;
PDBTitle: crystal structure of the asparagine transamidosome from pseudomonas2 aeruginosa
6c4wj3B_
100.0 43
PDB header:ligase/rna
Chain: B: PDB Molecule:aspartyl/glutamyl-trna(asn/gln) amidotransferase subunit b;
PDBTitle: crystal structure of the asparagine transamidosome from pseudomonas2 aeruginosa
7c4wj3H_
100.0 43
PDB header:ligase/rna
Chain: H: PDB Molecule:aspartyl/glutamyl-trna(asn/gln) amidotransferase subunit b;
PDBTitle: crystal structure of the asparagine transamidosome from pseudomonas2 aeruginosa
8c4wj3K_
100.0 43
PDB header:ligase/rna
Chain: K: PDB Molecule:aspartyl/glutamyl-trna(asn/gln) amidotransferase subunit b;
PDBTitle: crystal structure of the asparagine transamidosome from pseudomonas2 aeruginosa
9c3kfuF_
100.0 45
PDB header:ligase/rna
Chain: F: PDB Molecule:aspartyl/glutamyl-trna(asn/gln) amidotransferase subunit b;
PDBTitle: crystal structure of the transamidosome
10c3kfuI_
100.0 46
PDB header:ligase/rna
Chain: I: PDB Molecule:aspartyl/glutamyl-trna(asn/gln) amidotransferase subunit b;
PDBTitle: crystal structure of the transamidosome
11d2f2ab2
100.0 54
Fold:Glutamine synthetase/guanido kinase
Superfamily:Glutamine synthetase/guanido kinase
Family:GatB/GatE catalytic domain-like
12c2d6fD_
100.0 31
PDB header:ligase/rna
Chain: D: PDB Molecule:glutamyl-trna(gln) amidotransferase subunit e;
PDBTitle: crystal structure of glu-trna(gln) amidotransferase in the2 complex with trna(gln)
13c1zq1D_
100.0 32
PDB header:lyase
Chain: D: PDB Molecule:glutamyl-trna(gln) amidotransferase subunit e;
PDBTitle: structure of gatde trna-dependent amidotransferase from2 pyrococcus abyssi
14c2d6fC_
100.0 31
PDB header:ligase/rna
Chain: C: PDB Molecule:glutamyl-trna(gln) amidotransferase subunit e;
PDBTitle: crystal structure of glu-trna(gln) amidotransferase in the2 complex with trna(gln)
15c4n0iB_
100.0 36
PDB header:ligase
Chain: B: PDB Molecule:glutamyl-trna(gln) amidotransferase subunit b,
PDBTitle: crystal structure of s. cerevisiae mitochondrial gatfab in complex2 with glutamine
16d2d6fc3
100.0 32
Fold:Glutamine synthetase/guanido kinase
Superfamily:Glutamine synthetase/guanido kinase
Family:GatB/GatE catalytic domain-like
17d1zq1c3
100.0 28
Fold:Glutamine synthetase/guanido kinase
Superfamily:Glutamine synthetase/guanido kinase
Family:GatB/GatE catalytic domain-like
18d2f2ab1
99.9 23
Fold:GatB/YqeY motif
Superfamily:GatB/YqeY motif
Family:GatB/GatE C-terminal domain-like
19d1ng6a_
98.5 17
Fold:GatB/YqeY motif
Superfamily:GatB/YqeY motif
Family:GatB/YqeY domain
20c3tl4X_
97.8 11
PDB header:ligase
Chain: X: PDB Molecule:glutaminyl-trna synthetase;
PDBTitle: crystal structure of the trna binding domain of glutaminyl-trna2 synthetase from saccharomyces cerevisiae
21d1zq1c1
not modelled 97.3 24
Fold:GatB/YqeY motif
Superfamily:GatB/YqeY motif
Family:GatB/GatE C-terminal domain-like
22c4ye6A_
not modelled 95.6 14
PDB header:ligase
Chain: A: PDB Molecule:glutamine--trna ligase;
PDBTitle: the crystal structure of the intact human glnrs
23d2d6fc1
not modelled 90.2 32
Fold:GatB/YqeY motif
Superfamily:GatB/YqeY motif
Family:GatB/GatE C-terminal domain-like
24c2v27A_
not modelled 45.0 26
PDB header:oxidoreductase
Chain: A: PDB Molecule:phenylalanine hydroxylase;
PDBTitle: structure of the cold active phenylalanine hydroxylase from colwellia2 psychrerythraea 34h
25c3tcyA_
not modelled 44.7 27
PDB header:oxidoreductase
Chain: A: PDB Molecule:phenylalanine-4-hydroxylase;
PDBTitle: crystallographic structure of phenylalanine hydroxylase from2 chromobacterium violaceum (cpah) bound to phenylalanine in a site3 distal to the active site
26c1ixrB_
not modelled 43.7 19
PDB header:hydrolase
Chain: B: PDB Molecule:holliday junction dna helicase ruva;
PDBTitle: ruva-ruvb complex
27d1ltza_
not modelled 42.9 29
Fold:Aromatic aminoacid monoxygenases, catalytic and oligomerization domains
Superfamily:Aromatic aminoacid monoxygenases, catalytic and oligomerization domains
Family:Aromatic aminoacid monoxygenases, catalytic and oligomerization domains
28c1hjpA_
not modelled 40.3 10
PDB header:dna recombination
Chain: A: PDB Molecule:ruva;
PDBTitle: holliday junction binding protein ruva from e. coli
29c4bptC_
not modelled 38.7 24
PDB header:oxidoreductase
Chain: C: PDB Molecule:phenylalanine-4-hydroxylase (pah) (phe-4-monooxygenase);
PDBTitle: structural and thermodynamic insight into phenylalanine2 hydroxylase from the human pathogen legionella pneumophila
30c2lcqA_
not modelled 38.2 40
PDB header:metal binding protein
Chain: A: PDB Molecule:putative toxin vapc6;
PDBTitle: solution structure of the endonuclease nob1 from p.horikoshii
31c3ep3A_
not modelled 38.0 17
PDB header:lyase
Chain: A: PDB Molecule:s-adenosylmethionine decarboxylase alpha chain;
PDBTitle: human adometdc d174n mutant with no putrescine bound
32d2d32a1
not modelled 37.5 22
Fold:Glutamine synthetase/guanido kinase
Superfamily:Glutamine synthetase/guanido kinase
Family:Glutamate-cysteine ligase
33c2phmA_
not modelled 35.2 31
PDB header:oxidoreductase
Chain: A: PDB Molecule:protein (phenylalanine-4-hydroxylase);
PDBTitle: structure of phenylalanine hydroxylase dephosphorylated
34d1xrsb2
not modelled 34.0 25
Fold:Dodecin subunit-like
Superfamily:D-lysine 5,6-aminomutase beta subunit KamE, N-terminal domain
Family:D-lysine 5,6-aminomutase beta subunit KamE, N-terminal domain
35c3nztA_
not modelled 33.3 26
PDB header:ligase
Chain: A: PDB Molecule:glutamate--cysteine ligase;
PDBTitle: 2.0 angstrom crystal structure of glutamate--cysteine ligase (gsha)2 ftom francisella tularensis in complex with amp
36c2wzr2_
not modelled 33.1 17
PDB header:virus
Chain: 2: PDB Molecule:polyprotein;
PDB Fragment:residues 200-284 PDBTitle: the structure of foot and mouth disease virus serotype sat1
37c1lvaA_
not modelled 32.9 14
PDB header:translation
Chain: A: PDB Molecule:selenocysteine-specific elongation factor;
PDBTitle: crystal structure of a c-terminal fragment of moorella2 thermoacetica elongation factor selb
38c2wff2_
not modelled 32.9 29
PDB header:virus
Chain: 2: PDB Molecule:p1;
PDB Fragment:capsid protein vp2, residues 81-310; PDBTitle: equine rhinitis a virus
39d2pw6a1
not modelled 32.6 17
Fold:Phosphorylase/hydrolase-like
Superfamily:LigB-like
Family:LigB-like
40c2mev2_
not modelled 32.5 29
PDB header:virus
Chain: 2: PDB Molecule:mengo virus coat protein (subunit vp2);
PDBTitle: structural refinement and analysis of mengo virus
41c5a8fC_
not modelled 32.0 24
PDB header:viral protein
Chain: C: PDB Molecule:human saffold virus-3 vp2;
PDBTitle: structure and genome release mechanism of human cardiovirus saffold2 virus-3
42c2c8iB_
not modelled 32.0 41
PDB header:virus/receptor
Chain: B: PDB Molecule:echovirus 11 coat protein vp2;
PDBTitle: complex of echovirus type 12 with domains 1, 2, 3 and 4 of its2 receptor decay accelerating factor (cd55) by cryo electron microscopy3 at 16 a
43c2mroB_
not modelled 32.0 21
PDB header:transport protein/signaling protein
Chain: B: PDB Molecule:dna damage-inducible protein 1;
PDBTitle: structure of the complex of ubiquitin and the uba domain from dna-2 damage-inducible 1 protein (ddi1)
44c1c8m2_
not modelled 32.0 41
PDB header:virus
Chain: 2: PDB Molecule:human rhinovirus 16 coat protein;
PDB Fragment:residues 2-78; PDBTitle: refined crystal structure of human rhinovirus 16 complexed with2 vp63843 (pleconaril), an anti-picornaviral drug currently in clinical3 trials
45c1emxA_
not modelled 30.2 56
PDB header:toxin
Chain: A: PDB Molecule:heteropodatoxin 2;
PDBTitle: solution structure of hptx2, a toxin from heteropoda2 venatoria spider venom that blocks kv4.2 potassium channel
46c2oq0D_
not modelled 29.2 12
PDB header:protein binding
Chain: D: PDB Molecule:gamma-interferon-inducible protein ifi-16;
PDBTitle: crystal structure of the first hin-200 domain of interferon-inducible2 protein 16
47c5xs5B_
not modelled 29.1 35
PDB header:virus
Chain: B: PDB Molecule:genome polyprotein;
PDBTitle: structure of coxsackievirus a6 (cva6) virus procapsid particle
48d1jkea_
not modelled 29.1 24
Fold:DTD-like
Superfamily:DTD-like
Family:DTD-like
49c4x82A_
not modelled 28.9 22
PDB header:transport protein
Chain: A: PDB Molecule:zinc transporter zip4;
PDBTitle: crystal structure of the extracellular domain of zip4
50d1mlwa_
not modelled 28.8 33
Fold:Aromatic aminoacid monoxygenases, catalytic and oligomerization domains
Superfamily:Aromatic aminoacid monoxygenases, catalytic and oligomerization domains
Family:Aromatic aminoacid monoxygenases, catalytic and oligomerization domains
51d2oq0a2
not modelled 28.7 12
Fold:OB-fold
Superfamily:HIN-2000 domain-like
Family:HIN-200/IF120x domain
52c5yzpA_
not modelled 28.1 17
PDB header:immune system
Chain: A: PDB Molecule:ifi204;
PDBTitle: crystal structure of p204 hina domain
53c1ncqB_
not modelled 28.1 53
PDB header:virus
Chain: B: PDB Molecule:coat protein vp2;
PDBTitle: the structure of hrv14 when complexed with pleconaril, an2 antiviral compound
54c5j98B_
not modelled 28.0 18
PDB header:virus
Chain: B: PDB Molecule:vp2;
PDBTitle: crystal structure of slow bee paralysis virus at 2.6a resolution
55c3tbxB_
not modelled 27.8 23
PDB header:immune system/agonist
Chain: B: PDB Molecule:beta-2-microglobulin;
PDBTitle: crystal structure of the murine class i major histocompatibility2 complex h-2db in complex with lcmv-derived gp33 altered peptide3 ligand v3p
56c1bev2_
not modelled 27.7 47
PDB header:virus
Chain: 2: PDB Molecule:bovine enterovirus coat proteins vp1 to vp4;
PDBTitle: bovine enterovirus vg-5-27
57c3b6yB_
not modelled 27.4 20
PDB header:protein binding
Chain: B: PDB Molecule:gamma-interferon-inducible protein ifi-16;
PDBTitle: crystal structure of the second hin-200 domain of interferon-inducible2 protein 16
58d1phza2
not modelled 26.9 31
Fold:Aromatic aminoacid monoxygenases, catalytic and oligomerization domains
Superfamily:Aromatic aminoacid monoxygenases, catalytic and oligomerization domains
Family:Aromatic aminoacid monoxygenases, catalytic and oligomerization domains
59c2v9vA_
not modelled 26.9 15
PDB header:transcription
Chain: A: PDB Molecule:selenocysteine-specific elongation factor;
PDBTitle: crystal structure of moorella thermoacetica selb(377-511)
60c2x7pA_
not modelled 26.7 12
PDB header:unknown function
Chain: A: PDB Molecule:possible thiamine biosynthesis enzyme;
PDBTitle: the conserved candida albicans ca3427 gene product defines a new2 family of proteins exhibiting the generic periplasmic binding3 protein structural fold
61c4jbkA_
not modelled 26.6 20
PDB header:dna binding protein/dna
Chain: A: PDB Molecule:interferon-activable protein 202;
PDBTitle: molecular basis for abrogation of activation of pro-inflammatory2 cytokines
62d1j7ga_
not modelled 26.5 23
Fold:DTD-like
Superfamily:DTD-like
Family:DTD-like
63d1mwpa_
not modelled 26.4 23
Fold:SRCR-like
Superfamily:A heparin-binding domain
Family:A heparin-binding domain
64c4qpgB_
not modelled 26.4 17
PDB header:virus
Chain: B: PDB Molecule:capsid protein vp0;
PDBTitle: crystal structure of empty hepatitis a virus
65c3e2tA_
not modelled 26.2 33
PDB header:oxidoreductase
Chain: A: PDB Molecule:tryptophan 5-hydroxylase 1;
PDBTitle: the catalytic domain of chicken tryptophan hydroxylase 12 with bound tryptophan
66c3jb4B_
not modelled 26.0 29
PDB header:virus
Chain: B: PDB Molecule:vp0;
PDBTitle: structure of ljungan virus: insight into picornavirus packaging
67c3cjiC_
not modelled 26.0 29
PDB header:virus
Chain: C: PDB Molecule:polyprotein;
PDBTitle: structure of seneca valley virus-001
68d1j8ua_
not modelled 25.9 31
Fold:Aromatic aminoacid monoxygenases, catalytic and oligomerization domains
Superfamily:Aromatic aminoacid monoxygenases, catalytic and oligomerization domains
Family:Aromatic aminoacid monoxygenases, catalytic and oligomerization domains
69d1vcca_
not modelled 25.4 56
Fold:DNA topoisomerase I domain
Superfamily:DNA topoisomerase I domain
Family:Vaccinia DNA topoisomerase I, 9 kDa N-terminal fragment
70c4l5tB_
not modelled 25.3 20
PDB header:immune system
Chain: B: PDB Molecule:interferon-activable protein 202;
PDBTitle: crystal structure of the tetrameric p202 hin2
71c5yzwA_
not modelled 25.1 22
PDB header:immune system
Chain: A: PDB Molecule:ifi204;
PDBTitle: crystal structure of p204 hinb domain
72c5k0uC_
not modelled 24.9 35
PDB header:virus
Chain: C: PDB Molecule:capsid protein vp2;
PDBTitle: cryoem structure of the full virion of a human rhinovirus c
73c5jzgC_
not modelled 24.7 35
PDB header:virus
Chain: C: PDB Molecule:capsid protein vp0;
PDBTitle: cryoem structure of the native empty particle of a human rhinovirus c
74c4hw9E_
not modelled 24.6 11
PDB header:membrane protein
Chain: E: PDB Molecule:mechanosensitive channel mscs;
PDBTitle: crystal structure of helicobacter pylori mscs (closed state)
75c3vbfB_
not modelled 24.5 35
PDB header:virus
Chain: B: PDB Molecule:genome polyprotein, capsid protein vp2;
PDBTitle: crystal structure of formaldehyde treated human enterovirus 71 (space2 group i23)
76c2i1vB_
not modelled 23.4 18
PDB header:transferase, hydrolase
Chain: B: PDB Molecule:6-phosphofructo-2-kinase/fructose-2,6-
PDBTitle: crystal structure of pfkfb3 in complex with adp and2 fructose-2,6-bisphosphate
77c3e4rA_
not modelled 23.2 15
PDB header:transport protein
Chain: A: PDB Molecule:nitrate transport protein;
PDBTitle: crystal structure of the alkanesulfonate binding protein2 (ssua) from the phytopathogenic bacteria xanthomonas3 axonopodis pv. citri bound to hepes
78c5denA_
not modelled 22.5 31
PDB header:oxidoreductase
Chain: A: PDB Molecule:phenylalanine-4-hydroxylase;
PDBTitle: the first structure of a full-length mammalian phenylalanine2 hydroxylase reveals the architecture of an auto-inhibited tetramer
79c4v06A_
not modelled 22.5 31
PDB header:oxidoreductase
Chain: A: PDB Molecule:tryptophan 5-hydroxylase 2;
PDBTitle: crystal structure of human tryptophan hydroxylase 2 (tph2), catalytic2 domain
80c3rn5A_
not modelled 22.3 15
PDB header:immune system/dna
Chain: A: PDB Molecule:interferon-inducible protein aim2;
PDBTitle: structural basis of cytosolic dna recognition by innate immune2 receptors
81d1toha_
not modelled 22.3 26
Fold:Aromatic aminoacid monoxygenases, catalytic and oligomerization domains
Superfamily:Aromatic aminoacid monoxygenases, catalytic and oligomerization domains
Family:Aromatic aminoacid monoxygenases, catalytic and oligomerization domains
82c4z92C_
not modelled 22.1 18
PDB header:virus
Chain: C: PDB Molecule:capsid subunit vp0;
PDBTitle: crystal structure of parechovirus-1 virion
83c3t79A_
not modelled 21.6 56
PDB header:dna binding protein/dna
Chain: A: PDB Molecule:klla0e03807p;
PDBTitle: ndc10: a platform for inner kinetochore assembly in budding yeast
84c3sqiA_
not modelled 21.5 56
PDB header:dna binding protein/dna
Chain: A: PDB Molecule:klla0e03807p;
PDBTitle: dna binding domain of ndc10
85c2avuF_
not modelled 21.4 26
PDB header:transcription activator
Chain: F: PDB Molecule:flagellar transcriptional activator flhc;
PDBTitle: structure of the escherichia coli flhdc complex, a2 prokaryotic heteromeric regulator of transcription
86c5jk5A_
not modelled 21.3 31
PDB header:oxidoreductase
Chain: A: PDB Molecule:phenylalanine-4-hydroxylase;
PDBTitle: phenylalanine hydroxylase from dictyostelium - bh2 complex
87d2avue1
not modelled 21.2 26
Fold:FlhC-like
Superfamily:FlhC-like
Family:FlhC-like
88c5ekqA_
not modelled 20.7 16
PDB header:membrane protein
Chain: A: PDB Molecule:outer membrane protein assembly factor bama;
PDBTitle: the structure of the bamacde subcomplex from e. coli
89d2b8ta2
not modelled 20.0 27
Fold:Glucocorticoid receptor-like (DNA-binding domain)
Superfamily:Glucocorticoid receptor-like (DNA-binding domain)
Family:Type II thymidine kinase zinc finger
90d2nt0a2
not modelled 19.9 23
Fold:TIM beta/alpha-barrel
Superfamily:(Trans)glycosidases
Family:beta-glycanases
91c3j3vO_
not modelled 19.9 11
PDB header:ribosome
Chain: O: PDB Molecule:50s ribosomal protein l18;
PDBTitle: atomic model of the immature 50s subunit from bacillus subtilis (state2 i-a)
92c1bbt2_
not modelled 19.7 29
PDB header:virus
Chain: 2: PDB Molecule:foot-and-mouth disease virus (subunit vp2);
PDBTitle: methods used in the structure determination of foot and2 mouth disease virus
93c4jbmA_
not modelled 18.8 10
PDB header:dna binding protein/dna
Chain: A: PDB Molecule:interferon-inducible protein aim2;
PDBTitle: structure of murine dna binding protein bound with ds dna
94c1tmf2_
not modelled 18.2 19
PDB header:virus
Chain: 2: PDB Molecule:theiler's murine encephalomyelitis virus
PDBTitle: three-dimensional structure of theiler murine2 encephalomyelitis virus (bean strain)
95c2dboA_
not modelled 18.0 14
PDB header:hydrolase
Chain: A: PDB Molecule:d-tyrosyl-trna(tyr) deacylase;
PDBTitle: crystal structure of d-tyr-trna(tyr) deacylase from aquifex aeolicus
96c5c9aB_
not modelled 17.8 41
PDB header:virus
Chain: B: PDB Molecule:vp0;
PDBTitle: crystal structure of empty coxsackievirus a16 particle
97c4mzuG_
not modelled 17.7 20
PDB header:isomerase, transferase
Chain: G: PDB Molecule:wxcm-like protein;
PDBTitle: crystal structure of fdtd, a bifunctional ketoisomerase/n-2 acetyltransferase from shewanella denitrificans
98d1zunb1
not modelled 17.7 12
Fold:Reductase/isomerase/elongation factor common domain
Superfamily:Translation proteins
Family:Elongation factors
99c5tvoA_
not modelled 17.5 24
PDB header:lyase
Chain: A: PDB Molecule:s-adenosylmethionine decarboxylase proenzyme;
PDBTitle: crystal structure of trypanosoma brucei adometdc-delta26 monomer

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