Phyre Home Retrieve Phyre Job Id
Emailmdejesus@rockefeller.edu
DescriptionRVBD3011c_(gatA)_3369960_3371444
DateThu Aug 8 16:20:18 BST 2019
Unique Job ID152e405b7f24d9a5
SequenceVTDIIRSDAA ... Download FASTA
Job Typenormal
Job Expiry

Summary 

Top model
Image coloured by rainbow N → C terminus
Model dimensions (Å):X:58.763 Y:61.712 Z:55.986
Model (left) based on template d2f2aa1
Top template information
Fold:Amidase signature (AS) enzymes
Superfamily:Amidase signature (AS) enzymes
Family:Amidase signature (AS) enzymes
Confidence and coverage
Confidence:100.0% Coverage: 96%
476 residues ( 96% of your sequence) have been modelled with 100.0% confidence by the single highest scoring template.
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Sequence analysis 

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Secondary structure and disorder prediction [Show] 

Domain analysis [Show] 

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#
Template Alignment Coverage3D Model Confidence
% i.d. Template Information
1d2f2aa1



100.0 47
Fold:Amidase signature (AS) enzymes
Superfamily:Amidase signature (AS) enzymes
Family:Amidase signature (AS) enzymes
2c4wj3A_



100.0 51
PDB header:ligase/rna
Chain: A: PDB Molecule:glutamyl-trna(gln) amidotransferase subunit a;
PDBTitle: crystal structure of the asparagine transamidosome from pseudomonas2 aeruginosa
3c3h0rP_



100.0 47
PDB header:ligase
Chain: P: PDB Molecule:glutamyl-trna(gln) amidotransferase subunit a;
PDBTitle: structure of trna-dependent amidotransferase gatcab from2 aquifex aeolicus
4c6diiH_



100.0 27
PDB header:hydrolase
Chain: H: PDB Molecule:fatty acid amide hydrolase;
PDBTitle: structure of arabidopsis fatty acid amide hydrolase in complex with2 methyl linolenyl fluorophosphonate
5d1m22a_



100.0 33
Fold:Amidase signature (AS) enzymes
Superfamily:Amidase signature (AS) enzymes
Family:Amidase signature (AS) enzymes
6c3kfuE_



100.0 49
PDB header:ligase/rna
Chain: E: PDB Molecule:glutamyl-trna(gln) amidotransferase subunit a;
PDBTitle: crystal structure of the transamidosome
7c4gysA_



100.0 29
PDB header:hydrolase
Chain: A: PDB Molecule:allophanate hydrolase;
PDBTitle: granulibacter bethesdensis allophanate hydrolase co-crystallized with2 malonate
8c2vyaB_



100.0 21
PDB header:hydrolase
Chain: B: PDB Molecule:fatty-acid amide hydrolase 1;
PDBTitle: crystal structure of fatty acid amide hydrolase conjugated2 with the drug-like inhibitor pf-750
9d1mt5a_



100.0 20
Fold:Amidase signature (AS) enzymes
Superfamily:Amidase signature (AS) enzymes
Family:Amidase signature (AS) enzymes
10c4cp8C_



100.0 28
PDB header:hydrolase
Chain: C: PDB Molecule:allophanate hydrolase;
PDBTitle: structure of the amidase domain of allophanate hydrolase2 from pseudomonas sp strain adp
11c5h6sB_



100.0 27
PDB header:hydrolase
Chain: B: PDB Molecule:amidase;
PDBTitle: crystal structure of hydrazidase s179a mutant complexed with a2 substrate
12c5h6tB_



100.0 27
PDB header:hydrolase
Chain: B: PDB Molecule:amidase;
PDBTitle: crystal structure of hydrazidase from microbacterium sp. strain hm58-2
13c3a2qA_



100.0 30
PDB header:hydrolase
Chain: A: PDB Molecule:6-aminohexanoate-cyclic-dimer hydrolase;
PDBTitle: structure of 6-aminohexanoate cyclic dimer hydrolase complexed with2 substrate
14c6c6gA_



100.0 35
PDB header:hydrolase
Chain: A: PDB Molecule:biuret hydrolase;
PDBTitle: an unexpected vestigial protein complex reveals the evolutionary2 origins of an s-triazine catabolic enzyme. inhibitor bound complex.
15c4yj6A_



100.0 29
PDB header:hydrolase
Chain: A: PDB Molecule:aryl acylamidase;
PDBTitle: the crystal structure of a bacterial aryl acylamidase belonging to the2 amidase signature (as) enzymes family
16c2dc0A_



100.0 32
PDB header:hydrolase
Chain: A: PDB Molecule:probable amidase;
PDBTitle: crystal structure of amidase
17c3a1iA_



100.0 31
PDB header:hydrolase
Chain: A: PDB Molecule:amidase;
PDBTitle: crystal structure of rhodococcus sp. n-771 amidase complexed2 with benzamide
18d2gi3a1



100.0 45
Fold:Amidase signature (AS) enzymes
Superfamily:Amidase signature (AS) enzymes
Family:Amidase signature (AS) enzymes
19d1ocka_



100.0 30
Fold:Amidase signature (AS) enzymes
Superfamily:Amidase signature (AS) enzymes
Family:Amidase signature (AS) enzymes
20c4issA_



100.0 25
PDB header:hydrolase
Chain: A: PDB Molecule:allophanate hydrolase;
PDBTitle: semet-substituted kluyveromyces lactis allophanate hydrolase
21c5i8iD_



not modelled 100.0 26
PDB header:hydrolase
Chain: D: PDB Molecule:urea amidolyase;
PDBTitle: crystal structure of the k. lactis urea amidolyase
22c4n0hA_



not modelled 100.0 32
PDB header:ligase
Chain: A: PDB Molecule:glutamyl-trna(gln) amidotransferase subunit a,
PDBTitle: crystal structure of s. cerevisiae mitochondrial gatfab
23c5ewqC_



not modelled 100.0 27
PDB header:hydrolase
Chain: C: PDB Molecule:amidase;
PDBTitle: the crystal structure of an amidase family protein from bacillus2 anthracis str. ames
24c4m1eC_



not modelled 38.2 12
PDB header:transferase
Chain: C: PDB Molecule:purine nucleoside phosphorylase;
PDBTitle: crystal structure of purine nucleoside phosphorylase i from2 planctomyces limnophilus dsm 3776, nysgrc target 029364.
25d1y88a1



not modelled 33.8 20
Fold:SAM domain-like
Superfamily:Rad51 N-terminal domain-like
Family:Hypothetical protein AF1548, C-terminal domain
26c4lnaA_



not modelled 33.3 20
PDB header:transferase
Chain: A: PDB Molecule:purine nucleoside phosphorylase;
PDBTitle: crystal structure of purine nucleoside phosphorylase i from spirosoma2 linguale dsm 74, nysgrc target 029362
27d1li4a2



not modelled 32.2 19
Fold:Flavodoxin-like
Superfamily:Formate/glycerate dehydrogenase catalytic domain-like
Family:S-adenosylhomocystein hydrolase
28d1h5wa_



not modelled 30.4 10
Fold:Upper collar protein gp10 (connector protein)
Superfamily:Upper collar protein gp10 (connector protein)
Family:Upper collar protein gp10 (connector protein)
29c4nsnC_



not modelled 30.3 15
PDB header:transferase
Chain: C: PDB Molecule:purine nucleoside phosphorylase;
PDBTitle: crystal structure of purine nucleoside phosphorylase from2 porphyromonas gingivalis atcc 33277, nysgrc target 030972,3 orthorhombic symmetry
30c1ijgE_



not modelled 30.0 10
PDB header:viral protein
Chain: E: PDB Molecule:upper collar protein;
PDBTitle: structure of the bacteriophage phi29 head-tail connector2 protein
31c4l5cE_



not modelled 29.2 16
PDB header:transferase
Chain: E: PDB Molecule:s-methyl-5'-thioadenosine phosphorylase;
PDBTitle: methylthioadenosine phosphorylase from schistosoma mansoni in complex2 with adenine in space group p212121
32c4uc0A_



not modelled 29.2 17
PDB header:transferase
Chain: A: PDB Molecule:purine nucleoside phosphorylase;
PDBTitle: crystal structure of a purine nucleoside phosphorylase (psi-nysgrc-2 029736) from agrobacterium vitis
33c3o8oC_



not modelled 26.2 7
PDB header:transferase
Chain: C: PDB Molecule:6-phosphofructokinase subunit alpha;
PDBTitle: structure of phosphofructokinase from saccharomyces cerevisiae
34d2dloa2



not modelled 23.1 21
Fold:Glucocorticoid receptor-like (DNA-binding domain)
Superfamily:Glucocorticoid receptor-like (DNA-binding domain)
Family:LIM domain
35d1h1js_



not modelled 22.1 11
Fold:LEM/SAP HeH motif
Superfamily:SAP domain
Family:SAP domain
36d1jjcb4



not modelled 20.4 13
Fold:Ferredoxin-like
Superfamily:Anticodon-binding domain of PheRS
Family:Anticodon-binding domain of PheRS
37c5ifkC_



not modelled 20.2 20
PDB header:transferase
Chain: C: PDB Molecule:purine nucleoside phosphorylase;
PDBTitle: purine nucleoside phosphorylase
38c3ilvA_



not modelled 18.7 17
PDB header:ligase
Chain: A: PDB Molecule:glutamine-dependent nad(+) synthetase;
PDBTitle: crystal structure of a glutamine-dependent nad(+) synthetase2 from cytophaga hutchinsonii
39c1us7B_



not modelled 18.3 18
PDB header:chaperone
Chain: B: PDB Molecule:hsp90 co-chaperone cdc37;
PDBTitle: complex of hsp90 and p50
40d1us7b_



not modelled 18.3 18
Fold:Hsp90 co-chaperone CDC37
Superfamily:Hsp90 co-chaperone CDC37
Family:Hsp90 co-chaperone CDC37
41c4g4sP_



not modelled 18.2 13
PDB header:hydrolase/chaperone
Chain: P: PDB Molecule:proteasome assembly chaperone 2;
PDBTitle: structure of proteasome-pba1-pba2 complex
42d1tf1a_



not modelled 18.1 14
Fold:Profilin-like
Superfamily:GAF domain-like
Family:IclR ligand-binding domain-like
43c3d3oA_



not modelled 17.5 16
PDB header:transcription regulator
Chain: A: PDB Molecule:putative transcriptional regulator, icir family;
PDBTitle: crystal structure of the effector domain of the putative2 transcriptional regulator iclr from acinetobacter sp. adp1
44c5tjjA_



not modelled 16.9 20
PDB header:transcription
Chain: A: PDB Molecule:transcriptional regulator, iclr family;
PDBTitle: crystal structure of icir transcriptional regulator from2 alicyclobacillus acidocaldarius
45d1q23a_



not modelled 16.7 5
Fold:CoA-dependent acyltransferases
Superfamily:CoA-dependent acyltransferases
Family:CAT-like
46c5y6iB_



not modelled 16.6 25
PDB header:transcription
Chain: B: PDB Molecule:transcriptional regulator kdgr;
PDBTitle: crystal structure of pseudomonas aeruginosa hmgr
47d3claa_



not modelled 16.3 10
Fold:CoA-dependent acyltransferases
Superfamily:CoA-dependent acyltransferases
Family:CAT-like
48c2i9dC_



not modelled 15.1 3
PDB header:transferase
Chain: C: PDB Molecule:chloramphenicol acetyltransferase;
PDBTitle: chloramphenicol acetyltransferase
49d1ggaa2



not modelled 14.6 27
Fold:FwdE/GAPDH domain-like
Superfamily:Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain
Family:GAPDH-like
50c3obfA_



not modelled 14.2 16
PDB header:transcription regulator
Chain: A: PDB Molecule:putative transcriptional regulator, iclr family;
PDBTitle: crystal structure of putative transcriptional regulator, iclr family;2 targeted domain 129...302
51c2na9A_



not modelled 13.7 13
PDB header:signaling protein
Chain: A: PDB Molecule:cytokine receptor common subunit beta;
PDBTitle: transmembrane structure of the p441a mutant of the cytokine receptor2 common subunit beta
52c2na8A_



not modelled 13.3 13
PDB header:membrane protein
Chain: A: PDB Molecule:cytokine receptor common subunit beta;
PDBTitle: transmembrane structure of the cytokine receptor common subunit beta
53c3dahB_



not modelled 13.0 16
PDB header:transferase
Chain: B: PDB Molecule:ribose-phosphate pyrophosphokinase;
PDBTitle: 2.3 a crystal structure of ribose-phosphate pyrophosphokinase from2 burkholderia pseudomallei
54c3o8nA_



not modelled 12.3 9
PDB header:transferase
Chain: A: PDB Molecule:6-phosphofructokinase, muscle type;
PDBTitle: structure of phosphofructokinase from rabbit skeletal muscle
55d2f48a1



not modelled 11.5 13
Fold:Phosphofructokinase
Superfamily:Phosphofructokinase
Family:Phosphofructokinase
56d1i32a2



not modelled 11.2 27
Fold:FwdE/GAPDH domain-like
Superfamily:Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain
Family:GAPDH-like
57d1w53a_



not modelled 11.1 12
Fold:KaiA/RbsU domain
Superfamily:KaiA/RbsU domain
Family:Phosphoserine phosphatase RsbU, N-terminal domain
58c2kvuA_



not modelled 11.0 8
PDB header:transcription regulator
Chain: A: PDB Molecule:mkl/myocardin-like protein 1;
PDBTitle: solution nmr structure of sap domain of mkl/myocardin-like2 protein 1 from h.sapiens, northeast structural genomics3 consortium target target hr4547e
59c4qmkB_



not modelled 10.8 41
PDB header:toxin
Chain: B: PDB Molecule:type iii secretion system effector protein exou;
PDBTitle: crystal structure of type iii effector protein exou (exou)
60c2lz1A_



not modelled 10.5 16
PDB header:transcription
Chain: A: PDB Molecule:nuclear factor erythroid 2-related factor 2;
PDBTitle: solution nmr structure of the dna-binding domain of human nf-e2-2 related factor 2, northeast structural genomics consortium (nesg)3 target hr3520o
61d1zrja1



not modelled 10.2 11
Fold:LEM/SAP HeH motif
Superfamily:SAP domain
Family:SAP domain
62c4glfA_



not modelled 10.2 29
PDB header:transferase
Chain: A: PDB Molecule:rsfp;
PDBTitle: crystal structure of methylthioadenosine phosphorylase sourced from an2 antarctic soil metagenomic library
63c3k2qA_



not modelled 9.8 10
PDB header:transferase
Chain: A: PDB Molecule:pyrophosphate-dependent phosphofructokinase;
PDBTitle: crystal structure of pyrophosphate-dependent2 phosphofructokinase from marinobacter aquaeolei, northeast3 structural genomics consortium target mqr88
64c4fqdA_



not modelled 9.6 28
PDB header:transferase
Chain: A: PDB Molecule:niko protein;
PDBTitle: crystal structure of the enolpyruvyl transferase niko from2 streptomyces tendae
65c3izbF_



not modelled 9.3 16
PDB header:ribosome
Chain: F: PDB Molecule:40s ribosomal protein rps5 (s7p);
PDBTitle: localization of the small subunit ribosomal proteins into a 6.1 a2 cryo-em map of saccharomyces cerevisiae translating 80s ribosome
66c2vvdA_



not modelled 9.1 67
PDB header:viral protein
Chain: A: PDB Molecule:spike protein p1;
PDBTitle: crystal structure of the receptor binding domain of the2 spike protein p1 from bacteriophage pm2
67c1ysqA_



not modelled 9.1 16
PDB header:gene regulation
Chain: A: PDB Molecule:hth-type transcriptional regulator yiaj;
PDBTitle: the crystal structure of transcriptional regulator yaij
68c6an0A_



not modelled 8.9 15
PDB header:oxidoreductase
Chain: A: PDB Molecule:histidinol dehydrogenase;
PDBTitle: crystal structure of histidinol dehydrogenase from elizabethkingia2 anophelis
69d1k3ta2



not modelled 8.9 26
Fold:FwdE/GAPDH domain-like
Superfamily:Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain
Family:GAPDH-like
70c4xfrB_



not modelled 8.6 35
PDB header:structural genomics, unknown function
Chain: B: PDB Molecule:uncharacterized protein;
PDBTitle: crystal structure of a domain of unknown function (duf1537) from2 bordetella bronchiseptica (bb3215), target efi-511620, with bound3 citrate, domain swapped dimer, space group p6522
71c3ke8A_



not modelled 8.6 23
PDB header:oxidoreductase
Chain: A: PDB Molecule:4-hydroxy-3-methylbut-2-enyl diphosphate reductase;
PDBTitle: crystal structure of isph:hmbpp-complex
72c3urkA_



not modelled 8.6 23
PDB header:oxidoreductase
Chain: A: PDB Molecule:4-hydroxy-3-methylbut-2-enyl diphosphate reductase;
PDBTitle: isph in complex with propynyl diphosphate (1061)
73d1sknp_



not modelled 8.6 12
Fold:A DNA-binding domain in eukaryotic transcription factors
Superfamily:A DNA-binding domain in eukaryotic transcription factors
Family:A DNA-binding domain in eukaryotic transcription factors
74c2akwB_



not modelled 8.5 13
PDB header:ligase
Chain: B: PDB Molecule:phenylalanyl-trna synthetase beta chain;
PDBTitle: crystal structure of t.thermophilus phenylalanyl-trna synthetase2 complexed with p-cl-phenylalanine
75c3b8iF_



not modelled 8.5 11
PDB header:lyase
Chain: F: PDB Molecule:pa4872 oxaloacetate decarboxylase;
PDBTitle: crystal structure of oxaloacetate decarboxylase from pseudomonas2 aeruginosa (pa4872) in complex with oxalate and mg2+.
76d2g82a2



not modelled 8.5 18
Fold:FwdE/GAPDH domain-like
Superfamily:Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain
Family:GAPDH-like
77c5xoeA_



not modelled 8.5 13
PDB header:transferase
Chain: A: PDB Molecule:atp-dependent 6-phosphofructokinase;
PDBTitle: crystal structure of the apo staphylococcus aureus phosphofructokinase
78c4my4A_



not modelled 8.4 12
PDB header:isomerase
Chain: A: PDB Molecule:2,3-bisphosphoglycerate-independent phosphoglycerate
PDBTitle: crystal structure of phosphoglycerate mutase from staphylococcus2 aureus.
79c3tu3B_



not modelled 8.3 50
PDB header:toxin/toxin chaperone
Chain: B: PDB Molecule:exou;
PDBTitle: 1.92 angstrom resolution crystal structure of the full-length spcu in2 complex with full-length exou from the type iii secretion system of3 pseudomonas aeruginosa
80c1dvpA_



not modelled 8.3 12
PDB header:transferase
Chain: A: PDB Molecule:hepatocyte growth factor-regulated tyrosine
PDBTitle: crystal structure of the vhs and fyve tandem domains of hrs,2 a protein involved in membrane trafficking and signal3 transduction
81c3dqqB_



not modelled 8.2 9
PDB header:structural genomics, unknown function
Chain: B: PDB Molecule:putative trna synthase;
PDBTitle: the crystal structure of the putative trna synthase from salmonella2 typhimurium lt2
82c3zyqA_



not modelled 8.2 3
PDB header:signaling
Chain: A: PDB Molecule:hepatocyte growth factor-regulated tyrosine kinase
PDBTitle: crystal structure of the tandem vhs and fyve domains of hepatocyte2 growth factor-regulated tyrosine kinase substrate (hgs-hrs) at 1.48 a3 resolution
83d2do1a1



not modelled 8.2 11
Fold:LEM/SAP HeH motif
Superfamily:SAP domain
Family:SAP domain
84c2do1A_



not modelled 8.2 11
PDB header:gene regulation
Chain: A: PDB Molecule:nuclear protein hcc-1;
PDBTitle: solution structure of the sap domain of human nuclear2 protein hcc-1
85d1hqsa_



not modelled 8.1 13
Fold:Isocitrate/Isopropylmalate dehydrogenase-like
Superfamily:Isocitrate/Isopropylmalate dehydrogenase-like
Family:Dimeric isocitrate & isopropylmalate dehydrogenases
86d1k75a_



not modelled 8.0 23
Fold:ALDH-like
Superfamily:ALDH-like
Family:L-histidinol dehydrogenase HisD
87c1zrjA_



not modelled 7.9 11
PDB header:dna binding protein
Chain: A: PDB Molecule:e1b-55kda-associated protein 5 isoform c;
PDBTitle: solution structure of the sap domain of human e1b-55kda-2 associated protein 5 isoform c
88d1qe5a_



not modelled 7.8 12
Fold:Phosphorylase/hydrolase-like
Superfamily:Purine and uridine phosphorylases
Family:Purine and uridine phosphorylases
89d1o98a1



not modelled 7.7 16
Fold:2,3-Bisphosphoglycerate-independent phosphoglycerate mutase, substrate-binding domain
Superfamily:2,3-Bisphosphoglycerate-independent phosphoglycerate mutase, substrate-binding domain
Family:2,3-Bisphosphoglycerate-independent phosphoglycerate mutase, substrate-binding domain
90d1g2oa_



not modelled 7.6 14
Fold:Phosphorylase/hydrolase-like
Superfamily:Purine and uridine phosphorylases
Family:Purine and uridine phosphorylases
91c3dnfB_



not modelled 7.2 19
PDB header:oxidoreductase
Chain: B: PDB Molecule:4-hydroxy-3-methylbut-2-enyl diphosphate reductase;
PDBTitle: structure of (e)-4-hydroxy-3-methyl-but-2-enyl diphosphate reductase,2 the terminal enzyme of the non-mevalonate pathway
92c2vveB_



not modelled 7.1 67
PDB header:viral protein
Chain: B: PDB Molecule:spike protein p1;
PDBTitle: crystal structure of the stem and receptor binding domain2 of the spike protein p1 from bacteriophage pm2
93c4au1A_



not modelled 7.1 11
PDB header:isomerase
Chain: A: PDB Molecule:precorrin-8x methylmutase;
PDBTitle: crystal structure of cobh (precorrin-8x methyl mutase)2 complexed with c5 desmethyl-hba
94c3c5yD_



not modelled 7.0 16
PDB header:isomerase
Chain: D: PDB Molecule:ribose/galactose isomerase;
PDBTitle: crystal structure of a putative ribose 5-phosphate isomerase2 (saro_3514) from novosphingobium aromaticivorans dsm at 1.81 a3 resolution
95c3opyG_



not modelled 7.0 12
PDB header:transferase
Chain: G: PDB Molecule:6-phosphofructo-1-kinase alpha-subunit;
PDBTitle: crystal structure of pichia pastoris phosphofructokinase in the t-2 state
96d2auna2



not modelled 7.0 20
Fold:Flavodoxin-like
Superfamily:Class I glutamine amidotransferase-like
Family:LD-carboxypeptidase A N-terminal domain-like
97d1gado2



not modelled 7.0 25
Fold:FwdE/GAPDH domain-like
Superfamily:Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain
Family:GAPDH-like
98d1saza2



not modelled 6.9 23
Fold:Ribonuclease H-like motif
Superfamily:Actin-like ATPase domain
Family:Acetokinase-like
99d1ltka_



not modelled 6.9 24
Fold:Phosphoglycerate kinase
Superfamily:Phosphoglycerate kinase
Family:Phosphoglycerate kinase

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Transmembrane helix prediction 

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