Phyre Home Retrieve Phyre Job Id
Emailmdejesus@rockefeller.edu
DescriptionRVBD3012c_(gatC)_3371441_3371740
DateThu Aug 8 16:20:18 BST 2019
Unique Job IDb53a16ded8092473
SequenceVSQISRDEVA ... Download FASTA
Job Typenormal
Job Expiry

Summary 

Top model
Image coloured by rainbow N → C terminus
Model dimensions (Å):X:50.439 Y:58.271 Z:40.120
Model (left) based on template c4wj3F_
Top template information
PDB header:ligase/rna
Chain: F: PDB Molecule:glutamyl-trna(gln) amidotransferase subunit c;
PDBTitle: crystal structure of the asparagine transamidosome from pseudomonas2 aeruginosa
Confidence and coverage
Confidence:100.0% Coverage: 97%
96 residues ( 97% of your sequence) have been modelled with 100.0% confidence by the single highest scoring template.
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Sequence analysis 

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Secondary structure and disorder prediction [Show] 

Domain analysis [Show] 

Detailed template information [Hide] 

 

#
Template Alignment Coverage3D Model Confidence
% i.d. Template Information
1c4wj3F_



100.0 31
PDB header:ligase/rna
Chain: F: PDB Molecule:glutamyl-trna(gln) amidotransferase subunit c;
PDBTitle: crystal structure of the asparagine transamidosome from pseudomonas2 aeruginosa
2d2f2ac1



100.0 36
Fold:Non-globular all-alpha subunits of globular proteins
Superfamily:Glu-tRNAGln amidotransferase C subunit
Family:Glu-tRNAGln amidotransferase C subunit
3c3h0mU_



100.0 34
PDB header:ligase
Chain: U: PDB Molecule:glutamyl-trna(gln) amidotransferase subunit c;
PDBTitle: structure of trna-dependent amidotransferase gatcab from2 aquifex aeolicus
4c3kfuJ_



99.9 31
PDB header:ligase/rna
Chain: J: PDB Molecule:glutamyl-trna(gln) amidotransferase subunit c;
PDBTitle: crystal structure of the transamidosome
5c4n0hF_



99.9 17
PDB header:ligase
Chain: F: PDB Molecule:glutamyl-trna(gln) amidotransferase subunit f,
PDBTitle: crystal structure of s. cerevisiae mitochondrial gatfab
6c3al0C_



99.3 30
PDB header:ligase/rna
Chain: C: PDB Molecule:glutamyl-trna(gln) amidotransferase subunit c,linker,
PDBTitle: crystal structure of the glutamine transamidosome from thermotoga2 maritima in the glutamylation state.
7c3o0rC_



53.3 17
PDB header:immune system/oxidoreductase
Chain: C: PDB Molecule:nitric oxide reductase subunit c;
PDBTitle: crystal structure of nitric oxide reductase from pseudomonas2 aeruginosa in complex with antibody fragment
8c2bvtB_



27.8 17
PDB header:hydrolase
Chain: B: PDB Molecule:beta-1,4-mannanase;
PDBTitle: the structure of a modular endo-beta-1,4-mannanase from cellulomonas2 fimi explains the product specificity of glycoside hydrolase family3 26 mannanases.
9c2lycA_



27.0 22
PDB header:protein binding
Chain: A: PDB Molecule:spindle and kinetochore-associated protein 1 homolog;
PDBTitle: structure of c-terminal domain of ska1
10c4xydB_



25.1 4
PDB header:oxidoreductase
Chain: B: PDB Molecule:norc-like protein;
PDBTitle: nitric oxide reductase from roseobacter denitrificans (rdnor)
11d1odza_



20.2 8
Fold:TIM beta/alpha-barrel
Superfamily:(Trans)glycosidases
Family:beta-glycanases
12c6ct6B_



19.2 24
PDB header:oxidoreductase
Chain: B: PDB Molecule:lactate dehydrogenase;
PDBTitle: crystal structure of lactate dehydrogenase from eimeria maxima with2 nadh and oxamate
13d1tuza_



16.3 13
Fold:EF Hand-like
Superfamily:EF-hand
Family:EF-hand modules in multidomain proteins
14c2aucC_



15.2 20
PDB header:membrane protein
Chain: C: PDB Molecule:myosin a tail interacting protein;
PDBTitle: structure of the plasmodium mtip-myoa complex, a key component of the2 parasite invasion motor
15c4c9yB_



14.6 14
PDB header:cell cycle
Chain: B: PDB Molecule:spindle and kinetochore-associated protein 1;
PDBTitle: structural basis for the microtubule binding of the human2 kinetochore ska complex
16c5g3qA_



13.9 23
PDB header:transferase
Chain: A: PDB Molecule:wnk1;
PDBTitle: crystal structure of a hypothetical domain in wnk1
17c3nepX_



13.1 13
PDB header:oxidoreductase
Chain: X: PDB Molecule:malate dehydrogenase;
PDBTitle: 1.55a resolution structure of malate dehydrogenase from salinibacter2 ruber
18d1yira2



11.8 15
Fold:alpha/beta-Hammerhead
Superfamily:Nicotinate/Quinolinate PRTase N-terminal domain-like
Family:Monomeric nicotinate phosphoribosyltransferase N-terminal domain-like
19c5tdyD_



11.1 11
PDB header:motor protein
Chain: D: PDB Molecule:flagellar motor switch protein flig;
PDBTitle: structure of cofolded flifc:flign complex from thermotoga maritima
20d1y7ta2



11.0 17
Fold:LDH C-terminal domain-like
Superfamily:LDH C-terminal domain-like
Family:Lactate & malate dehydrogenases, C-terminal domain
21d2fcea1



not modelled 10.7 19
Fold:EF Hand-like
Superfamily:EF-hand
Family:Calmodulin-like
22c5cuvB_



not modelled 10.6 13
PDB header:metal binding protein
Chain: B: PDB Molecule:acidocalcisomal pyrophosphatase;
PDBTitle: crystal structure of trypanosoma cruzi vacuolar soluble2 pyrophosphatases in apo form
23c5vt9A_



not modelled 10.3 17
PDB header:motor protein
Chain: A: PDB Molecule:myosin light chain tgmlc1;
PDBTitle: myosin light chain 1 and myoa complex
24d1izma_



not modelled 10.3 22
Fold:YgfB-like
Superfamily:YgfB-like
Family:YgfB-like
25c2amiA_



not modelled 10.0 14
PDB header:cell cycle
Chain: A: PDB Molecule:caltractin;
PDBTitle: solution structure of the calcium-loaded n-terminal sensor domain of2 centrin
26d1wrka1



not modelled 9.6 23
Fold:EF Hand-like
Superfamily:EF-hand
Family:Calmodulin-like
27c5wlmC_



not modelled 9.1 46
PDB header:de novo protein
Chain: C: PDB Molecule:helical bundle 4dh2;
PDBTitle: de novo design of polynuclear transition metal clusters in helix2 bundles-4dh2
28c5wlmD_



not modelled 9.1 46
PDB header:de novo protein
Chain: D: PDB Molecule:helical bundle 4dh2;
PDBTitle: de novo design of polynuclear transition metal clusters in helix2 bundles-4dh2
29c5wlmB_



not modelled 9.1 46
PDB header:de novo protein
Chain: B: PDB Molecule:helical bundle 4dh2;
PDBTitle: de novo design of polynuclear transition metal clusters in helix2 bundles-4dh2
30c5wlmA_



not modelled 9.1 46
PDB header:de novo protein
Chain: A: PDB Molecule:helical bundle 4dh2;
PDBTitle: de novo design of polynuclear transition metal clusters in helix2 bundles-4dh2
31c5wlkC_



not modelled 8.9 54
PDB header:de novo protein
Chain: C: PDB Molecule:helical bundle 4eh2;
PDBTitle: de novo design of polynuclear transition metal clusters in helix2 bundles-4eh2
32c5wlkB_



not modelled 8.9 54
PDB header:de novo protein
Chain: B: PDB Molecule:helical bundle 4eh2;
PDBTitle: de novo design of polynuclear transition metal clusters in helix2 bundles-4eh2
33c5wlkA_



not modelled 8.9 54
PDB header:de novo protein
Chain: A: PDB Molecule:helical bundle 4eh2;
PDBTitle: de novo design of polynuclear transition metal clusters in helix2 bundles-4eh2
34c5wlkD_



not modelled 8.9 54
PDB header:de novo protein
Chain: D: PDB Molecule:helical bundle 4eh2;
PDBTitle: de novo design of polynuclear transition metal clusters in helix2 bundles-4eh2
35c3korD_



not modelled 8.9 13
PDB header:transcription
Chain: D: PDB Molecule:possible trp repressor;
PDBTitle: crystal structure of a putative trp repressor from staphylococcus2 aureus
36c2fcdA_



not modelled 8.7 15
PDB header:cell cycle
Chain: A: PDB Molecule:myosin light chain 1;
PDBTitle: solution structure of n-lobe myosin light chain from2 saccharomices cerevisiae
37d1s6ja_



not modelled 8.6 20
Fold:EF Hand-like
Superfamily:EF-hand
Family:Calmodulin-like
38d2bvya2



not modelled 8.3 17
Fold:TIM beta/alpha-barrel
Superfamily:(Trans)glycosidases
Family:beta-glycanases
39c3jbhI_



not modelled 8.3 13
PDB header:contractile protein
Chain: I: PDB Molecule:myosin 2 essential light chain striated muscle;
PDBTitle: two heavy meromyosin interacting-heads motifs flexible docked into2 tarantula thick filament 3d-map allows in depth study of intra- and3 intermolecular interactions
40d1wlza1



not modelled 8.1 26
Fold:EF Hand-like
Superfamily:EF-hand
Family:EF-hand modules in multidomain proteins
41d1f54a_



not modelled 8.1 28
Fold:EF Hand-like
Superfamily:EF-hand
Family:Calmodulin-like
42d1jc2a_



not modelled 7.9 13
Fold:EF Hand-like
Superfamily:EF-hand
Family:Calmodulin-like
43c1jc2A_



not modelled 7.9 13
PDB header:structural protein
Chain: A: PDB Molecule:troponin c, skeletal muscle;
PDBTitle: complex of the c-domain of troponin c with residues 1-40 of2 troponin i
44c1wlzD_



not modelled 7.9 27
PDB header:unknown function
Chain: D: PDB Molecule:cap-binding protein complex interacting protein
PDBTitle: crystal structure of djbp fragment which was obtained by2 limited proteolysis
45c4cvoA_



not modelled 7.5 24
PDB header:hydrolase
Chain: A: PDB Molecule:dna excision repair protein ercc-6;
PDBTitle: crystal structure of the n-terminal colied-coil domain of human dna2 excision repair protein ercc-6
46d1sbqa_



not modelled 7.1 16
Fold:NagB/RpiA/CoA transferase-like
Superfamily:NagB/RpiA/CoA transferase-like
Family:Methenyltetrahydrofolate synthetase
47c1u3fA_



not modelled 7.1 16
PDB header:ligase
Chain: A: PDB Molecule:5,10-methenyltetrahydrofolate synthetase;
PDBTitle: structural and functional characterization of a 5,10-2 methenyltetrahydrofolate synthetase from mycoplasma3 pneumoniae (gi: 13508087)
48c2vx6A_



not modelled 7.0 18
PDB header:hydrolase
Chain: A: PDB Molecule:cellvibrio japonicus mannanase cjman26c;
PDBTitle: cellvibrio japonicus mannanase cjman26c gal1man4-bound form
49c1zmzA_



not modelled 7.0 13
PDB header:structural protein
Chain: A: PDB Molecule:centrin-2;
PDBTitle: solution structure of the n-terminal domain (m1-s98) of2 human centrin 2
50d1avsa_



not modelled 6.8 27
Fold:EF Hand-like
Superfamily:EF-hand
Family:Calmodulin-like
51d1cmga_



not modelled 6.7 27
Fold:EF Hand-like
Superfamily:EF-hand
Family:Calmodulin-like
52d3e9va1



not modelled 6.6 32
Fold:BTG domain-like
Superfamily:BTG domain-like
Family:BTG domain-like
53c5i2oA_



not modelled 6.5 10
PDB header:metal binding protein
Chain: A: PDB Molecule:ef-hand domain-containing protein d2;
PDBTitle: structure of ef-hand containing protein
54c2k7bA_



not modelled 6.5 23
PDB header:metal binding protein
Chain: A: PDB Molecule:calcium-binding protein 1;
PDBTitle: nmr structure of mg2+-bound cabp1 n-domain
55c2l2eA_



not modelled 6.5 25
PDB header:metal binding protein
Chain: A: PDB Molecule:calcium-binding protein ncs-1;
PDBTitle: solution nmr structure of myristoylated ncs1p in apo form
56c4wjbB_



not modelled 6.4 25
PDB header:hydrolase
Chain: B: PDB Molecule:putative amidohydrolase/peptidase;
PDBTitle: x-ray crystal structure of a putative amidohydrolase/peptidase from2 burkholderia cenocepacia
57d1fw4a_



not modelled 6.3 27
Fold:EF Hand-like
Superfamily:EF-hand
Family:Calmodulin-like
58d1id3b_



not modelled 6.2 18
Fold:Histone-fold
Superfamily:Histone-fold
Family:Nucleosome core histones
59c3izcw_



not modelled 6.2 7
PDB header:ribosome
Chain: W: PDB Molecule:60s ribosomal protein rpl22 (l22e);
PDBTitle: localization of the large subunit ribosomal proteins into a 6.1 a2 cryo-em map of saccharomyces cerevisiae translating 80s ribosome
60d1n0yb_



not modelled 6.2 27
Fold:EF Hand-like
Superfamily:EF-hand
Family:Calmodulin-like
61c3zm8A_



not modelled 6.1 22
PDB header:hydrolase
Chain: A: PDB Molecule:gh26 endo-beta-1,4-mannanase;
PDBTitle: crystal structure of podospora anserina gh26-cbm352 beta-(1,4)-mannanase
62d1wdcc_



not modelled 6.1 23
Fold:EF Hand-like
Superfamily:EF-hand
Family:Calmodulin-like
63c5ve9B_



not modelled 6.0 21
PDB header:protein binding
Chain: B: PDB Molecule:microtubule-actin cross-linking factor 1, isoforms 1/2/3/5;
PDBTitle: structure of hacf7 ef1-ef2-gar domains
64d1tiza_



not modelled 5.9 20
Fold:EF Hand-like
Superfamily:EF-hand
Family:Calmodulin-like
65c2b1uA_



not modelled 5.9 24
PDB header:metal binding protein
Chain: A: PDB Molecule:calmodulin-like protein 5;
PDBTitle: solution structure of calmodulin-like skin protein c2 terminal domain
66c3iz5w_



not modelled 5.9 7
PDB header:ribosome
Chain: W: PDB Molecule:60s ribosomal protein l22 (l22e);
PDBTitle: localization of the large subunit ribosomal proteins into a 5.5 a2 cryo-em map of triticum aestivum translating 80s ribosome
67c4xpmA_



not modelled 5.9 27
PDB header:protein binding
Chain: A: PDB Molecule:protein meh1;
PDBTitle: crystal structure of ego-tc
68c3wdrA_



not modelled 5.9 22
PDB header:hydrolase
Chain: A: PDB Molecule:beta-mannanase;
PDBTitle: crystal structure of beta-mannanase from a symbiotic protist of the2 termite reticulitermes speratus complexed with gluco-manno-3 oligosaccharide
69c2oltB_



not modelled 5.8 19
PDB header:unknown function
Chain: B: PDB Molecule:hypothetical protein;
PDBTitle: crystal structure of a phou-like protein (so_3770) from shewanella2 oneidensis mr-1 at 2.00 a resolution
70c4okhC_



not modelled 5.7 17
PDB header:hydrolase
Chain: C: PDB Molecule:calpain-3;
PDBTitle: crystal structure of calpain-3 penta-ef-hand domain
71c2k2aA_



not modelled 5.7 20
PDB header:contractile protein
Chain: A: PDB Molecule:troponin c;
PDBTitle: solution structure of the apo c terminal domain of lethocerus troponin2 c isoform f1
72c6jbxB_



not modelled 5.6 12
PDB header:transcription/dna
Chain: B: PDB Molecule:fatty acid biosynthesis transcriptional regulator;
PDBTitle: crystal structure of streptococcus pneumoniae fabt in complex with dna
73c2m29A_



not modelled 5.5 23
PDB header:metal binding protein
Chain: A: PDB Molecule:calcium-binding protein 4;
PDBTitle: nmr structure of ca2+ bound cabp4 n-domain
74d1pzga2



not modelled 5.4 24
Fold:LDH C-terminal domain-like
Superfamily:LDH C-terminal domain-like
Family:Lactate & malate dehydrogenases, C-terminal domain
75c6e0oA_



not modelled 5.3 19
PDB header:transferase/rna
Chain: A: PDB Molecule:cgas/dncv-like nucleotidyltransferase in e. coli homolog;
PDBTitle: structure of elizabethkingia meningoseptica cdne cyclic dinucleotide2 synthase with pppa[3'-5']pa
76d1lcda_



not modelled 5.2 19
Fold:lambda repressor-like DNA-binding domains
Superfamily:lambda repressor-like DNA-binding domains
Family:GalR/LacI-like bacterial regulator
77d1g8ia_



not modelled 5.2 22
Fold:EF Hand-like
Superfamily:EF-hand
Family:Calmodulin-like
78d1m39a_



not modelled 5.2 23
Fold:EF Hand-like
Superfamily:EF-hand
Family:Calmodulin-like
79d1b8pa2



not modelled 5.1 14
Fold:LDH C-terminal domain-like
Superfamily:LDH C-terminal domain-like
Family:Lactate & malate dehydrogenases, C-terminal domain
80c2d58A_



not modelled 5.1 17
PDB header:metal binding protein
Chain: A: PDB Molecule:allograft inflammatory factor 1;
PDBTitle: human microglia-specific protein iba1
81c4pkfC_



not modelled 5.1 43
PDB header:lyase
Chain: C: PDB Molecule:tutf;
PDBTitle: benzylsuccinate synthase alpha-beta-gamma complex
82c3sluB_



not modelled 5.1 19
PDB header:hydrolase
Chain: B: PDB Molecule:m23 peptidase domain protein;
PDBTitle: crystal structure of nmb0315
83c6bp6A_



not modelled 5.0 22
PDB header:endocytosis
Chain: A: PDB Molecule:comm domain-containing protein 9;
PDBTitle: crystal structure of commd9 comm domain

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