Phyre Home Retrieve Phyre Job Id
Emailmdejesus@rockefeller.edu
DescriptionRVBD3013_(-)_3371825_3372481
DateThu Aug 8 16:20:18 BST 2019
Unique Job IDb247f2a2f42b52f0
SequenceVRSYLLRIEL ... Download FASTA
Job Typenormal
Job Expiry

Summary 

Top model
Image coloured by rainbow N → C terminus
Model dimensions (Å):X:24.219 Y:20.741 Z:38.323
Model (left) based on template c3ibwA_
Top template information
PDB header:transferase
Chain: A: PDB Molecule:gtp pyrophosphokinase;
PDBTitle: crystal structure of the act domain from gtp pyrophosphokinase of2 chlorobium tepidum. northeast structural genomics consortium target3 ctr148a
Confidence and coverage
Confidence: 98.4% Coverage: 32%
69 residues ( 32% of your sequence) have been modelled with 98.4% confidence by the single highest scoring template.
You may wish to submit your sequence to Phyrealarm. This will automatically scan your sequence every week for new potential templates as they appear in the Phyre2 library.
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Sequence analysis 

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Secondary structure and disorder prediction [Show] 

Domain analysis [Show] 

Detailed template information [Hide] 

 

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Template Alignment Coverage3D Model Confidence
% i.d. Template Information
1c3ibwA_



98.4 17
PDB header:transferase
Chain: A: PDB Molecule:gtp pyrophosphokinase;
PDBTitle: crystal structure of the act domain from gtp pyrophosphokinase of2 chlorobium tepidum. northeast structural genomics consortium target3 ctr148a
2d1sc6a3



97.5 20
Fold:Ferredoxin-like
Superfamily:ACT-like
Family:Phosphoglycerate dehydrogenase, regulatory (C-terminal) domain
3d1ygya3



97.4 29
Fold:Ferredoxin-like
Superfamily:ACT-like
Family:Phosphoglycerate dehydrogenase, regulatory (C-terminal) domain
4d1u8sa2



97.3 14
Fold:Ferredoxin-like
Superfamily:ACT-like
Family:Glycine cleavage system transcriptional repressor
5c1u8sB_



97.0 13
PDB header:transcription
Chain: B: PDB Molecule:glycine cleavage system transcriptional
PDBTitle: crystal structure of putative glycine cleavage system2 transcriptional repressor
6c2lvwA_



96.9 9
PDB header:transferase
Chain: A: PDB Molecule:acetolactate synthase isozyme 1 small subunit;
PDBTitle: solution nmr studies of the dimeric regulatory subunit ilvn of the2 e.coli acetohydroxyacid synthase i (ahas i)
7c3n0vD_



96.7 9
PDB header:hydrolase
Chain: D: PDB Molecule:formyltetrahydrofolate deformylase;
PDBTitle: crystal structure of a formyltetrahydrofolate deformylase (pp_0327)2 from pseudomonas putida kt2440 at 2.25 a resolution
8d1zpva1



96.6 16
Fold:Ferredoxin-like
Superfamily:ACT-like
Family:SP0238-like
9c5uscB_



96.1 14
PDB header:hydrolase
Chain: B: PDB Molecule:prephenate dehydrogenase;
PDBTitle: crystal structure of prephenate dehydrogenase tyra from bacillus2 anthracis in complex with nad and l-tyrosine
10c6dzsD_



96.0 25
PDB header:oxidoreductase
Chain: D: PDB Molecule:homoserine dehydrogenase;
PDBTitle: mycobacterial homoserine dehydrogenase thra in complex with nadp
11d2f06a2



95.8 21
Fold:Ferredoxin-like
Superfamily:ACT-like
Family:BT0572-like
12c2nyiB_



95.6 19
PDB header:structural genomics, unknown function
Chain: B: PDB Molecule:unknown protein;
PDBTitle: crystal structure of an unknown protein from galdieria sulphuraria
13d1u8sa1



95.2 13
Fold:Ferredoxin-like
Superfamily:ACT-like
Family:Glycine cleavage system transcriptional repressor
14c1tdjA_



95.1 14
PDB header:allostery
Chain: A: PDB Molecule:biosynthetic threonine deaminase;
PDBTitle: threonine deaminase (biosynthetic) from e. coli
15d2f1fa1



94.3 16
Fold:Ferredoxin-like
Superfamily:ACT-like
Family:IlvH-like
16d2f06a1



94.0 23
Fold:Ferredoxin-like
Superfamily:ACT-like
Family:BT0572-like
17c2f1fA_



93.9 18
PDB header:transferase
Chain: A: PDB Molecule:acetolactate synthase isozyme iii small subunit;
PDBTitle: crystal structure of the regulatory subunit of acetohydroxyacid2 synthase isozyme iii from e. coli
18c3o1lB_



93.9 16
PDB header:hydrolase
Chain: B: PDB Molecule:formyltetrahydrofolate deformylase;
PDBTitle: crystal structure of a formyltetrahydrofolate deformylase (pspto_4314)2 from pseudomonas syringae pv. tomato str. dc3000 at 2.20 a resolution
19c1ygyA_



92.8 28
PDB header:oxidoreductase
Chain: A: PDB Molecule:d-3-phosphoglycerate dehydrogenase;
PDBTitle: crystal structure of d-3-phosphoglycerate dehydrogenase from2 mycobacterium tuberculosis
20d2fgca2



91.9 18
Fold:Ferredoxin-like
Superfamily:ACT-like
Family:IlvH-like
21c2f06B_



not modelled 91.6 23
PDB header:structural genomics, unknown function
Chain: B: PDB Molecule:conserved hypothetical protein;
PDBTitle: crystal structure of protein bt0572 from bacteroides thetaiotaomicron
22c1y7pB_



not modelled 91.3 14
PDB header:structural genomics, unknown function
Chain: B: PDB Molecule:hypothetical protein af1403;
PDBTitle: 1.9 a crystal structure of a protein of unknown function2 af1403 from archaeoglobus fulgidus, probable metabolic3 regulator
23c3mtjA_



not modelled 91.3 25
PDB header:oxidoreductase
Chain: A: PDB Molecule:homoserine dehydrogenase;
PDBTitle: the crystal structure of a homoserine dehydrogenase from thiobacillus2 denitrificans to 2.15a
24d2pc6a2



not modelled 91.0 17
Fold:Ferredoxin-like
Superfamily:ACT-like
Family:IlvH-like
25c2fgcA_



not modelled 90.4 18
PDB header:transferase
Chain: A: PDB Molecule:acetolactate synthase, small subunit;
PDBTitle: crystal structure of acetolactate synthase- small subunit from2 thermotoga maritima
26c1ybaC_



not modelled 90.0 21
PDB header:oxidoreductase
Chain: C: PDB Molecule:d-3-phosphoglycerate dehydrogenase;
PDBTitle: the active form of phosphoglycerate dehydrogenase
27c3nrbD_



not modelled 89.3 20
PDB header:hydrolase
Chain: D: PDB Molecule:formyltetrahydrofolate deformylase;
PDBTitle: crystal structure of a formyltetrahydrofolate deformylase (puru,2 pp_1943) from pseudomonas putida kt2440 at 2.05 a resolution
28c3louB_



not modelled 89.1 14
PDB header:hydrolase
Chain: B: PDB Molecule:formyltetrahydrofolate deformylase;
PDBTitle: crystal structure of formyltetrahydrofolate deformylase (yp_105254.1)2 from burkholderia mallei atcc 23344 at 1.90 a resolution
29c3w7bB_



not modelled 83.2 29
PDB header:hydrolase
Chain: B: PDB Molecule:formyltetrahydrofolate deformylase;
PDBTitle: crystal structure of formyltetrahydrofolate deformylase from thermus2 thermophilus hb8
30c3luyA_



not modelled 82.8 19
PDB header:isomerase
Chain: A: PDB Molecule:probable chorismate mutase;
PDBTitle: putative chorismate mutase from bifidobacterium adolescentis
31c3e98B_



not modelled 80.5 15
PDB header:unknown function
Chain: B: PDB Molecule:gaf domain of unknown function;
PDBTitle: crystal structure of a gaf domain containing protein that belongs to2 pfam duf484 family (pa5279) from pseudomonas aeruginosa at 2.43 a3 resolution
32c2pc6C_



not modelled 80.2 17
PDB header:lyase
Chain: C: PDB Molecule:probable acetolactate synthase isozyme iii (small subunit);
PDBTitle: crystal structure of putative acetolactate synthase- small subunit2 from nitrosomonas europaea
33d1phza1



not modelled 80.2 14
Fold:Ferredoxin-like
Superfamily:ACT-like
Family:Phenylalanine metabolism regulatory domain
34c2qmxB_



not modelled 80.0 15
PDB header:ligase
Chain: B: PDB Molecule:prephenate dehydratase;
PDBTitle: the crystal structure of l-phe inhibited prephenate dehydratase from2 chlorobium tepidum tls
35c3k5pA_



not modelled 79.4 22
PDB header:oxidoreductase
Chain: A: PDB Molecule:d-3-phosphoglycerate dehydrogenase;
PDBTitle: crystal structure of amino acid-binding act: d-isomer specific 2-2 hydroxyacid dehydrogenase catalytic domain from brucella melitensis
36c3obiC_



not modelled 75.2 22
PDB header:hydrolase
Chain: C: PDB Molecule:formyltetrahydrofolate deformylase;
PDBTitle: crystal structure of a formyltetrahydrofolate deformylase (np_949368)2 from rhodopseudomonas palustris cga009 at 1.95 a resolution
37d1tdja2



not modelled 67.5 16
Fold:Ferredoxin-like
Superfamily:ACT-like
Family:Allosteric threonine deaminase C-terminal domain
38c4qprA_



not modelled 67.2 17
PDB header:transferase
Chain: A: PDB Molecule:sensor protein kdpd;
PDBTitle: crystal structure of gaf domain of potassium sensor histidine kinase2 kdpd from escherichia coli
39c5xhxA_



not modelled 66.6 17
PDB header:transcription
Chain: A: PDB Molecule:helix-turn-helix transcriptional regulator;
PDBTitle: crystal structure of vqsr lbd domain from pseudomonas aeruginosa
40d2qmwa2



not modelled 64.6 13
Fold:Ferredoxin-like
Superfamily:ACT-like
Family:Phenylalanine metabolism regulatory domain
41c3mahA_



not modelled 57.9 11
PDB header:transferase
Chain: A: PDB Molecule:aspartokinase;
PDBTitle: a putative c-terminal regulatory domain of aspartate kinase from2 porphyromonas gingivalis w83.
42c2dtjA_



not modelled 50.3 14
PDB header:transferase
Chain: A: PDB Molecule:aspartokinase;
PDBTitle: crystal structure of regulatory subunit of aspartate kinase2 from corynebacterium glutamicum
43c3mwbA_



not modelled 45.4 16
PDB header:lyase
Chain: A: PDB Molecule:prephenate dehydratase;
PDBTitle: the crystal structure of prephenate dehydratase in complex with l-phe2 from arthrobacter aurescens to 2.0a
44d1tdja3



not modelled 38.7 32
Fold:Ferredoxin-like
Superfamily:ACT-like
Family:Allosteric threonine deaminase C-terminal domain
45c3l76B_



not modelled 37.3 20
PDB header:transferase
Chain: B: PDB Molecule:aspartokinase;
PDBTitle: crystal structure of aspartate kinase from synechocystis
46c5jk5A_



not modelled 32.6 13
PDB header:oxidoreductase
Chain: A: PDB Molecule:phenylalanine-4-hydroxylase;
PDBTitle: phenylalanine hydroxylase from dictyostelium - bh2 complex
47c2mdaB_



not modelled 32.0 27
PDB header:oxidoreductase
Chain: B: PDB Molecule:tyrosine 3-monooxygenase;
PDBTitle: the solution structure of the regulatory domain of tyrosine2 hydroxylase
48c2vjwA_



not modelled 31.9 13
PDB header:hydrolase
Chain: A: PDB Molecule:gaf family protein;
PDBTitle: crystal structure of the second gaf domain of devs from2 mycobacterium smegmatis
49c3eeaB_



not modelled 30.7 15
PDB header:structural genomics, unknown function
Chain: B: PDB Molecule:gaf domain/hd domain protein;
PDBTitle: the crystal structure of the gaf domain/hd domain protein2 from geobacter sulfurreducens
50d1mw7a_



not modelled 28.5 14
Fold:YebC-like
Superfamily:YebC-like
Family:YebC-like
51d2c0ga1



not modelled 27.9 40
Fold:ERP29 C domain-like
Superfamily:ERP29 C domain-like
Family:ERP29 C domain-like
52c4f3qA_



not modelled 26.5 13
PDB header:transcription
Chain: A: PDB Molecule:transcriptional regulatory protein cbu_1566;
PDBTitle: structure of a yebc family protein (cbu_1566) from coxiella burnetii
53d1rwua_



not modelled 25.7 10
Fold:Ferredoxin-like
Superfamily:YbeD/HP0495-like
Family:YbeD-like
54c1rwuA_



not modelled 25.7 10
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:hypothetical upf0250 protein ybed;
PDBTitle: solution structure of conserved protein ybed from e. coli
55d2hmfa2



not modelled 25.1 24
Fold:Ferredoxin-like
Superfamily:ACT-like
Family:Aspartokinase allosteric domain-like
56c2k4mA_



not modelled 24.4 17
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:upf0146 protein mth_1000;
PDBTitle: solution nmr structure of m. thermoautotrophicum protein mth_1000,2 northeast structural genomics consortium target tr8
57c3ci6B_



not modelled 24.2 9
PDB header:transferase
Chain: B: PDB Molecule:phosphoenolpyruvate-protein phosphotransferase;
PDBTitle: crystal structure of the gaf domain from acinetobacter2 phosphoenolpyruvate-protein phosphotransferase
58c3bfrA_



not modelled 24.0 11
PDB header:oxidoreductase
Chain: A: PDB Molecule:superoxide dismutase [mn];
PDBTitle: the crystal structure of sod2 from saccharomyces cerevisiae
59d1m0sa2



not modelled 23.5 19
Fold:Ferredoxin-like
Superfamily:D-ribose-5-phosphate isomerase (RpiA), lid domain
Family:D-ribose-5-phosphate isomerase (RpiA), lid domain
60d1g7da_



not modelled 23.3 47
Fold:ERP29 C domain-like
Superfamily:ERP29 C domain-like
Family:ERP29 C domain-like
61d1o8ba2



not modelled 23.2 24
Fold:Ferredoxin-like
Superfamily:D-ribose-5-phosphate isomerase (RpiA), lid domain
Family:D-ribose-5-phosphate isomerase (RpiA), lid domain
62c4br6B_



not modelled 22.8 9
PDB header:oxidoreductase
Chain: B: PDB Molecule:superoxide dismutase;
PDBTitle: crystal structure of chaetomium thermophilum mnsod
63c2jsxA_



not modelled 21.4 20
PDB header:chaperone
Chain: A: PDB Molecule:protein napd;
PDBTitle: solution structure of the e. coli tat proofreading2 chaperone protein napd
64c2yy3B_



not modelled 19.5 16
PDB header:translation
Chain: B: PDB Molecule:elongation factor 1-beta;
PDBTitle: crystal structure of translation elongation factor ef-1 beta from2 pyrococcus horikoshii
65c4c7uB_



not modelled 18.7 11
PDB header:oxidoreductase
Chain: B: PDB Molecule:superoxide dismutase [mn] 1, mitochondrial;
PDBTitle: crystal structure of manganese superoxide dismutase from arabidopsis2 thaliana
66d1uerc2



not modelled 15.9 12
Fold:Fe,Mn superoxide dismutase (SOD), C-terminal domain
Superfamily:Fe,Mn superoxide dismutase (SOD), C-terminal domain
Family:Fe,Mn superoxide dismutase (SOD), C-terminal domain
67c4bwiA_



not modelled 15.8 12
PDB header:transferase
Chain: A: PDB Molecule:phytochrome-like protein cph2;
PDBTitle: structure of the phytochrome cph2 from synechocystis sp. pcc6803
68d2hmfa3



not modelled 15.8 15
Fold:Ferredoxin-like
Superfamily:ACT-like
Family:Aspartokinase allosteric domain-like
69c5aweA_



not modelled 14.1 26
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:putative acetoin utilization protein, acetoin
PDBTitle: crystal structure of a hypothetical protein, ttha0829 from thermus2 thermophilus hb8, composed of cystathionine-beta-synthase (cbs) and3 aspartate-kinase chorismate-mutase tyra (act) domains
70c4lubA_



not modelled 13.8 11
PDB header:lyase
Chain: A: PDB Molecule:putative prephenate dehydratase;
PDBTitle: x-ray structure of prephenate dehydratase from streptococcus mutans
71d1idsa2



not modelled 13.8 16
Fold:Fe,Mn superoxide dismutase (SOD), C-terminal domain
Superfamily:Fe,Mn superoxide dismutase (SOD), C-terminal domain
Family:Fe,Mn superoxide dismutase (SOD), C-terminal domain
72c1lkzB_



not modelled 13.6 26
PDB header:isomerase
Chain: B: PDB Molecule:ribose 5-phosphate isomerase a;
PDBTitle: crystal structure of d-ribose-5-phosphate isomerase (rpia) from2 escherichia coli.
73d1mnga2



not modelled 13.0 18
Fold:Fe,Mn superoxide dismutase (SOD), C-terminal domain
Superfamily:Fe,Mn superoxide dismutase (SOD), C-terminal domain
Family:Fe,Mn superoxide dismutase (SOD), C-terminal domain
74d1kona_



not modelled 12.8 22
Fold:YebC-like
Superfamily:YebC-like
Family:YebC-like
75c3s1tB_



not modelled 12.8 13
PDB header:transferase
Chain: B: PDB Molecule:aspartokinase;
PDBTitle: structure of the regulatory domain of aspartokinase (rv3709c; ak-beta)2 in complex with threonine from mycobacterium tuberculosis
76c3p96A_



not modelled 12.3 22
PDB header:hydrolase
Chain: A: PDB Molecule:phosphoserine phosphatase serb;
PDBTitle: crystal structure of phosphoserine phosphatase serb from mycobacterium2 avium, native form
77d2cdqa2



not modelled 11.8 12
Fold:Ferredoxin-like
Superfamily:ACT-like
Family:Aspartokinase allosteric domain-like
78c3h1sB_



not modelled 11.3 16
PDB header:oxidoreductase
Chain: B: PDB Molecule:superoxide dismutase;
PDBTitle: crystal structure of superoxide dismutase from francisella tularensis2 subsp. tularensis schu s4
79d2nyba2



not modelled 10.8 15
Fold:Fe,Mn superoxide dismutase (SOD), C-terminal domain
Superfamily:Fe,Mn superoxide dismutase (SOD), C-terminal domain
Family:Fe,Mn superoxide dismutase (SOD), C-terminal domain
80d1b06a2



not modelled 10.7 16
Fold:Fe,Mn superoxide dismutase (SOD), C-terminal domain
Superfamily:Fe,Mn superoxide dismutase (SOD), C-terminal domain
Family:Fe,Mn superoxide dismutase (SOD), C-terminal domain
81d1gv3a2



not modelled 10.4 10
Fold:Fe,Mn superoxide dismutase (SOD), C-terminal domain
Superfamily:Fe,Mn superoxide dismutase (SOD), C-terminal domain
Family:Fe,Mn superoxide dismutase (SOD), C-terminal domain
82c5uf2A_



not modelled 10.4 14
PDB header:isomerase
Chain: A: PDB Molecule:ribose-5-phosphate isomerase a;
PDBTitle: crystal structure of ribose 5 phosphate isomerase a from neisseria2 gonorrhoeae
83c3p01A_



not modelled 9.9 19
PDB header:signaling protein
Chain: A: PDB Molecule:two-component response regulator;
PDBTitle: crystal structure of two-component response regulator from nostoc sp.2 pcc 7120
84c3kwmC_



not modelled 9.4 19
PDB header:isomerase
Chain: C: PDB Molecule:ribose-5-phosphate isomerase a;
PDBTitle: crystal structure of ribose-5-isomerase a
85c3trcA_



not modelled 9.2 16
PDB header:transferase
Chain: A: PDB Molecule:phosphoenolpyruvate-protein phosphotransferase;
PDBTitle: structure of the gaf domain from a phosphoenolpyruvate-protein2 phosphotransferase (ptsp) from coxiella burnetii
86c4x84C_



not modelled 9.2 24
PDB header:isomerase
Chain: C: PDB Molecule:ribose-5-phosphate isomerase a;
PDBTitle: crystal structure of ribose-5-phosphate isomerase a from pseudomonas2 aeruginosa
87c2ns6A_



not modelled 9.1 27
PDB header:hydrolase
Chain: A: PDB Molecule:mobilization protein a;
PDBTitle: crystal structure of the minimal relaxase domain of moba from plasmid2 r1162
88c3fljA_



not modelled 9.1 25
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:uncharacterized protein conserved in bacteria with a
PDBTitle: crystal structure of uncharacterized protein conserved in bacteria2 with a cystatin-like fold (yp_168589.1) from silicibacter pomeroyi3 dss-3 at 2.00 a resolution
89d1wb8a2



not modelled 8.9 16
Fold:Fe,Mn superoxide dismutase (SOD), C-terminal domain
Superfamily:Fe,Mn superoxide dismutase (SOD), C-terminal domain
Family:Fe,Mn superoxide dismutase (SOD), C-terminal domain
90d2nv0a1



not modelled 8.6 23
Fold:Flavodoxin-like
Superfamily:Class I glutamine amidotransferase-like
Family:Class I glutamine amidotransferases (GAT)
91c5irdA_



not modelled 8.5 18
PDB header:unknown function
Chain: A: PDB Molecule:uncharacterized protein;
PDBTitle: solution structure of rv1466 from mycobacterium tuberculosis, a2 protein associated with [fe-s] complex assembly and repair - seattle3 structural genomics center for infectious disease target4 mytud.17486.a
92c2qybA_



not modelled 8.4 14
PDB header:membrane protein
Chain: A: PDB Molecule:membrane protein, putative;
PDBTitle: crystal structure of the gaf domain region of putative membrane2 protein from geobacter sulfurreducens pca
93c1s6cB_



not modelled 8.3 65
PDB header:transport protein
Chain: B: PDB Molecule:potassium voltage-gated channel subfamily d member 2;
PDBTitle: crystal structure of the complex between kchip1 and kv4.2 n1-30
94c4n8oA_



not modelled 7.7 24
PDB header:membrane protein
Chain: A: PDB Molecule:cell division protein ftsx;
PDBTitle: crystal structure of mycobacterial ftsx extracellular domain, bromide2 derivative
95d1pv8a_



not modelled 7.6 24
Fold:TIM beta/alpha-barrel
Superfamily:Aldolase
Family:5-aminolaevulinate dehydratase, ALAD (porphobilinogen synthase)
96d1zvpa2



not modelled 7.4 18
Fold:Ferredoxin-like
Superfamily:ACT-like
Family:VC0802-like
97d2p4ka2



not modelled 7.2 16
Fold:Fe,Mn superoxide dismutase (SOD), C-terminal domain
Superfamily:Fe,Mn superoxide dismutase (SOD), C-terminal domain
Family:Fe,Mn superoxide dismutase (SOD), C-terminal domain
98c6eepA_



not modelled 7.1 19
PDB header:isomerase
Chain: A: PDB Molecule:ribose-5-phosphate isomerase a;
PDBTitle: crystal structure of ribose-5-phosphate isomerase from legionella2 pneumophila
99c1nrnR_



not modelled 7.0 83
PDB header:serine proteinase/receptor
Chain: R: PDB Molecule:receptor based peptide nrs;
PDBTitle: crystallographic structures of thrombin complexed with2 thrombin receptor peptides: existence of expected and3 novel binding modes

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