Phyre Home Retrieve Phyre Job Id
Emailmdejesus@rockefeller.edu
DescriptionRVBD3015c_(-)_3374661_3375674
DateThu Aug 8 16:20:18 BST 2019
Unique Job ID1a55a7324e2001c7
SequenceVSVFATATGI ... Download FASTA
Job Typenormal
Job Expiry

Summary 

Top model
Image coloured by rainbow N → C terminus
Model dimensions (Å):X:52.781 Y:57.099 Z:63.712
Model (left) based on template c1u22A_
Top template information
PDB header:transferase
Chain: A: PDB Molecule:5-methyltetrahydropteroyltriglutamate--
PDBTitle: a. thaliana cobalamine independent methionine synthase
Confidence and coverage
Confidence:100.0% Coverage: 87%
294 residues ( 87% of your sequence) have been modelled with 100.0% confidence by the single highest scoring template.
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Sequence analysis 

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Secondary structure and disorder prediction [Show] 

Domain analysis [Show] 

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Template Alignment Coverage3D Model Confidence
% i.d. Template Information
1c1u22A_



100.0 22
PDB header:transferase
Chain: A: PDB Molecule:5-methyltetrahydropteroyltriglutamate--
PDBTitle: a. thaliana cobalamine independent methionine synthase
2c1t7lA_



100.0 21
PDB header:transferase
Chain: A: PDB Molecule:5-methyltetrahydropteroyltriglutamate--homocysteine
PDBTitle: crystal structure of cobalamin-independent methionine synthase from t.2 maritima
3c4ztxA_



100.0 21
PDB header:transferase
Chain: A: PDB Molecule:cobalamin-independent methionine synthase;
PDBTitle: neurospora crassa cobalamin-independent methionine synthase complexed2 with zn2+
4c3l7sA_



100.0 22
PDB header:transferase
Chain: A: PDB Molecule:5-methyltetrahydropteroyltriglutamate--homocysteine
PDBTitle: crystal structure of mete coordinated with zinc from streptococcus2 mutans
5c2nq5A_



100.0 23
PDB header:transferase
Chain: A: PDB Molecule:5-methyltetrahydropteroyltriglutamate--homocysteine
PDBTitle: crystal structure of methyltransferase from streptococcus mutans
6d1u1ha2



100.0 22
Fold:TIM beta/alpha-barrel
Superfamily:UROD/MetE-like
Family:Cobalamin-independent methionine synthase
7c3ppgA_



100.0 22
PDB header:transferase
Chain: A: PDB Molecule:5-methyltetrahydropteroyltriglutamate--homocysteine
PDBTitle: crystal structure of the candida albicans methionine synthase by2 surface entropy reduction, alanine variant with zinc
8c3rpdB_



100.0 19
PDB header:transferase
Chain: B: PDB Molecule:methionine synthase (b12-independent);
PDBTitle: the structure of a b12-independent methionine synthase from shewanella2 sp. w3-18-1 in complex with selenomethionine.
9c1ypxA_



100.0 18
PDB header:transferase
Chain: A: PDB Molecule:putative vitamin-b12 independent methionine synthase family
PDBTitle: crystal structure of the putative vitamin-b12 independent methionine2 synthase from listeria monocytogenes, northeast structural genomics3 target lmr13
10d1u1ha1



100.0 20
Fold:TIM beta/alpha-barrel
Superfamily:UROD/MetE-like
Family:Cobalamin-independent methionine synthase
11c4ay8B_



99.7 17
PDB header:transferase
Chain: B: PDB Molecule:methylcobalamin\: coenzyme m methyltransferase;
PDBTitle: semet-derivative of a methyltransferase from m. mazei
12d1j93a_



99.7 13
Fold:TIM beta/alpha-barrel
Superfamily:UROD/MetE-like
Family:Uroporphyrinogen decarboxylase, UROD
13c3cyvA_



99.6 13
PDB header:lyase
Chain: A: PDB Molecule:uroporphyrinogen decarboxylase;
PDBTitle: crystal structure of uroporphyrinogen decarboxylase from2 shigella flexineri: new insights into its catalytic3 mechanism
14c4exqA_



99.6 19
PDB header:biosynthetic protein
Chain: A: PDB Molecule:uroporphyrinogen decarboxylase;
PDBTitle: crystal structure of uroporphyrinogen decarboxylase (upd) from2 burkholderia thailandensis e264
15c1jpkA_



99.5 14
PDB header:lyase
Chain: A: PDB Molecule:uroporphyrinogen decarboxylase;
PDBTitle: gly156asp mutant of human urod, human uroporphyrinogen iii2 decarboxylase
16c4zr8B_



99.5 14
PDB header:lyase
Chain: B: PDB Molecule:uroporphyrinogen decarboxylase;
PDBTitle: structure of uroporphyrinogen decarboxylase from acinetobacter2 baumannii
17d1r3sa_



99.5 14
Fold:TIM beta/alpha-barrel
Superfamily:UROD/MetE-like
Family:Uroporphyrinogen decarboxylase, UROD
18c2infB_



99.5 10
PDB header:lyase
Chain: B: PDB Molecule:uroporphyrinogen decarboxylase;
PDBTitle: crystal structure of uroporphyrinogen decarboxylase from bacillus2 subtilis
19c2ejaB_



99.4 18
PDB header:lyase
Chain: B: PDB Molecule:uroporphyrinogen decarboxylase;
PDBTitle: crystal structure of uroporphyrinogen decarboxylase from2 aquifex aeolicus
20c3rhgA_



86.2 14
PDB header:hydrolase
Chain: A: PDB Molecule:putative phophotriesterase;
PDBTitle: crystal structure of amidohydrolase pmi1525 (target efi-500319) from2 proteus mirabilis hi4320
21d1ajza_



not modelled 83.1 14
Fold:TIM beta/alpha-barrel
Superfamily:Dihydropteroate synthetase-like
Family:Dihydropteroate synthetase
22c5odcD_



not modelled 83.0 15
PDB header:oxidoreductase
Chain: D: PDB Molecule:methyl-viologen reducing hydrogenase subunit d;
PDBTitle: heterodisulfide reductase / [nife]-hydrogenase complex from2 methanothermococcus thermolithotrophicus at 2.3 a resolution
23d1rvga_



not modelled 81.1 19
Fold:TIM beta/alpha-barrel
Superfamily:Aldolase
Family:Class II FBP aldolase
24d1gvfa_



not modelled 79.7 14
Fold:TIM beta/alpha-barrel
Superfamily:Aldolase
Family:Class II FBP aldolase
25c3qc3B_



not modelled 74.9 16
PDB header:isomerase
Chain: B: PDB Molecule:d-ribulose-5-phosphate-3-epimerase;
PDBTitle: crystal structure of a d-ribulose-5-phosphate-3-epimerase (np_954699)2 from homo sapiens at 2.20 a resolution
26d1h1ya_



not modelled 74.8 19
Fold:TIM beta/alpha-barrel
Superfamily:Ribulose-phoshate binding barrel
Family:D-ribulose-5-phosphate 3-epimerase
27c6omzA_



not modelled 74.7 16
PDB header:ligase
Chain: A: PDB Molecule:dihydropteroate synthase;
PDBTitle: crystal structure of dihydropteroate synthase from mycobacterium2 smegmatis with bound 6-hydroxymethylpterin-monophosphate
28d1tqxa_



not modelled 74.1 17
Fold:TIM beta/alpha-barrel
Superfamily:Ribulose-phoshate binding barrel
Family:D-ribulose-5-phosphate 3-epimerase
29c1tx2A_



not modelled 73.1 9
PDB header:transferase
Chain: A: PDB Molecule:dhps, dihydropteroate synthase;
PDBTitle: dihydropteroate synthetase, with bound inhibitor manic, from bacillus2 anthracis
30d1tx2a_



not modelled 73.1 9
Fold:TIM beta/alpha-barrel
Superfamily:Dihydropteroate synthetase-like
Family:Dihydropteroate synthetase
31c6ofuC_



not modelled 72.3 11
PDB header:lyase
Chain: C: PDB Molecule:ydji aldolase;
PDBTitle: x-ray crystal structure of the ydji aldolase from escherichia coli k12
32d1f6ya_



not modelled 72.0 14
Fold:TIM beta/alpha-barrel
Superfamily:Dihydropteroate synthetase-like
Family:Methyltetrahydrofolate-utiluzing methyltransferases
33d1rpxa_



not modelled 71.6 14
Fold:TIM beta/alpha-barrel
Superfamily:Ribulose-phoshate binding barrel
Family:D-ribulose-5-phosphate 3-epimerase
34c3k2gA_



not modelled 70.5 15
PDB header:resiniferatoxin binding protein
Chain: A: PDB Molecule:resiniferatoxin-binding, phosphotriesterase-
PDBTitle: crystal structure of a resiniferatoxin-binding protein from2 rhodobacter sphaeroides
35c3ct7E_



not modelled 70.3 16
PDB header:isomerase
Chain: E: PDB Molecule:d-allulose-6-phosphate 3-epimerase;
PDBTitle: crystal structure of d-allulose 6-phosphate 3-epimerase2 from escherichia coli k-12
36c3c52B_



not modelled 65.3 16
PDB header:lyase
Chain: B: PDB Molecule:fructose-bisphosphate aldolase;
PDBTitle: class ii fructose-1,6-bisphosphate aldolase from helicobacter pylori2 in complex with phosphoglycolohydroxamic acid, a competitive3 inhibitor
37c5u4nA_



not modelled 65.1 17
PDB header:lyase
Chain: A: PDB Molecule:fructose-1;
PDBTitle: crystal structure of a fructose-bisphosphate aldolase from neisseria2 gonorrhoeae
38c2vp8A_



not modelled 64.7 14
PDB header:transferase
Chain: A: PDB Molecule:dihydropteroate synthase 2;
PDBTitle: structure of mycobacterium tuberculosis rv1207
39d1tqja_



not modelled 64.4 12
Fold:TIM beta/alpha-barrel
Superfamily:Ribulose-phoshate binding barrel
Family:D-ribulose-5-phosphate 3-epimerase
40c2bmbA_



not modelled 58.2 14
PDB header:transferase
Chain: A: PDB Molecule:folic acid synthesis protein fol1;
PDBTitle: x-ray structure of the bifunctional 6-hydroxymethyl-7,8-2 dihydroxypterin pyrophosphokinase dihydropteroate synthase from3 saccharomyces cerevisiae
41c3tr9A_



not modelled 56.7 11
PDB header:transferase
Chain: A: PDB Molecule:dihydropteroate synthase;
PDBTitle: structure of a dihydropteroate synthase (folp) in complex with pteroic2 acid from coxiella burnetii
42c4mwaA_



not modelled 56.2 16
PDB header:oxidoreductase
Chain: A: PDB Molecule:4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase;
PDBTitle: 1.85 angstrom crystal structure of gcpe protein from bacillus2 anthracis
43c2iswB_



not modelled 55.7 17
PDB header:lyase
Chain: B: PDB Molecule:putative fructose-1,6-bisphosphate aldolase;
PDBTitle: structure of giardia fructose-1,6-biphosphate aldolase in2 complex with phosphoglycolohydroxamate
44c4nu7C_



not modelled 53.9 15
PDB header:isomerase
Chain: C: PDB Molecule:ribulose-phosphate 3-epimerase;
PDBTitle: 2.05 angstrom crystal structure of ribulose-phosphate 3-epimerase from2 toxoplasma gondii.
45c3q94B_



not modelled 52.1 20
PDB header:lyase
Chain: B: PDB Molecule:fructose-bisphosphate aldolase, class ii;
PDBTitle: the crystal structure of fructose 1,6-bisphosphate aldolase from2 bacillus anthracis str. 'ames ancestor'
46c3inpA_



not modelled 51.0 17
PDB header:isomerase
Chain: A: PDB Molecule:d-ribulose-phosphate 3-epimerase;
PDBTitle: 2.05 angstrom resolution crystal structure of d-ribulose-phosphate 3-2 epimerase from francisella tularensis.
47d1xrta2



not modelled 47.9 11
Fold:TIM beta/alpha-barrel
Superfamily:Metallo-dependent hydrolases
Family:Hydantoinase (dihydropyrimidinase), catalytic domain
48c5umfB_



not modelled 47.7 15
PDB header:isomerase
Chain: B: PDB Molecule:ribulose-phosphate 3-epimerase;
PDBTitle: crystal structure of a ribulose-phosphate 3-epimerase from neisseria2 gonorrhoeae with bound phosphate
49d1ad1a_



not modelled 46.2 12
Fold:TIM beta/alpha-barrel
Superfamily:Dihydropteroate synthetase-like
Family:Dihydropteroate synthetase
50c5uurA_



not modelled 45.1 16
PDB header:transferase
Chain: A: PDB Molecule:dihydropteroate synthase;
PDBTitle: xanthomonas albilineans dihydropteroate synthase with 4-aminobenzoic2 acid
51c2y5sA_



not modelled 43.2 15
PDB header:transferase
Chain: A: PDB Molecule:dihydropteroate synthase;
PDBTitle: crystal structure of burkholderia cenocepacia dihydropteroate2 synthase complexed with 7,8-dihydropteroate.
52c2yciX_



not modelled 43.1 17
PDB header:transferase
Chain: X: PDB Molecule:5-methyltetrahydrofolate corrinoid/iron sulfur protein
PDBTitle: methyltransferase native
53c5visB_



not modelled 43.1 17
PDB header:hydrolase,oxidoreductase
Chain: B: PDB Molecule:dihydropteroate synthase;
PDBTitle: 1.73 angstrom resolution crystal structure of dihydropteroate synthase2 (folp-smz_b27) from soil uncultured bacterium.
54c3nm3D_



not modelled 39.1 12
PDB header:transferase
Chain: D: PDB Molecule:thiamine biosynthetic bifunctional enzyme;
PDBTitle: the crystal structure of candida glabrata thi6, a bifunctional enzyme2 involved in thiamin biosyhthesis of eukaryotes
55c3ipwA_



not modelled 37.7 16
PDB header:hydrolase
Chain: A: PDB Molecule:hydrolase tatd family protein;
PDBTitle: crystal structure of hydrolase tatd family protein from entamoeba2 histolytica
56c5uswD_



not modelled 37.6 8
PDB header:transferase
Chain: D: PDB Molecule:dihydropteroate synthase;
PDBTitle: the crystal structure of 7,8-dihydropteroate synthase from vibrio2 fischeri es114
57c3f4cA_



not modelled 35.8 13
PDB header:hydrolase
Chain: A: PDB Molecule:organophosphorus hydrolase;
PDBTitle: crystal structure of organophosphorus hydrolase from geobacillus2 stearothermophilus strain 10, with glycerol bound
58c4djdD_



not modelled 34.3 11
PDB header:transferase/vitamin-binding protein
Chain: D: PDB Molecule:corrinoid/iron-sulfur protein small subunit;
PDBTitle: crystal structure of folate-free corrinoid iron-sulfur protein (cfesp)2 in complex with its methyltransferase (metr)
59c6o5lA_



not modelled 31.3 27
PDB header:dna binding protein
Chain: A: PDB Molecule:ppra;
PDBTitle: crystal structure of ppra filament from deinococcus peraridilitoris
60c3ceuA_



not modelled 29.8 21
PDB header:transferase
Chain: A: PDB Molecule:thiamine phosphate pyrophosphorylase;
PDBTitle: crystal structure of thiamine phosphate pyrophosphorylase (bt_0647)2 from bacteroides thetaiotaomicron. northeast structural genomics3 consortium target btr268
61c2d16B_



not modelled 29.0 18
PDB header:structural genomics, unknown function
Chain: B: PDB Molecule:hypothetical protein ph1918;
PDBTitle: crystal structure of ph1918 protein from pyrococcus horikoshii ot3
62d1gkma_



not modelled 28.9 18
Fold:L-aspartase-like
Superfamily:L-aspartase-like
Family:HAL/PAL-like
63c2h9aB_



not modelled 28.8 15
PDB header:oxidoreductase
Chain: B: PDB Molecule:co dehydrogenase/acetyl-coa synthase, iron-sulfur protein;
PDBTitle: corrinoid iron-sulfur protein
64d1vgga_



not modelled 26.5 27
Fold:Ta1353-like
Superfamily:Ta1353-like
Family:Ta1353-like
65c2ekmC_



not modelled 24.2 17
PDB header:structural genomics, unknown function
Chain: C: PDB Molecule:hypothetical protein st1511;
PDBTitle: structure of st1219 protein from sulfolobus tokodaii
66c3unvB_



not modelled 24.2 22
PDB header:lyase
Chain: B: PDB Molecule:admh;
PDBTitle: pantoea agglomerans phenylalanine aminomutase
67c6s7qG_



not modelled 23.7 18
PDB header:lyase
Chain: G: PDB Molecule:ergothionase;
PDBTitle: crystal structure of ergothioneine degrading enzyme ergothionase from2 treponema denticola in complex with desmethyl-ergothioneine sulfonic3 acid
68c6cluC_



not modelled 21.4 14
PDB header:antimicrobial protein
Chain: C: PDB Molecule:dihydropteroate synthase;
PDBTitle: staphylococcus aureus dihydropteroate synthase (sadhps) f17l e208k2 double mutant structure
69c2vefB_



not modelled 21.2 12
PDB header:transferase
Chain: B: PDB Molecule:dihydropteroate synthase;
PDBTitle: dihydropteroate synthase from streptococcus pneumoniae
70c2o6yF_



not modelled 20.7 22
PDB header:lyase
Chain: F: PDB Molecule:putative histidine ammonia-lyase;
PDBTitle: tyrosine ammonia-lyase from rhodobacter sphaeroides
71d2flia1



not modelled 20.7 10
Fold:TIM beta/alpha-barrel
Superfamily:Ribulose-phoshate binding barrel
Family:D-ribulose-5-phosphate 3-epimerase
72c2qveA_



not modelled 20.0 15
PDB header:transferase
Chain: A: PDB Molecule:tyrosine aminomutase;
PDBTitle: crystal structure of sgtam bound to mechanism based inhibitor
73d3bofa1



not modelled 19.1 14
Fold:TIM beta/alpha-barrel
Superfamily:Dihydropteroate synthetase-like
Family:Methyltetrahydrofolate-utiluzing methyltransferases
74d1rd5a_



not modelled 19.0 10
Fold:TIM beta/alpha-barrel
Superfamily:Ribulose-phoshate binding barrel
Family:Tryptophan biosynthesis enzymes
75c3k5pA_



not modelled 19.0 19
PDB header:oxidoreductase
Chain: A: PDB Molecule:d-3-phosphoglycerate dehydrogenase;
PDBTitle: crystal structure of amino acid-binding act: d-isomer specific 2-2 hydroxyacid dehydrogenase catalytic domain from brucella melitensis
76d1dosa_



not modelled 18.5 18
Fold:TIM beta/alpha-barrel
Superfamily:Aldolase
Family:Class II FBP aldolase
77c6mc8A_



not modelled 17.7 30
PDB header:dna binding protein
Chain: A: PDB Molecule:dna repair protein ppra;
PDBTitle: crystal structure of ppra dimer from deinococcus deserti
78c4exaD_



not modelled 17.4 16
PDB header:oxidoreductase
Chain: D: PDB Molecule:putative uncharacterized protein;
PDBTitle: crystal structure of the pa4992, the putative aldo-keto reductase from2 pseudomona aeruginosa
79d1ur4a_



not modelled 17.4 18
Fold:TIM beta/alpha-barrel
Superfamily:(Trans)glycosidases
Family:beta-glycanases
80c3i5aA_



not modelled 17.0 16
PDB header:signaling protein
Chain: A: PDB Molecule:response regulator/ggdef domain protein;
PDBTitle: crystal structure of full-length wpsr from pseudomonas syringae
81c3uowB_



not modelled 15.8 19
PDB header:ligase
Chain: B: PDB Molecule:gmp synthetase;
PDBTitle: crystal structure of pf10_0123, a gmp synthetase from plasmodium2 falciparum
82c5n2pA_



not modelled 15.7 8
PDB header:lyase
Chain: A: PDB Molecule:tryptophan synthase alpha chain;
PDBTitle: sulfolobus solfataricus tryptophan synthase a
83c2gl0A_



not modelled 14.9 14
PDB header:transferase
Chain: A: PDB Molecule:conserved hypothetical protein;
PDBTitle: structure of pae2307 in complex with adenosine
84c2eklA_



not modelled 14.7 18
PDB header:oxidoreductase
Chain: A: PDB Molecule:d-3-phosphoglycerate dehydrogenase;
PDBTitle: structure of st1218 protein from sulfolobus tokodaii
85d1o9ga_



not modelled 14.0 13
Fold:S-adenosyl-L-methionine-dependent methyltransferases
Superfamily:S-adenosyl-L-methionine-dependent methyltransferases
Family:rRNA methyltransferase AviRa
86c3pm6B_



not modelled 13.9 16
PDB header:lyase
Chain: B: PDB Molecule:putative fructose-bisphosphate aldolase;
PDBTitle: crystal structure of a putative fructose-1,6-biphosphate aldolase from2 coccidioides immitis solved by combined sad mr
87c4muzA_



not modelled 13.7 16
PDB header:lyase/lyase inhibitor
Chain: A: PDB Molecule:orotidine 5'-phosphate decarboxylase;
PDBTitle: crystal structure of orotidine 5'-monophosphate decarboxylase from2 archaeoglobus fulgidus complexed with inhibitor bmp
88c3exsB_



not modelled 13.7 6
PDB header:lyase
Chain: B: PDB Molecule:rmpd (hexulose-6-phosphate synthase);
PDBTitle: crystal structure of kgpdc from streptococcus mutans in2 complex with d-r5p
89c5yf1A_



not modelled 12.9 10
PDB header:transferase
Chain: A: PDB Molecule:carnosine n-methyltransferase;
PDBTitle: crystal structure of carnmt1 bound to carnosine and sfg
90c3ufbA_



not modelled 12.7 27
PDB header:transferase
Chain: A: PDB Molecule:type i restriction-modification system methyltransferase
PDBTitle: crystal structure of a modification subunit of a putative type i2 restriction enzyme from vibrio vulnificus yj016
91d1gvea_



not modelled 11.9 17
Fold:TIM beta/alpha-barrel
Superfamily:NAD(P)-linked oxidoreductase
Family:Aldo-keto reductases (NADP)
92c3jr2D_



not modelled 11.7 9
PDB header:biosynthetic protein
Chain: D: PDB Molecule:hexulose-6-phosphate synthase sgbh;
PDBTitle: x-ray crystal structure of the mg-bound 3-keto-l-gulonate-6-phosphate2 decarboxylase from vibrio cholerae o1 biovar el tor str. n16961
93c2rdtA_



not modelled 10.6 10
PDB header:oxidoreductase
Chain: A: PDB Molecule:hydroxyacid oxidase 1;
PDBTitle: crystal structure of human glycolate oxidase (go) in complex with cdst
94c4o1fB_



not modelled 10.1 14
PDB header:transferase
Chain: B: PDB Molecule:dihydropteroate synthase dhps;
PDBTitle: structure of a methyltransferase component in complex with thf2 involved in o-demethylation
95c5tw7E_



not modelled 9.0 23
PDB header:ligase
Chain: E: PDB Molecule:gmp synthase [glutamine-hydrolyzing];
PDBTitle: crystal structure of a gmp synthase (glutamine-hydrolyzing) from2 neisseria gonorrhoeae
96c1gpmD_



not modelled 9.0 21
PDB header:transferase (glutamine amidotransferase)
Chain: D: PDB Molecule:gmp synthetase;
PDBTitle: escherichia coli gmp synthetase complexed with amp and pyrophosphate
97d2q02a1



not modelled 9.0 12
Fold:TIM beta/alpha-barrel
Superfamily:Xylose isomerase-like
Family:IolI-like
98c5z79F_



not modelled 8.8 15
PDB header:transferase
Chain: F: PDB Molecule:hydroxymethyldihydropterin pyrophosphokinase-
PDBTitle: crystal structure analysis of the hppk-dhps in complex with substrates
99c5ybbA_



not modelled 8.8 17
PDB header:dna binding protein/dna
Chain: A: PDB Molecule:type i restriction-modification system methyltransferase
PDBTitle: structural basis underlying complex assembly andconformational2 transition of the type i r-m system

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