Phyre Home Retrieve Phyre Job Id
Emailmdejesus@rockefeller.edu
DescriptionRVBD3021c_(PPE47)_3379386_3380693
DateThu Aug 8 16:20:19 BST 2019
Unique Job ID122b4f0c37628f2f
SequenceVTAPVWLASP ... Download FASTA
Job Typenormal
Job Expiry

Summary 

Top model
Image coloured by rainbow N → C terminus
Model dimensions (Å):X:61.686 Y:72.050 Z:72.708
Model (left) based on template c5xfsB_
Top template information
PDB header:protein transport
Chain: B: PDB Molecule:ppe family protein ppe15;
PDBTitle: crystal structure of pe8-ppe15 in complex with espg5 from m.2 tuberculosis
Confidence and coverage
Confidence:100.0% Coverage: 39%
171 residues ( 39% of your sequence) have been modelled with 100.0% confidence by the single highest scoring template.
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Sequence analysis 

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#
Template Alignment Coverage3D Model Confidence
% i.d. Template Information
1c5xfsB_
100.0 39
PDB header:protein transport
Chain: B: PDB Molecule:ppe family protein ppe15;
PDBTitle: crystal structure of pe8-ppe15 in complex with espg5 from m.2 tuberculosis
2c2g38B_
100.0 29
PDB header:structural genomics, unknown function
Chain: B: PDB Molecule:ppe family protein;
PDBTitle: a pe/ppe protein complex from mycobacterium tuberculosis
3d2g38b1
100.0 29
Fold:Ferritin-like
Superfamily:PE/PPE dimer-like
Family:PPE
4c4xy3A_
100.0 21
PDB header:protein transport
Chain: A: PDB Molecule:esx-1 secretion-associated protein espb;
PDBTitle: structure of esx-1 secreted protein espb
5c4wj2A_
97.9 21
PDB header:unknown function
Chain: A: PDB Molecule:antigen mtb48;
PDBTitle: mycobacterial protein
6c2vs0B_
97.6 11
PDB header:cell invasion
Chain: B: PDB Molecule:virulence factor esxa;
PDBTitle: structural analysis of homodimeric staphylococcal aureus2 virulence factor esxa
7c3gvmA_
97.4 16
PDB header:viral protein
Chain: A: PDB Molecule:putative uncharacterized protein sag1039;
PDBTitle: structure of the homodimeric wxg-100 family protein from streptococcus2 agalactiae
8c4iogD_
97.4 14
PDB header:unknown function
Chain: D: PDB Molecule:secreted protein esxb;
PDBTitle: the crystal structure of a secreted protein esxb (wild-type, in p212 space group) from bacillus anthracis str. sterne
9c3zbhC_
97.1 16
PDB header:unknown function
Chain: C: PDB Molecule:esxa;
PDBTitle: geobacillus thermodenitrificans esxa crystal form i
10d1wa8a1
96.2 13
Fold:Ferritin-like
Superfamily:EsxAB dimer-like
Family:ESAT-6 like
11c4lwsB_
93.6 16
PDB header:unknown function
Chain: B: PDB Molecule:uncharacterized protein;
PDBTitle: esxa : esxb (semet) hetero-dimer from thermomonospora curvata
12d1wa8b1
92.7 14
Fold:Ferritin-like
Superfamily:EsxAB dimer-like
Family:ESAT-6 like
13c4lwsA_
92.0 10
PDB header:unknown function
Chain: A: PDB Molecule:uncharacterized protein;
PDBTitle: esxa : esxb (semet) hetero-dimer from thermomonospora curvata
14c4i0xA_
90.3 18
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:esat-6-like protein mab_3112;
PDBTitle: crystal structure of the mycobacterum abscessus esxef (mab_3112-2 mab_3113) complex
15c2kg7B_
84.5 17
PDB header:unknown function
Chain: B: PDB Molecule:esat-6-like protein esxh;
PDBTitle: structure and features of the complex formed by the tuberculosis2 virulence factors rv0287 and rv0288
16d1ui5a2
40.6 20
Fold:Tetracyclin repressor-like, C-terminal domain
Superfamily:Tetracyclin repressor-like, C-terminal domain
Family:Tetracyclin repressor-like, C-terminal domain
17c4i0xJ_
39.2 16
PDB header:structural genomics, unknown function
Chain: J: PDB Molecule:esat-6-like protein mab_3113;
PDBTitle: crystal structure of the mycobacterum abscessus esxef (mab_3112-2 mab_3113) complex
18c1bkvA_
19.5 50
PDB header:structural protein
Chain: A: PDB Molecule:t3-785;
PDBTitle: collagen
19c1bkvC_
18.5 50
PDB header:structural protein
Chain: C: PDB Molecule:t3-785;
PDBTitle: collagen
20c1bkvB_
18.5 50
PDB header:structural protein
Chain: B: PDB Molecule:t3-785;
PDBTitle: collagen
21d1zeea1
not modelled 18.5 54
Fold:Indolic compounds 2,3-dioxygenase-like
Superfamily:Indolic compounds 2,3-dioxygenase-like
Family:Indoleamine 2,3-dioxygenase-like
22d1dlpa1
not modelled 17.1 18
Fold:beta-Prism II
Superfamily:alpha-D-mannose-specific plant lectins
Family:alpha-D-mannose-specific plant lectins
23c5l85B_
not modelled 16.2 36
PDB header:signaling protein
Chain: B: PDB Molecule:nuclear fragile x mental retardation-interacting protein 1;
PDBTitle: solution structure of the complex between human znhit3 and nufip12 proteins
24c4xb6D_
not modelled 14.4 33
PDB header:transferase
Chain: D: PDB Molecule:alpha-d-ribose 1-methylphosphonate 5-phosphate c-p lyase;
PDBTitle: structure of the e. coli c-p lyase core complex
25c3sjrB_
not modelled 12.2 20
PDB header:structural genomics, unknown function
Chain: B: PDB Molecule:uncharacterized protein;
PDBTitle: crystal structure of conserved unkown function protein cv_1783 from2 chromobacterium violaceum atcc 12472
26c6aokA_
not modelled 11.8 25
PDB header:hydrolase
Chain: A: PDB Molecule:ceg4;
PDBTitle: crystal structure of legionella pneumophila effector ceg4 with n-2 terminal tev protease cleavage sequence
27d1vlfn1
not modelled 10.8 100
Fold:Prealbumin-like
Superfamily:Cna protein B-type domain
Family:Cna protein B-type domain
28c6cgjA_
not modelled 10.8 38
PDB header:hydrolase
Chain: A: PDB Molecule:effector protein lem4 (lpg1101);
PDBTitle: structure of the had domain of effector protein lem4 (lpg1101) from2 legionella pneumophila
29c4gyxC_
not modelled 10.4 45
PDB header:structural protein, blood clotting
Chain: C: PDB Molecule:type iii collagen fragment in a host peptide stabilized by
PDBTitle: the von willebrand factor a3 domain binding region of type iii2 collagen stabilized by the cysteine knot
30c2nvjA_
not modelled 10.0 40
PDB header:hydrolase
Chain: A: PDB Molecule:25mer peptide from vacuolar atp synthase subunit
PDBTitle: nmr structures of transmembrane segment from subunit a from2 the yeast proton v-atpase
31c1vytF_
not modelled 9.9 50
PDB header:transport protein
Chain: F: PDB Molecule:voltage-dependent l-type calcium channel
PDBTitle: beta3 subunit complexed with aid
32c4gyxA_
not modelled 9.8 45
PDB header:structural protein, blood clotting
Chain: A: PDB Molecule:type iii collagen fragment in a host peptide stabilized by
PDBTitle: the von willebrand factor a3 domain binding region of type iii2 collagen stabilized by the cysteine knot
33c4gyxB_
not modelled 9.8 45
PDB header:structural protein, blood clotting
Chain: B: PDB Molecule:type iii collagen fragment in a host peptide stabilized by
PDBTitle: the von willebrand factor a3 domain binding region of type iii2 collagen stabilized by the cysteine knot
34c2ahmG_
not modelled 9.3 24
PDB header:viral protein, replication
Chain: G: PDB Molecule:replicase polyprotein 1ab, heavy chain;
PDBTitle: crystal structure of sars-cov super complex of non-structural2 proteins: the hexadecamer
35c2y5tG_
not modelled 9.0 83
PDB header:immune system
Chain: G: PDB Molecule:c1;
PDBTitle: crystal structure of the pathogenic autoantibody ciic1 in complex with2 the triple-helical c1 peptide
36c1bzgA_
not modelled 9.0 14
PDB header:hormone
Chain: A: PDB Molecule:parathyroid hormone-related protein;
PDBTitle: the solution structure of human parathyroid hormone-related2 protein (1-34) in near-physiological solution, nmr, 303 structures
37c2y5tE_
not modelled 8.4 83
PDB header:immune system
Chain: E: PDB Molecule:c1;
PDBTitle: crystal structure of the pathogenic autoantibody ciic1 in complex with2 the triple-helical c1 peptide
38c2y5tF_
not modelled 7.6 83
PDB header:immune system
Chain: F: PDB Molecule:c1;
PDBTitle: crystal structure of the pathogenic autoantibody ciic1 in complex with2 the triple-helical c1 peptide
39c2iu1A_
not modelled 7.5 28
PDB header:transcription
Chain: A: PDB Molecule:eukaryotic translation initiation factor 5;
PDBTitle: crystal structure of eif5 c-terminal domain
40c2f6aJ_
not modelled 7.4 71
PDB header:cell adhesion/structural protein
Chain: J: PDB Molecule:collagen;
PDBTitle: collagen adhesin and collagen complex structure
41c2lkqA_
not modelled 7.3 44
PDB header:immune system
Chain: A: PDB Molecule:immunoglobulin lambda-like polypeptide 1;
PDBTitle: nmr structure of the lambda 5 22-45 peptide
42c2wuhD_
not modelled 7.1 83
PDB header:receptor/peptide
Chain: D: PDB Molecule:collagen peptide;
PDBTitle: crystal structure of the ddr2 discoidin domain bound to a2 triple-helical collagen peptide
43c6a0aA_
not modelled 7.1 63
PDB header:structural protein
Chain: A: PDB Molecule:collagen type iii peptide;
PDBTitle: structure of a triple-helix region of human collagen type iii
44c2f6aF_
not modelled 7.1 71
PDB header:cell adhesion/structural protein
Chain: F: PDB Molecule:collagen;
PDBTitle: collagen adhesin and collagen complex structure
45c2f6aE_
not modelled 7.1 71
PDB header:cell adhesion/structural protein
Chain: E: PDB Molecule:collagen;
PDBTitle: collagen adhesin and collagen complex structure
46c2f6aI_
not modelled 7.1 71
PDB header:cell adhesion/structural protein
Chain: I: PDB Molecule:collagen;
PDBTitle: collagen adhesin and collagen complex structure
47c2f6aG_
not modelled 7.1 71
PDB header:cell adhesion/structural protein
Chain: G: PDB Molecule:collagen;
PDBTitle: collagen adhesin and collagen complex structure
48c2f6aH_
not modelled 7.1 71
PDB header:cell adhesion/structural protein
Chain: H: PDB Molecule:collagen;
PDBTitle: collagen adhesin and collagen complex structure
49c5hl8B_
not modelled 7.0 30
PDB header:protein transport
Chain: B: PDB Molecule:type ii secretion system protein l;
PDBTitle: 1.93 angstrom resolution crystal structure of a pullulanase-specific2 type ii secretion system integral cytoplasmic membrane protein gspl3 (c-terminal fragment; residues 309-397) from klebsiella pneumoniae4 subsp. pneumoniae ntuh-k2044
50c5uc0B_
not modelled 6.9 100
PDB header:hydrolase
Chain: B: PDB Molecule:uncharacterized protein cog5400;
PDBTitle: crystal structure of beta-barrel-like, uncharacterized protein of2 cog5400 from brucella abortus
51c2fulE_
not modelled 6.9 28
PDB header:translation
Chain: E: PDB Molecule:eukaryotic translation initiation factor 5;
PDBTitle: crystal structure of the c-terminal domain of s. cerevisiae eif5
52c5vmoB_
not modelled 6.9 50
PDB header:viral protein/apoptosis
Chain: B: PDB Molecule:bcl-2 interacting mediator of cell death;
PDBTitle: crystal structure of grouper iridovirus giv66:bim complex
53c2wuhC_
not modelled 6.8 83
PDB header:receptor/peptide
Chain: C: PDB Molecule:collagen peptide;
PDBTitle: crystal structure of the ddr2 discoidin domain bound to a2 triple-helical collagen peptide
54c2wuhB_
not modelled 6.8 83
PDB header:receptor/peptide
Chain: B: PDB Molecule:collagen peptide;
PDBTitle: crystal structure of the ddr2 discoidin domain bound to a2 triple-helical collagen peptide
55c1vytE_
not modelled 6.7 50
PDB header:transport protein
Chain: E: PDB Molecule:voltage-dependent l-type calcium channel
PDBTitle: beta3 subunit complexed with aid
56c2kg7A_
not modelled 6.6 47
PDB header:unknown function
Chain: A: PDB Molecule:uncharacterized protein esxg (pe family protein);
PDBTitle: structure and features of the complex formed by the tuberculosis2 virulence factors rv0287 and rv0288
57c6a0cB_
not modelled 6.6 63
PDB header:structural protein
Chain: B: PDB Molecule:collagen type iii peptide;
PDBTitle: structure of a triple-helix region of human collagen type iii
58c2iunD_
not modelled 6.6 50
PDB header:viral protein
Chain: D: PDB Molecule:avian adenovirus celo long fibre;
PDBTitle: structure of the c-terminal head domain of the avian adenovirus celo2 long fibre (p21 crystal form)
59c3ub0D_
not modelled 6.6 20
PDB header:replication
Chain: D: PDB Molecule:non-structural protein 6, nsp6,;
PDBTitle: crystal structure of the nonstructural protein 7 and 8 complex of2 feline coronavirus
60c6nbiP_
not modelled 6.4 60
PDB header:signaling protein
Chain: P: PDB Molecule:long-acting parathyroid hormone analog;
PDBTitle: cryo-em structure of parathyroid hormone receptor type 1 in complex2 with a long-acting parathyroid hormone analog and g protein
61c5dn4A_
not modelled 6.4 43
PDB header:hydrolase
Chain: A: PDB Molecule:peptidoglycan hydrolase flgj;
PDBTitle: structure of the glycoside hydrolase domain from salmonella2 typhimurium flgj
62c3h6pB_
not modelled 6.4 47
PDB header:structural genomics, unknown function
Chain: B: PDB Molecule:esat-6 like protein esxs;
PDBTitle: crystal structure of rv3019c-rv3020c from mycobacterium tuberculosis
63c1t0jC_
not modelled 6.4 43
PDB header:signaling protein
Chain: C: PDB Molecule:voltage-dependent l-type calcium channel alpha-1c subunit;
PDBTitle: crystal structure of a complex between voltage-gated calcium channel2 beta2a subunit and a peptide of the alpha1c subunit
64c2drxB_
not modelled 6.3 83
PDB header:structural protein
Chain: B: PDB Molecule:collagen like peptide;
PDBTitle: structure analysis of (pog)4-(log)2-(pog)4
65c4dexB_
not modelled 6.3 38
PDB header:transport protein
Chain: B: PDB Molecule:voltage-dependent n-type calcium channel subunit alpha-1b;
PDBTitle: crystal structure of the voltage dependent calcium channel beta-22 subunit in complex with the cav2.2 i-ii linker.
66c2drxA_
not modelled 6.2 83
PDB header:structural protein
Chain: A: PDB Molecule:collagen like peptide;
PDBTitle: structure analysis of (pog)4-(log)2-(pog)4
67d1fcda3
not modelled 6.2 23
Fold:CO dehydrogenase flavoprotein C-domain-like
Superfamily:FAD/NAD-linked reductases, dimerisation (C-terminal) domain
Family:FAD/NAD-linked reductases, dimerisation (C-terminal) domain
68c6a0aB_
not modelled 6.1 83
PDB header:structural protein
Chain: B: PDB Molecule:collagen type iii peptide;
PDBTitle: structure of a triple-helix region of human collagen type iii
69c6a0aC_
not modelled 6.1 83
PDB header:structural protein
Chain: C: PDB Molecule:collagen type iii peptide;
PDBTitle: structure of a triple-helix region of human collagen type iii
70c2drxC_
not modelled 6.0 83
PDB header:structural protein
Chain: C: PDB Molecule:collagen like peptide;
PDBTitle: structure analysis of (pog)4-(log)2-(pog)4
71c2drtB_
not modelled 5.9 83
PDB header:structural protein
Chain: B: PDB Molecule:collagen like peptide;
PDBTitle: structure analysis of (pog)4-log-(pog)5
72c2drtA_
not modelled 5.9 83
PDB header:structural protein
Chain: A: PDB Molecule:collagen like peptide;
PDBTitle: structure analysis of (pog)4-log-(pog)5
73c6fxoA_
not modelled 5.9 67
PDB header:hydrolase
Chain: A: PDB Molecule:bifunctional autolysin;
PDBTitle: crystal structure of major bifunctional autolysin
74c1qsuC_
not modelled 5.9 83
PDB header:structural protein
Chain: C: PDB Molecule:protein ((pro-hyp-gly)4- glu-lys-gly(pro-hyp-gly)5);
PDBTitle: crystal structure of the triple-helical collagen-like peptide, (pro-2 hyp-gly)4-glu-lys-gly(pro-hyp-gly)5
75c2drtC_
not modelled 5.8 83
PDB header:structural protein
Chain: C: PDB Molecule:collagen like peptide;
PDBTitle: structure analysis of (pog)4-log-(pog)5
76c3ponB_
not modelled 5.8 55
PDB header:unknown function
Chain: B: PDB Molecule:mbl collagen-like peptide;
PDBTitle: crystal structure of mbl collagen-like peptide
77c3ponA_
not modelled 5.8 55
PDB header:unknown function
Chain: A: PDB Molecule:mbl collagen-like peptide;
PDBTitle: crystal structure of mbl collagen-like peptide
78c3pobB_
not modelled 5.8 55
PDB header:hydrolase
Chain: B: PDB Molecule:mbl collagen-like peptide;
PDBTitle: crystal structure of masp-1 cub2 domain in complex with the collagen-2 like domain of mbl
79c3pobC_
not modelled 5.8 55
PDB header:hydrolase
Chain: C: PDB Molecule:mbl collagen-like peptide;
PDBTitle: crystal structure of masp-1 cub2 domain in complex with the collagen-2 like domain of mbl
80c3pobD_
not modelled 5.8 55
PDB header:hydrolase
Chain: D: PDB Molecule:mbl collagen-like peptide;
PDBTitle: crystal structure of masp-1 cub2 domain in complex with the collagen-2 like domain of mbl
81c1cagA_
not modelled 5.8 83
PDB header:collagen
Chain: A: PDB Molecule:collagen-like peptide;
PDBTitle: crystal and molecular structure of a collagen-like peptide2 at 1.9 angstrom resolution
82c1cagC_
not modelled 5.8 83
PDB header:collagen
Chain: C: PDB Molecule:collagen-like peptide;
PDBTitle: crystal and molecular structure of a collagen-like peptide2 at 1.9 angstrom resolution
83c6a0cA_
not modelled 5.7 83
PDB header:structural protein
Chain: A: PDB Molecule:collagen type iii peptide;
PDBTitle: structure of a triple-helix region of human collagen type iii
84c6a0cC_
not modelled 5.7 83
PDB header:structural protein
Chain: C: PDB Molecule:collagen type iii peptide;
PDBTitle: structure of a triple-helix region of human collagen type iii
85c3zfsA_
not modelled 5.7 21
PDB header:oxidoreductase
Chain: A: PDB Molecule:f420-reducing hydrogenase, subunit alpha;
PDBTitle: cryo-em structure of the f420-reducing nife-hydrogenase from a2 methanogenic archaeon with bound substrate
86c1qsuB_
not modelled 5.6 83
PDB header:structural protein
Chain: B: PDB Molecule:protein ((pro-hyp-gly)4- glu-lys-gly(pro-hyp-gly)5);
PDBTitle: crystal structure of the triple-helical collagen-like peptide, (pro-2 hyp-gly)4-glu-lys-gly(pro-hyp-gly)5
87c1qsuA_
not modelled 5.6 83
PDB header:structural protein
Chain: A: PDB Molecule:protein ((pro-hyp-gly)4- glu-lys-gly(pro-hyp-gly)5);
PDBTitle: crystal structure of the triple-helical collagen-like peptide, (pro-2 hyp-gly)4-glu-lys-gly(pro-hyp-gly)5
88c4f3fC_
not modelled 5.5 47
PDB header:immune system
Chain: C: PDB Molecule:mesothelin;
PDBTitle: crystal structure of msln7-64 morab-009 fab complex
89c1cagB_
not modelled 5.5 83
PDB header:collagen
Chain: B: PDB Molecule:collagen-like peptide;
PDBTitle: crystal and molecular structure of a collagen-like peptide2 at 1.9 angstrom resolution
90c1cgdC_
not modelled 5.5 83
PDB header:collagen
Chain: C: PDB Molecule:collagen-like peptide;
PDBTitle: hydration structure of a collagen peptide
91c1cgdB_
not modelled 5.5 83
PDB header:collagen
Chain: B: PDB Molecule:collagen-like peptide;
PDBTitle: hydration structure of a collagen peptide
92c1cgdA_
not modelled 5.5 83
PDB header:collagen
Chain: A: PDB Molecule:collagen-like peptide;
PDBTitle: hydration structure of a collagen peptide
93c6hg7B_
not modelled 5.5 83
PDB header:structural protein
Chain: B: PDB Molecule:collagen alpha-1(ii) chain;
PDBTitle: crystal structure of a collagen ii fragment containing the binding2 site of pedf and comp, (pog)4-lkg hrg ftg lqg-pog(4)
94c6hg7A_
not modelled 5.5 83
PDB header:structural protein
Chain: A: PDB Molecule:collagen alpha-1(ii) chain;
PDBTitle: crystal structure of a collagen ii fragment containing the binding2 site of pedf and comp, (pog)4-lkg hrg ftg lqg-pog(4)
95c6hg7C_
not modelled 5.5 83
PDB header:structural protein
Chain: C: PDB Molecule:collagen alpha-1(ii) chain;
PDBTitle: crystal structure of a collagen ii fragment containing the binding2 site of pedf and comp, (pog)4-lkg hrg ftg lqg-pog(4)
96c2zycA_
not modelled 5.4 60
PDB header:hydrolase
Chain: A: PDB Molecule:peptidoglycan hydrolase flgj;
PDBTitle: crystal structure of peptidoglycan hydrolase from2 sphingomonas sp. a1
97c2qnuB_
not modelled 5.4 29
PDB header:structural genomics, unknown function
Chain: B: PDB Molecule:uncharacterized protein pa0076;
PDBTitle: crystal structure of pa0076 from pseudomonas aeruginosa pao12 at 2.05 a resolution
98c2jtwA_
not modelled 5.3 50
PDB header:membrane protein
Chain: A: PDB Molecule:transmembrane helix 7 of yeast vatpase;
PDBTitle: solution structure of tm7 bound to dpc micelles
99c2wseE_
not modelled 5.3 43
PDB header:photosynthesis
Chain: E: PDB Molecule:photosystem i reaction center subunit iv a, chloroplastic;
PDBTitle: improved model of plant photosystem i

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Transmembrane helix prediction 

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