Phyre Home Retrieve Phyre Job Id
Emailmdejesus@rockefeller.edu
DescriptionRVBD3031_(-)_3389933_3391513
DateThu Aug 8 16:20:20 BST 2019
Unique Job IDaf6db7c5af38b62c
SequenceLNTSASPVPG ... Download FASTA
Job Typenormal
Job Expiry

Summary 

Top model
Image coloured by rainbow N → C terminus
Model dimensions (Å):X:59.544 Y:72.815 Z:64.079
Model (left) based on template c3n92A_
Top template information
PDB header:transferase
Chain: A: PDB Molecule:alpha-amylase, gh57 family;
PDBTitle: crystal structure of tk1436, a gh57 branching enzyme from2 hyperthermophilic archaeon thermococcus kodakaraensis, in complex3 with glucose
Confidence and coverage
Confidence:100.0% Coverage: 94%
495 residues ( 94% of your sequence) have been modelled with 100.0% confidence by the single highest scoring template.
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Sequence analysis 

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#
Template Alignment Coverage3D Model Confidence
% i.d. Template Information
1c3n92A_



100.0 31
PDB header:transferase
Chain: A: PDB Molecule:alpha-amylase, gh57 family;
PDBTitle: crystal structure of tk1436, a gh57 branching enzyme from2 hyperthermophilic archaeon thermococcus kodakaraensis, in complex3 with glucose
2c5wu7A_



100.0 31
PDB header:hydrolase
Chain: A: PDB Molecule:uncharacterized protein;
PDBTitle: crystal structure of gh57-type branching enzyme from hyperthermophilic2 archaeon pyrococcus horikoshii
3c2b5dX_



100.0 26
PDB header:hydrolase
Chain: X: PDB Molecule:alpha-amylase;
PDBTitle: crystal structure of the novel alpha-amylase amyc from thermotoga2 maritima
4c1ufaA_



100.0 33
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:tt1467 protein;
PDBTitle: crystal structure of tt1467 from thermus thermophilus hb8
5d2b5dx2



100.0 26
Fold:7-stranded beta/alpha barrel
Superfamily:Glycoside hydrolase/deacetylase
Family:AmyC N-terminal domain-like
6d1ufaa2



100.0 34
Fold:7-stranded beta/alpha barrel
Superfamily:Glycoside hydrolase/deacetylase
Family:AmyC N-terminal domain-like
7c1k1yA_



100.0 22
PDB header:transferase
Chain: A: PDB Molecule:4-alpha-glucanotransferase;
PDBTitle: crystal structure of thermococcus litoralis 4-alpha-glucanotransferase2 complexed with acarbose
8d1k1xa3



100.0 22
Fold:7-stranded beta/alpha barrel
Superfamily:Glycoside hydrolase/deacetylase
Family:4-alpha-glucanotransferase, N-terminal domain
9d2b5dx1



100.0 23
Fold:immunoglobulin/albumin-binding domain-like
Superfamily:Families 57/38 glycoside transferase middle domain
Family:AmyC C-terminal domain-like
10d1ufaa1



100.0 28
Fold:immunoglobulin/albumin-binding domain-like
Superfamily:Families 57/38 glycoside transferase middle domain
Family:AmyC C-terminal domain-like
11c1htyA_



99.9 16
PDB header:hydrolase
Chain: A: PDB Molecule:alpha-mannosidase ii;
PDBTitle: golgi alpha-mannosidase ii
12c2ow7A_



99.9 15
PDB header:hydrolase
Chain: A: PDB Molecule:alpha-mannosidase 2;
PDBTitle: golgi alpha-mannosidase ii complex with (1r,6s,7r,8s)-1-2 thioniabicyclo[4.3.0]nonan-7,8-diol chloride
13c2wyhA_



99.9 13
PDB header:hydrolase
Chain: A: PDB Molecule:alpha-mannosidase;
PDBTitle: structure of the streptococcus pyogenes family gh38 alpha-2 mannosidase
14c6b9pA_



99.9 14
PDB header:hydrolase
Chain: A: PDB Molecule:alpha-mannosidase from canavalia ensiformis (jack bean);
PDBTitle: structure of gh 38 jack bean alpha-mannosidase in complex with a 36-2 valent iminosugar cluster inhibitor
15c5jm0A_



99.9 15
PDB header:hydrolase
Chain: A: PDB Molecule:alpha-mannosidase,alpha-mannosidase,alpha-mannosidase;
PDBTitle: structure of the s. cerevisiae alpha-mannosidase 1
16c3lvtA_



99.8 15
PDB header:hydrolase
Chain: A: PDB Molecule:glycosyl hydrolase, family 38;
PDBTitle: the crystal structure of a protein in the glycosyl hydrolase family 382 from enterococcus faecalis to 2.55a
17d3bvua3



99.7 15
Fold:7-stranded beta/alpha barrel
Superfamily:Glycoside hydrolase/deacetylase
Family:alpha-mannosidase
18c1o7dA_



99.4 20
PDB header:hydrolase
Chain: A: PDB Molecule:lysosomal alpha-mannosidase;
PDBTitle: the structure of the bovine lysosomal a-mannosidase suggests a novel2 mechanism for low ph activation
19c4cmrB_



99.2 22
PDB header:hydrolase
Chain: B: PDB Molecule:glycosyl hydrolase/deacetylase family protein;
PDBTitle: the crystal structure of novel exo-type maltose-forming2 amylase(py04_0872) from pyrococcus sp. st04
20c3qbuD_



99.0 13
PDB header:hydrolase
Chain: D: PDB Molecule:putative uncharacterized protein;
PDBTitle: crystal structure of putative peptidoglycan deactelyase (hp0310) from2 helicobacter pylori
21c3rxzA_



not modelled 98.9 18
PDB header:hydrolase
Chain: A: PDB Molecule:polysaccharide deacetylase;
PDBTitle: crystal structure of putative polysaccharide deacetylase from2 mycobacterium smegmatis
22c3s6oD_



not modelled 98.6 16
PDB header:hydrolase
Chain: D: PDB Molecule:polysaccharide deacetylase family protein;
PDBTitle: crystal structure of a polysaccharide deacetylase family protein from2 burkholderia pseudomallei
23d1z7aa1



not modelled 98.5 12
Fold:7-stranded beta/alpha barrel
Superfamily:Glycoside hydrolase/deacetylase
Family:PA1517-like
24c1w17A_



not modelled 98.4 12
PDB header:hydrolase
Chain: A: PDB Molecule:probable polysaccharide deacetylase pdaa;
PDBTitle: structure of bacillus subtilis pdaa, a family 4 carbohydrate esterase.
25c2y8uA_



not modelled 98.4 20
PDB header:hydrolase
Chain: A: PDB Molecule:chitin deacetylase;
PDBTitle: a. nidulans chitin deacetylase
26c4m1bA_



not modelled 98.3 20
PDB header:hydrolase
Chain: A: PDB Molecule:polysaccharide deacetylase;
PDBTitle: structural determination of ba0150, a polysaccharide deacetylase from2 bacillus anthracis
27d2j13a1



not modelled 98.3 16
Fold:7-stranded beta/alpha barrel
Superfamily:Glycoside hydrolase/deacetylase
Family:NodB-like polysaccharide deacetylase
28c2vyoA_



not modelled 98.2 14
PDB header:hydrolase
Chain: A: PDB Molecule:polysaccharide deacetylase domain-containing protein
PDBTitle: chitin deacetylase family member from encephalitozoon cuniculi
29d2c1ia1



not modelled 98.2 14
Fold:7-stranded beta/alpha barrel
Superfamily:Glycoside hydrolase/deacetylase
Family:NodB-like polysaccharide deacetylase
30d2iw0a1



not modelled 98.2 17
Fold:7-stranded beta/alpha barrel
Superfamily:Glycoside hydrolase/deacetylase
Family:NodB-like polysaccharide deacetylase
31d1ny1a_



not modelled 98.2 12
Fold:7-stranded beta/alpha barrel
Superfamily:Glycoside hydrolase/deacetylase
Family:NodB-like polysaccharide deacetylase
32c4l1gB_



not modelled 98.2 14
PDB header:hydrolase
Chain: B: PDB Molecule:peptidoglycan n-acetylglucosamine deacetylase;
PDBTitle: crystal structure of the bc1960 peptidoglycan n-acetylglucosamine2 deacetylase from bacillus cereus
33c2iw0A_



not modelled 98.1 18
PDB header:hydrolase
Chain: A: PDB Molecule:chitin deacetylase;
PDBTitle: structure of the chitin deacetylase from the fungal2 pathogen colletotrichum lindemuthianum
34c2c1iA_



not modelled 98.0 17
PDB header:hydrolase
Chain: A: PDB Molecule:peptidoglycan glcnac deacetylase;
PDBTitle: structure of streptococcus pneumoniae peptidoglycan deacetylase2 (sppgda) d 275 n mutant.
35c4wcjA_



not modelled 97.9 14
PDB header:hydrolase
Chain: A: PDB Molecule:polysaccharide deacetylase;
PDBTitle: structure of icab from ammonifex degensii
36c5lgcA_



not modelled 97.9 18
PDB header:hydrolase
Chain: A: PDB Molecule:arce4a;
PDBTitle: t48 deacetylase with substrate
37c6dq3B_



not modelled 97.9 12
PDB header:hydrolase
Chain: B: PDB Molecule:polysaccharide deacetylase;
PDBTitle: streptococcus pyogenes deacetylase pdi in complex with acetate
38d2cc0a1



not modelled 97.8 16
Fold:7-stranded beta/alpha barrel
Superfamily:Glycoside hydrolase/deacetylase
Family:NodB-like polysaccharide deacetylase
39c4f9dA_



not modelled 97.8 16
PDB header:hydrolase
Chain: A: PDB Molecule:poly-beta-1,6-n-acetyl-d-glucosamine n-deacetylase;
PDBTitle: structure of escherichia coli pgab 42-655 in complex with nickel
40d3bvua1



not modelled 97.7 13
Fold:immunoglobulin/albumin-binding domain-like
Superfamily:Families 57/38 glycoside transferase middle domain
Family:alpha-mannosidase, domain 2
41d2c71a1



not modelled 97.7 18
Fold:7-stranded beta/alpha barrel
Superfamily:Glycoside hydrolase/deacetylase
Family:NodB-like polysaccharide deacetylase
42c5bu6B_



not modelled 97.6 20
PDB header:hydrolase
Chain: B: PDB Molecule:bpsb (pgab), poly-beta-1,6-n-acetyl-d-glucosamine n-
PDBTitle: structure of bpsb deaceylase domain from bordetella bronchiseptica
43c6go1A_



not modelled 97.6 9
PDB header:hydrolase
Chain: A: PDB Molecule:polysaccharide deacetylase-like protein;
PDBTitle: crystal structure of a bacillus anthracis peptidoglycan deacetylase
44c4u10B_



not modelled 97.5 15
PDB header:hydrolase
Chain: B: PDB Molecule:poly-beta-1,6-n-acetyl-d-glucosamine n-deacetylase;
PDBTitle: probing the structure and mechanism of de-n-acetylase from2 aggregatibacter actinomycetemcomitans
45c5ncdA_



not modelled 97.3 13
PDB header:hydrolase
Chain: A: PDB Molecule:peptidoglycan n-acetylglucosamine deacetylase;
PDBTitle: crystal structure of the polysaccharide deacetylase bc1974 from2 bacillus cereus in complex with (2s)-2-amino-5-3 (diaminomethylideneamino)-n-hydroxypentanamide
46c4hd5A_



not modelled 97.2 10
PDB header:hydrolase
Chain: A: PDB Molecule:polysaccharide deacetylase;
PDBTitle: crystal structure of bc0361, a polysaccharide deacetylase from2 bacillus cereus
47c5znsA_



not modelled 96.6 14
PDB header:hydrolase
Chain: A: PDB Molecule:chitin deacetylase;
PDBTitle: insect chitin deacetylase
48c5z34A_



not modelled 96.6 13
PDB header:hydrolase
Chain: A: PDB Molecule:chitin deacetylase;
PDBTitle: the structure of a chitin deacetylase from bombyx mori provide the2 first insight into insect chitin deacetylation mechanism
49c5jp6A_



not modelled 95.0 12
PDB header:hydrolase
Chain: A: PDB Molecule:putative polysaccharide deacetylase;
PDBTitle: bdellovibrio bacteriovorus peptidoglycan deacetylase bd3279
50d1k1xa1



not modelled 94.6 15
Fold:immunoglobulin/albumin-binding domain-like
Superfamily:Families 57/38 glycoside transferase middle domain
Family:4-alpha-glucanotransferase, domain 2
51c2w3zA_



not modelled 94.6 14
PDB header:hydrolase
Chain: A: PDB Molecule:putative deacetylase;
PDBTitle: structure of a streptococcus mutans ce4 esterase
52c4nz3A_



not modelled 92.3 13
PDB header:hydrolase
Chain: A: PDB Molecule:deacetylase da1;
PDBTitle: structure of vibrio cholerae chitin de-n-acetylase in complex with2 di(n-acetyl-d-glucosamine) (cbs) in p 21 21 21
53d2nlya1



not modelled 91.3 13
Fold:7-stranded beta/alpha barrel
Superfamily:Glycoside hydrolase/deacetylase
Family:Divergent polysaccharide deacetylase
54c2vldA_



not modelled 81.7 10
PDB header:hydrolase
Chain: A: PDB Molecule:endonuclease nucs;
PDBTitle: crystal structure of a repair endonuclease from pyrococcus abyssi
55c5gkeB_



not modelled 70.7 10
PDB header:hydrolase/dna
Chain: B: PDB Molecule:endonuclease endoms;
PDBTitle: structure of endoms-dsdna1 complex
56c1o7dB_



not modelled 69.7 10
PDB header:hydrolase
Chain: B: PDB Molecule:lysosomal alpha-mannosidase;
PDBTitle: the structure of the bovine lysosomal a-mannosidase suggests a novel2 mechanism for low ph activation
57c2vwtA_



not modelled 69.4 24
PDB header:lyase
Chain: A: PDB Molecule:yfau, 2-keto-3-deoxy sugar aldolase;
PDBTitle: crystal structure of yfau, a metal ion dependent class ii2 aldolase from escherichia coli k12 - mg-pyruvate product3 complex
58c2v5jB_



not modelled 62.2 21
PDB header:lyase
Chain: B: PDB Molecule:2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase;
PDBTitle: apo class ii aldolase hpch
59d1dxea_



not modelled 61.1 21
Fold:TIM beta/alpha-barrel
Superfamily:Phosphoenolpyruvate/pyruvate domain
Family:HpcH/HpaI aldolase
60d1wuua1



not modelled 60.4 14
Fold:Ribosomal protein S5 domain 2-like
Superfamily:Ribosomal protein S5 domain 2-like
Family:GHMP Kinase, N-terminal domain
61c6r62A_



not modelled 57.7 9
PDB header:lyase
Chain: A: PDB Molecule:hpch/hpai aldolase;
PDBTitle: crystal structure of a class ii pyruvate aldolase from sphingomonas2 wittichii rw1 in complex with hydroxypyruvate
62c4zrxA_



not modelled 54.1 11
PDB header:hydrolase
Chain: A: PDB Molecule:f5/8 type c domain protein;
PDBTitle: crystal structure of a putative alpha-l-fucosidase (bacova_04357) from2 bacteroides ovatus atcc 8483 at 1.59 a resolution
63c5gtxA_



not modelled 47.3 17
PDB header:oxidoreductase
Chain: A: PDB Molecule:buckwheat glutaredoxin;
PDBTitle: crystal structure of mutated buckwheat glutaredoxin
64c4tv6A_



not modelled 45.7 23
PDB header:lyase
Chain: A: PDB Molecule:2-dehydro-3-deoxyglucarate aldolase;
PDBTitle: crystal structure of citrate synthase variant sbng e151q
65c4f5yA_



not modelled 44.4 12
PDB header:immune system
Chain: A: PDB Molecule:transmembrane protein 173;
PDBTitle: crystal structure of human sting ctd complex with c-di-gmp
66c3ff4A_



not modelled 44.3 15
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:uncharacterized protein;
PDBTitle: crystal structure of uncharacterized protein chu_1412
67d1izca_



not modelled 43.4 16
Fold:TIM beta/alpha-barrel
Superfamily:Phosphoenolpyruvate/pyruvate domain
Family:HpcH/HpaI aldolase
68c1izcA_



not modelled 43.4 16
PDB header:lyase
Chain: A: PDB Molecule:macrophomate synthase intermolecular diels-alderase;
PDBTitle: crystal structure analysis of macrophomate synthase
69c4b5sB_



not modelled 41.3 19
PDB header:lyase
Chain: B: PDB Molecule:4-hydroxy-2-oxo-heptane-1,7-dioate aldolase;
PDBTitle: crystal structures of divalent metal dependent pyruvate aldolase,2 hpai, in complex with pyruvate
70c2ztbB_



not modelled 37.2 18
PDB header:toxin
Chain: B: PDB Molecule:crystal protein;
PDBTitle: crystal structure of the parasporin-2 bacillus thuringiensis toxin2 that recognizes cancer cells
71c4mf4F_



not modelled 36.8 21
PDB header:lyase
Chain: F: PDB Molecule:hpch/hpai aldolase/citrate lyase family protein;
PDBTitle: crystal structure of a hpch/hpal aldolase/citrate lyase family protein2 from burkholderia cenocepacia j2315
72d1r7ha_



not modelled 35.3 22
Fold:Thioredoxin fold
Superfamily:Thioredoxin-like
Family:Thioltransferase
73c4rl6A_



not modelled 35.2 14
PDB header:oxidoreductase
Chain: A: PDB Molecule:saccharopine dehydrogenase;
PDBTitle: crystal structure of the q04l03_strp2 protein from streptococcus2 pneumoniae. northeast structural genomics consortium target spr105
74c1uasA_



not modelled 34.2 26
PDB header:hydrolase
Chain: A: PDB Molecule:alpha-galactosidase;
PDBTitle: crystal structure of rice alpha-galactosidase
75c2mxnA_



not modelled 31.6 29
PDB header:protein binding
Chain: A: PDB Molecule:mono-cysteine glutaredoxin;
PDBTitle: nmr structure of the mature form of trypanosoma brucei 1cgrx1
76c3zywB_



not modelled 29.9 12
PDB header:metal binding protein
Chain: B: PDB Molecule:glutaredoxin-3;
PDBTitle: crystal structure of the first glutaredoxin domain of human2 glutaredoxin 3 (glrx3)
77d1r46a2



not modelled 29.4 29
Fold:TIM beta/alpha-barrel
Superfamily:(Trans)glycosidases
Family:Amylase, catalytic domain
78c4mfkA_



not modelled 28.8 13
PDB header:transferase
Chain: A: PDB Molecule:putative uncharacterized protein tcp24;
PDBTitle: the crystal structure of acyltransferase in complex with decanoyl-coa
79c4inaA_



not modelled 28.6 12
PDB header:oxidoreductase
Chain: A: PDB Molecule:saccharopine dehydrogenase;
PDBTitle: crystal structure of the q7mss8_wolsu protein from wolinella2 succinogenes. northeast structural genomics consortium target wsr35
80c3qz6A_



not modelled 26.6 29
PDB header:lyase
Chain: A: PDB Molecule:hpch/hpai aldolase;
PDBTitle: the crystal structure of hpch/hpai aldolase from desulfitobacterium2 hafniense dcb-2
81c1ykaA_



not modelled 25.9 21
PDB header:electron transport
Chain: A: PDB Molecule:monothiol glutaredoxin ydhd;
PDBTitle: solution structure of grx4, a monothiol glutaredoxin from2 e. coli.
82c5zvlB_



not modelled 25.9 19
PDB header:oxidoreductase
Chain: B: PDB Molecule:glutaredoxin;
PDBTitle: crystal structure of wheat glutarredoxin
83c2e7pC_



not modelled 25.2 19
PDB header:electron transport
Chain: C: PDB Molecule:glutaredoxin;
PDBTitle: crystal structure of the holo form of glutaredoxin c1 from populus2 tremula x tremuloides
84c4tr1A_



not modelled 23.4 22
PDB header:oxidoreductase
Chain: A: PDB Molecule:glutaredoxin 3;
PDBTitle: crystal structure of gsh-bound cgrx2/c15s
85c3mo4B_



not modelled 23.3 12
PDB header:hydrolase
Chain: B: PDB Molecule:alpha-1,3/4-fucosidase;
PDBTitle: the crystal structure of an alpha-(1-3,4)-fucosidase from2 bifidobacterium longum subsp. infantis atcc 15697
86d2d59a1



not modelled 22.9 12
Fold:NAD(P)-binding Rossmann-fold domains
Superfamily:NAD(P)-binding Rossmann-fold domains
Family:CoA-binding domain
87c3qmxA_



not modelled 22.3 11
PDB header:electron transport
Chain: A: PDB Molecule:glutaredoxin a;
PDBTitle: x-ray crystal structure of synechocystis sp. pcc 6803 glutaredoxin a
88c5lnfA_



not modelled 21.2 15
PDB header:chaperone
Chain: A: PDB Molecule:peroxisomal biogenesis factor 19;
PDBTitle: solution nmr structure of farnesylated pex19, c-terminal domain
89c2lqoA_



not modelled 21.2 15
PDB header:oxidoreductase
Chain: A: PDB Molecule:putative glutaredoxin rv3198.1/mt3292;
PDBTitle: mrx1 reduced
90d1iuka_



not modelled 20.3 22
Fold:NAD(P)-binding Rossmann-fold domains
Superfamily:NAD(P)-binding Rossmann-fold domains
Family:CoA-binding domain
91c5y4uA_



not modelled 19.4 13
PDB header:oxidoreductase
Chain: A: PDB Molecule:monothiol glutaredoxin-3;
PDBTitle: crystal structure of grx domain of grx3 from saccharomyces cerevisiae
92c1o7dC_



not modelled 19.3 5
PDB header:hydrolase
Chain: C: PDB Molecule:lysosomal alpha-mannosidase;
PDBTitle: the structure of the bovine lysosomal a-mannosidase suggests a novel2 mechanism for low ph activation
93d1rbli_



not modelled 19.2 13
Fold:RuBisCO, small subunit
Superfamily:RuBisCO, small subunit
Family:RuBisCO, small subunit
94c3zijA_



not modelled 18.9 15
PDB header:oxidoreductase
Chain: A: PDB Molecule:thioredoxin;
PDBTitle: crystal structure of the thioredoxin-like protein bc3987
95c2ybvN_



not modelled 18.0 9
PDB header:lyase
Chain: N: PDB Molecule:ribulose bisphosphate carboxylase small subunit;
PDBTitle: structure of rubisco from thermosynechococcus elongatus
96d1wdds_



not modelled 17.6 14
Fold:RuBisCO, small subunit
Superfamily:RuBisCO, small subunit
Family:RuBisCO, small subunit
97c5bq9B_



not modelled 17.5 36
PDB header:unknown function, structural genomics
Chain: B: PDB Molecule:uncharacterized protein;
PDBTitle: crystal structure of uncharacterized protein lpg1496 legionella2 pneumophila subsp. pneumophila
98c2duwA_



not modelled 17.3 23
PDB header:ligand binding protein
Chain: A: PDB Molecule:putative coa-binding protein;
PDBTitle: solution structure of putative coa-binding protein of2 klebsiella pneumoniae
99c2y48B_



not modelled 17.3 30
PDB header:oxidoreductase
Chain: B: PDB Molecule:rest corepressor 1;
PDBTitle: crystal structure of lsd1-corest in complex with a n-2 terminal snail peptide

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