Phyre Home Retrieve Phyre Job Id
Emailmdejesus@rockefeller.edu
DescriptionRVBD3032A_(RVBD3032A)_3392823_3393212
DateThu Aug 8 16:20:20 BST 2019
Unique Job IDf7ff7d68c0c697b7
SequenceVKPQDQGLHF ... Download FASTA
Job Typenormal
Job Expiry

Summary 

Top model
Image coloured by rainbow N → C terminus
Model dimensions (Å):X:18.918 Y:15.449 Z:20.244
Model (left) based on template d1wj9a2
Top template information
Fold:Ferredoxin-like
Superfamily:CRISPR-associated protein
Family:CRISPR-associated protein
Confidence and coverage
Confidence: 24.1% Coverage: 12%
16 residues ( 12% of your sequence) have been modelled with 24.1% confidence by the single highest scoring template.
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3D viewing
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Sequence analysis 

Download FASTA version

Secondary structure and disorder prediction [Show] 

Domain analysis [Show] 

Detailed template information [Hide] 

 

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Template Alignment Coverage3D Model Confidence
% i.d. Template Information
1d1wj9a2



24.1 38
Fold:Ferredoxin-like
Superfamily:CRISPR-associated protein
Family:CRISPR-associated protein
2c4dzdA_



15.3 20
PDB header:hydrolase
Chain: A: PDB Molecule:uncharacterized protein ygch;
PDBTitle: crystal structure of the crispr-associated protein cas6e from2 escherichia coli str. k-12
3c4ld7N_



13.3 22
PDB header:transferase
Chain: N: PDB Molecule:dimethylallyl tryptophan synthase;
PDBTitle: crystal structure of anapt from neosartorya fischeri
4c4whiA_



12.5 20
PDB header:hydrolase
Chain: A: PDB Molecule:beta-lactamase;
PDBTitle: crystal structure of c-terminal domain of penicillin binding protein2 rv0907
5c3qrqA_



12.4 43
PDB header:rna binding protein/rna
Chain: A: PDB Molecule:putative uncharacterized protein tthb192;
PDBTitle: structure of thermus thermophilus cse3 bound to an rna representing a2 pre-cleavage complex
6c1dl5A_



10.7 36
PDB header:transferase
Chain: A: PDB Molecule:protein-l-isoaspartate o-methyltransferase;
PDBTitle: protein-l-isoaspartate o-methyltransferase
7d1bhua_



8.6 42
Fold:gamma-Crystallin-like
Superfamily:gamma-Crystallin-like
Family:Streptomyces metalloproteinase inhibitor, SMPI
8c1wj9A_



8.4 43
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:crispr-associated protein;
PDBTitle: crystal structure of a crispr-associated protein from2 thermus thermophilus
9c4y7lB_



8.3 21
PDB header:membrane protein
Chain: B: PDB Molecule:type vi secretion protein icmf;
PDBTitle: t6ss protein tssm c-terminal domain (869-1107) from eaec
10c3oe3B_



8.2 23
PDB header:hydrolase inhibitor
Chain: B: PDB Molecule:putative periplasmic protein;
PDBTitle: crystal structure of plic-st, periplasmic lysozyme inhibitor of c-type2 lysozyme from salmonella typhimurium
11c3tbdA_



7.7 24
PDB header:cell adhesion
Chain: A: PDB Molecule:netrin-g2;
PDBTitle: crystal structure of domain vi and le1 of human netrin-g2
12d1hlca_



7.6 9
Fold:Concanavalin A-like lectins/glucanases
Superfamily:Concanavalin A-like lectins/glucanases
Family:Galectin (animal S-lectin)
13c2bkdN_



7.3 34
PDB header:nuclear protein
Chain: N: PDB Molecule:fragile x mental retardation 1 protein;
PDBTitle: structure of the n-terminal domain of fragile x mental retardation2 protein
14c5u0aA_



7.3 13
PDB header:immune system
Chain: A: PDB Molecule:crispr-associated protein, cse3 family;
PDBTitle: crispr rna-guided surveillance complex
15d2csba2



6.7 44
Fold:SAM domain-like
Superfamily:RuvA domain 2-like
Family:Topoisomerase V repeat domain
16c4aqtA_



6.7 18
PDB header:cell adhesion
Chain: A: PDB Molecule:laminin subunit gamma-1;
PDBTitle: laminin gamma1 ln-le1-2 structure
17c6ixhQ_



6.7 14
PDB header:membrane protein
Chain: Q: PDB Molecule:type vi secretion system tssm;
PDBTitle: type vi secretion system membrane core complex
18c3zyiB_



6.7 24
PDB header:cell adhesion
Chain: B: PDB Molecule:netrin-g2;
PDBTitle: netring2 in complex with ngl2
19d1w6na_



6.5 11
Fold:Concanavalin A-like lectins/glucanases
Superfamily:Concanavalin A-like lectins/glucanases
Family:Galectin (animal S-lectin)
20c4wnxA_



6.4 35
PDB header:laminin binding protein
Chain: A: PDB Molecule:netrin-4;
PDBTitle: netrin 4 lacking the c-terminal domain
21d1qmja_



not modelled 6.4 13
Fold:Concanavalin A-like lectins/glucanases
Superfamily:Concanavalin A-like lectins/glucanases
Family:Galectin (animal S-lectin)
22c3duiB_



not modelled 6.1 21
PDB header:sugar binding protein
Chain: B: PDB Molecule:beta-galactoside-binding lectin;
PDBTitle: crystal structure of the oxidized cg-1b: an adhesion/growth-2 regulatory lectin from chicken
23d1a78a_



not modelled 5.8 16
Fold:Concanavalin A-like lectins/glucanases
Superfamily:Concanavalin A-like lectins/glucanases
Family:Galectin (animal S-lectin)
24c2o61A_



not modelled 5.4 10
PDB header:transcription/dna
Chain: A: PDB Molecule:transcription factor p65/interferon regulatory factor
PDBTitle: crystal structure of nfkb, irf7, irf3 bound to the interferon-b2 enhancer
25c4brwB_



not modelled 5.4 56
PDB header:hydrolase
Chain: B: PDB Molecule:dna topoisomerase 2-associated protein pat1;
PDBTitle: crystal structure of the yeast dhh1-pat1 complex
26c4e0uB_



not modelled 5.4 40
PDB header:transferase
Chain: B: PDB Molecule:cyclic dipeptide n-prenyltransferase;
PDBTitle: crystal structure of cdpnpt in complex with thiolodiphosphate and (s)-2 benzodiazependione
27c3i31A_



not modelled 5.1 50
PDB header:rna binding protein,hydrolase
Chain: A: PDB Molecule:heat resistant rna dependent atpase;
PDBTitle: hera helicase rna binding domain is an rrm fold
28c2yxsA_



not modelled 5.0 13
PDB header:sugar binding protein
Chain: A: PDB Molecule:galectin-8 variant;
PDBTitle: crystal sturcture of n-terminal domain of human galectin-8 with d-2 lactose

Binding site prediction 

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