Phyre Home Retrieve Phyre Job Id
Emailmdejesus@rockefeller.edu
DescriptionRVBD3044_(fecB)_3405147_3406226
DateThu Aug 8 16:20:21 BST 2019
Unique Job IDe552df54ab345190
SequenceMRSTVAVAVA ... Download FASTA
Job Typenormal
Job Expiry

Summary 

Top model
Image coloured by rainbow N → C terminus
Model dimensions (Å):X:58.309 Y:52.285 Z:52.141
Model (left) based on template c3eiwA_
Top template information
PDB header:transport protein
Chain: A: PDB Molecule:htsa protein;
PDBTitle: crystal structure of staphylococcus aureus lipoprotein, htsa
Confidence and coverage
Confidence:100.0% Coverage: 79%
283 residues ( 79% of your sequence) have been modelled with 100.0% confidence by the single highest scoring template.
Additional confident templates have been detected (see Domain analysis) which cover other regions of your sequence.
336 residues ( 94%) could be modelled at >90% confidence using multiple-templates.
You may wish to try resubmitting your sequence in "intensive" mode to model more of your sequence.
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Sequence analysis 

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Secondary structure and disorder prediction [Show] 

Domain analysis [Show] 

Detailed template information [Hide] 

 

#
Template Alignment Coverage3D Model Confidence
% i.d. Template Information
1c3eiwA_
100.0 18
PDB header:transport protein
Chain: A: PDB Molecule:htsa protein;
PDBTitle: crystal structure of staphylococcus aureus lipoprotein, htsa
2c3tnyA_
100.0 24
PDB header:metal transport
Chain: A: PDB Molecule:yfiy (abc transport system substrate-binding protein);
PDBTitle: structure of yfiy from bacillus cereus bound to the siderophore iron2 (iii) schizokinen
3c4hn9B_
100.0 14
PDB header:transport protein
Chain: B: PDB Molecule:iron complex transport system substrate-binding protein;
PDBTitle: crystal structure of iron abc transporter solute-binding protein from2 eubacterium eligens
4c3gfvA_
100.0 14
PDB header:transport protein
Chain: A: PDB Molecule:uncharacterized abc transporter solute-binding protein
PDBTitle: crystal structure of petrobactin-binding protein yclq from bacillu2 subtilis
5c3pshA_
100.0 13
PDB header:metal transport
Chain: A: PDB Molecule:protein hi_1472;
PDBTitle: classification of a haemophilus influenzae abc transporter hi1470/712 through its cognate molybdate periplasmic binding protein mola (mola3 bound to molybdate)
6c5az3A_
100.0 13
PDB header:transport protein
Chain: A: PDB Molecule:abc-type transporter, periplasmic component;
PDBTitle: crystal structure of heme binding protein hmut
7c4ovkA_
100.0 16
PDB header:solute-binding protein
Chain: A: PDB Molecule:periplasmic binding protein;
PDBTitle: crystal structure of periplasmic solute binding protein from2 veillonella parvula dsm 2008
8c3tefA_
100.0 18
PDB header:transport protein
Chain: A: PDB Molecule:iron(iii) abc transporter, periplasmic iron-compound-
PDBTitle: crystal structure of the periplasmic catecholate-siderophore binding2 protein vctp from vibrio cholerae
9d2chua1
100.0 20
Fold:Chelatase-like
Superfamily:"Helical backbone" metal receptor
Family:TM0189-like
10c3r5tA_
100.0 19
PDB header:metal transport
Chain: A: PDB Molecule:ferric vibriobactin abc transporter, periplasmic ferric
PDBTitle: crystal structure of holo-viup
11c3tlkB_
100.0 17
PDB header:metal transport
Chain: B: PDB Molecule:ferrienterobactin-binding periplasmic protein;
PDBTitle: crystal structure of holo fepb
12c3be5D_
100.0 20
PDB header:metal transport
Chain: D: PDB Molecule:putative iron compound-binding protein of abc transporter
PDBTitle: crystal structure of fite (crystal form 1), a group iii periplasmic2 siderophore binding protein
13c4jccA_
100.0 20
PDB header:transport protein
Chain: A: PDB Molecule:iron-compound abc transporter, iron-compound-binding
PDBTitle: crystal structure of iron uptake abc transporter substrate-binding2 protein piua from streptococcus pneumoniae canada mdr_19a
14c5cr9A_
100.0 16
PDB header:transport protein
Chain: A: PDB Molecule:abc-type fe3+-hydroxamate transport system, periplasmic
PDBTitle: crystal structure of abc-type fe3+-hydroxamate transport system from2 saccharomonospora viridis dsm 43017
15c6mflA_
100.0 19
PDB header:metal transport
Chain: A: PDB Molecule:baub;
PDBTitle: structure of siderophore binding protein baub bound to a complex2 between two molecules of acinetobactin and ferric iron.
16c6allB_
100.0 18
PDB header:metal transport
Chain: B: PDB Molecule:fe(3+)-citrate-binding protein yfmc;
PDBTitle: crystal structure of a predicted ferric/iron (iii) hydroxymate2 siderophore substrate binding protein from bacillus anthracis
17c2phzA_
100.0 14
PDB header:transport protein
Chain: A: PDB Molecule:iron-uptake system-binding protein;
PDBTitle: crystal structure of iron-uptake system-binding protein feua from2 bacillus subtilis. northeast structural genomics target sr580.
18d2phza1
100.0 14
Fold:Chelatase-like
Superfamily:"Helical backbone" metal receptor
Family:TM0189-like
19c4n01B_
100.0 12
PDB header:transport protein
Chain: B: PDB Molecule:periplasmic binding protein;
PDBTitle: the crystal structure of a periplasmic binding protein from2 veillonella parvula dsm 2008
20c4pagA_
100.0 15
PDB header:transport protein
Chain: A: PDB Molecule:periplasmic binding protein;
PDBTitle: abc transporter solute binding protein from sulfurospirillum2 deleyianum dsm 6946
21c5gj3A_
not modelled 100.0 18
PDB header:transport protein
Chain: A: PDB Molecule:periplasmic binding protein;
PDBTitle: periplasmic heme-binding protein rhut from roseiflexus sp. rs-1 in2 two-heme bound form (holo-2)
22c6b2xB_
not modelled 100.0 15
PDB header:metal transport
Chain: B: PDB Molecule:solute-binding periplasmic protein of iron/siderophore abc
PDBTitle: apo yiua crystal form 1
23c4mx8C_
not modelled 100.0 23
PDB header:solute-binding protein
Chain: C: PDB Molecule:periplasmic binding protein;
PDBTitle: crystal structure of troa-like periplasmic binding protein2 peripla_bp_2 from xylanimonas cellulosilytica
24c4mlzB_
not modelled 100.0 18
PDB header:solute binding protein
Chain: B: PDB Molecule:periplasmic binding protein;
PDBTitle: crystal structure of periplasmic binding protein from jonesia2 denitrificans
25c4ljsA_
not modelled 100.0 17
PDB header:transport protein
Chain: A: PDB Molecule:periplasmic binding protein;
PDBTitle: the crystal structure of a periplasmic binding protein from2 veillonella parvula dsm 2008
26c5dh0B_
not modelled 100.0 20
PDB header:protein binding
Chain: B: PDB Molecule:siderophore periplasmic binding protein;
PDBTitle: structure of the siderophore periplasmic binding protein from the2 fuscachelin gene cluster of thermobifida fusca in p41
27c5flyB_
not modelled 100.0 19
PDB header:metal transport
Chain: B: PDB Molecule:ferrichrome-binding periplasmic protein;
PDBTitle: the fhud protein from s.pseudintermedius
28c4b8yA_
not modelled 100.0 18
PDB header:transport protein/siderophore
Chain: A: PDB Molecule:fhud2;
PDBTitle: ferrichrome-bound fhud2
29c4pm4B_
not modelled 100.0 16
PDB header:solute-binding protein
Chain: B: PDB Molecule:iron complex transporter substrate-binding protein;
PDBTitle: structure of a putative periplasmic iron siderophore binding protein2 (rv0265c) from mycobacterium tuberculosis h37rv
30c4h59A_
not modelled 100.0 17
PDB header:transport protein
Chain: A: PDB Molecule:iron-compound abc transporter, iron compound-binding
PDBTitle: crystal structure of iron uptake abc transporter substrate-binding2 protein piaa from streptococcus pneumoniae canada mdr_19a bound to3 bis-tris propane
31c4mo9A_
not modelled 100.0 15
PDB header:solute-binding protein
Chain: A: PDB Molecule:periplasmic binding protein;
PDBTitle: crystal structure of troa-like periplasmic binding protein fepb from2 veillonella parvula
32c5khlB_
not modelled 100.0 16
PDB header:transport protein
Chain: B: PDB Molecule:hemin abc transporter, periplasmic hemin-binding protein
PDBTitle: crystal structure of periplasmic heme binding protein hutb of vibrio2 cholerae
33c2r79A_
not modelled 100.0 22
PDB header:transport protein
Chain: A: PDB Molecule:periplasmic binding protein;
PDBTitle: crystal structure of a periplasmic heme binding protein from2 pseudomonas aeruginosa
34c5joqA_
not modelled 100.0 16
PDB header:hydrolase
Chain: A: PDB Molecule:lmo2184 protein;
PDBTitle: crystal structure of an abc transporter substrate-binding protein from2 listeria monocytogenes egd-e
35c4mdyA_
not modelled 100.0 18
PDB header:transport protein
Chain: A: PDB Molecule:periplasmic binding protein;
PDBTitle: crystal structure of periplasmic solute binding protein from2 mycobacterium smegmatis str. mc2 155
36c5yscA_
not modelled 100.0 17
PDB header:transport protein
Chain: A: PDB Molecule:vitamin b12-binding protein;
PDBTitle: crystal structure of periplasmic vitamin b12 binding protein btuf of2 vibrio cholerae
37c4inpA_
not modelled 100.0 10
PDB header:transport protein
Chain: A: PDB Molecule:iron (iii) abc transporter, periplasmic iron-binding
PDBTitle: the crystal structure of helicobacter pylori ceue (hp1561) with ni(ii)2 bound
38c4m7oA_
not modelled 100.0 14
PDB header:iron binding protein
Chain: A: PDB Molecule:iron-binding protein;
PDBTitle: the crystal structure of a possible an iron-binding (periplasmic2 solute-binding) protein from staphylococcus epidermidis atcc 12228.
39c3mwgA_
not modelled 100.0 22
PDB header:transport protein
Chain: A: PDB Molecule:iron-regulated abc transporter siderophore-binding protein
PDBTitle: crystal structure of staphylococcus aureus sira
40c3md9A_
not modelled 100.0 19
PDB header:transport protein
Chain: A: PDB Molecule:hemin-binding periplasmic protein hmut;
PDBTitle: structure of apo form of a periplasmic heme binding protein
41c2x4lA_
not modelled 100.0 13
PDB header:transport
Chain: A: PDB Molecule:ferric-siderophore receptor protein;
PDBTitle: crystal structure of dese, a ferric-siderophore receptor protein from2 streptomyces coelicolor
42c2r7aC_
not modelled 100.0 19
PDB header:transport protein
Chain: C: PDB Molecule:bacterial heme binding protein;
PDBTitle: crystal structure of a periplasmic heme binding protein from shigella2 dysenteriae
43c5b58T_
not modelled 100.0 22
PDB header:metal binding protein
Chain: T: PDB Molecule:putative hemin transport system, substrate-binding protein;
PDBTitle: inward-facing conformation of abc heme importer bhuuv in complex with2 periplasmic heme binding protein bhut from burkholderia cenocepacia
44c2q8pA_
not modelled 100.0 13
PDB header:metal transport
Chain: A: PDB Molecule:iron-regulated surface determinant e;
PDBTitle: crystal structure of selenomethionine labelled s. aureus isde2 complexed with heme
45d1esza_
not modelled 100.0 19
Fold:Chelatase-like
Superfamily:"Helical backbone" metal receptor
Family:Periplasmic ferric siderophore binding protein FhuD
46c5ggxD_
not modelled 100.0 21
PDB header:transport protein
Chain: D: PDB Molecule:iron(iii) abc transporter, periplasmic iron-compound-
PDBTitle: crystal structure of fe3+ - desferal bound siderophore binding protein2 fhud from vibrio cholerae
47c3g9qA_
not modelled 100.0 16
PDB header:transport protein
Chain: A: PDB Molecule:ferrichrome-binding protein;
PDBTitle: crystal structure of the fhud fold-family bsu3320, a periplasmic2 binding protein component of a fep/fec-like ferrichrome abc3 transporter from bacillus subtilis. northeast structural genomics4 consortium target sr577a
48d2etva1
not modelled 100.0 11
Fold:Chelatase-like
Superfamily:"Helical backbone" metal receptor
Family:TM0189-like
49d1n2za_
not modelled 100.0 15
Fold:Chelatase-like
Superfamily:"Helical backbone" metal receptor
Family:TroA-like
50c5n6yD_
not modelled 93.7 11
PDB header:oxidoreductase
Chain: D: PDB Molecule:nitrogenase vanadium-iron protein alpha chain;
PDBTitle: azotobacter vinelandii vanadium nitrogenase
51c3aerC_
not modelled 92.7 12
PDB header:oxidoreductase
Chain: C: PDB Molecule:light-independent protochlorophyllide reductase subunit n;
PDBTitle: structure of the light-independent protochlorophyllide reductase2 catalyzing a key reduction for greening in the dark
52c2ynmC_
not modelled 92.7 11
PDB header:oxidoreductase
Chain: C: PDB Molecule:light-independent protochlorophyllide reductase subunit n;
PDBTitle: structure of the adpxalf3-stabilized transition state of the2 nitrogenase-like dark-operative protochlorophyllide oxidoreductase3 complex from prochlorococcus marinus with its substrate4 protochlorophyllide a
53d1m1na_
not modelled 90.9 9
Fold:Chelatase-like
Superfamily:"Helical backbone" metal receptor
Family:Nitrogenase iron-molybdenum protein
54d1qh8a_
not modelled 89.4 14
Fold:Chelatase-like
Superfamily:"Helical backbone" metal receptor
Family:Nitrogenase iron-molybdenum protein
55c3pdiG_
not modelled 82.2 13
PDB header:protein binding
Chain: G: PDB Molecule:nitrogenase mofe cofactor biosynthesis protein nife;
PDBTitle: precursor bound nifen
56d1qh8b_
not modelled 77.9 16
Fold:Chelatase-like
Superfamily:"Helical backbone" metal receptor
Family:Nitrogenase iron-molybdenum protein
57c2ynmD_
not modelled 72.2 17
PDB header:oxidoreductase
Chain: D: PDB Molecule:light-independent protochlorophyllide reductase subunit b;
PDBTitle: structure of the adpxalf3-stabilized transition state of the2 nitrogenase-like dark-operative protochlorophyllide oxidoreductase3 complex from prochlorococcus marinus with its substrate4 protochlorophyllide a
58d1m1nb_
not modelled 66.6 15
Fold:Chelatase-like
Superfamily:"Helical backbone" metal receptor
Family:Nitrogenase iron-molybdenum protein
59c4rvgA_
not modelled 60.5 14
PDB header:transferase
Chain: A: PDB Molecule:d-mycarose 3-c-methyltransferase;
PDBTitle: crystal structure of mtmc in complex with sam and tdp
60c5kojD_
not modelled 58.4 18
PDB header:oxidoreductase
Chain: D: PDB Molecule:nitrogenase femo beta subunit protein nifk;
PDBTitle: nitrogenase mofep protein in the ids oxidized state
61d1miob_
not modelled 57.7 13
Fold:Chelatase-like
Superfamily:"Helical backbone" metal receptor
Family:Nitrogenase iron-molybdenum protein
62c3aerB_
not modelled 56.0 15
PDB header:oxidoreductase
Chain: B: PDB Molecule:light-independent protochlorophyllide reductase subunit b;
PDBTitle: structure of the light-independent protochlorophyllide reductase2 catalyzing a key reduction for greening in the dark
63d1mioa_
not modelled 53.1 6
Fold:Chelatase-like
Superfamily:"Helical backbone" metal receptor
Family:Nitrogenase iron-molybdenum protein
64c5jm0A_
not modelled 47.3 9
PDB header:hydrolase
Chain: A: PDB Molecule:alpha-mannosidase,alpha-mannosidase,alpha-mannosidase;
PDBTitle: structure of the s. cerevisiae alpha-mannosidase 1
65c5vytD_
not modelled 47.1 15
PDB header:transferase
Chain: D: PDB Molecule:gdp-mannose 4,6-dehydratase / gdp-4-amino-4,6-dideoxy-d-
PDBTitle: crystal structure of the wbkc n-formyltransferase (f142a variant) from2 brucella melitensis
66c3ndjA_
not modelled 45.4 15
PDB header:transferase
Chain: A: PDB Molecule:methyltransferase;
PDBTitle: x-ray structure of a c-3'-methyltransferase in complex with s-2 adenosyl-l-homocysteine and sugar product
67d1q3qa2
not modelled 43.3 16
Fold:The "swivelling" beta/beta/alpha domain
Superfamily:GroEL apical domain-like
Family:Group II chaperonin (CCT, TRIC), apical domain
68c3pdiB_
not modelled 36.4 10
PDB header:protein binding
Chain: B: PDB Molecule:nitrogenase mofe cofactor biosynthesis protein nifn;
PDBTitle: precursor bound nifen
69c2r8rB_
not modelled 35.9 28
PDB header:transferase
Chain: B: PDB Molecule:sensor protein;
PDBTitle: crystal structure of the n-terminal region (19..243) of sensor protein2 kdpd from pseudomonas syringae pv. tomato str. dc3000
70d1gmla_
not modelled 35.8 18
Fold:The "swivelling" beta/beta/alpha domain
Superfamily:GroEL apical domain-like
Family:Group II chaperonin (CCT, TRIC), apical domain
71c3woaA_
not modelled 35.4 13
PDB header:dna binding protein, sugar binding prote
Chain: A: PDB Molecule:repressor protein ci, maltose-binding periplasmic protein;
PDBTitle: crystal structure of lambda repressor (1-45) fused with maltose-2 binding protein
72d1assa_
not modelled 31.5 16
Fold:The "swivelling" beta/beta/alpha domain
Superfamily:GroEL apical domain-like
Family:Group II chaperonin (CCT, TRIC), apical domain
73d1a6db2
not modelled 30.1 10
Fold:The "swivelling" beta/beta/alpha domain
Superfamily:GroEL apical domain-like
Family:Group II chaperonin (CCT, TRIC), apical domain
74d7reqa2
not modelled 30.0 13
Fold:Flavodoxin-like
Superfamily:Cobalamin (vitamin B12)-binding domain
Family:Cobalamin (vitamin B12)-binding domain
75c2xdqA_
not modelled 26.9 13
PDB header:oxidoreductase
Chain: A: PDB Molecule:light-independent protochlorophyllide reductase subunit n;
PDBTitle: dark operative protochlorophyllide oxidoreductase (chln-chlb)2 complex
76d1edza2
not modelled 22.0 7
Fold:Aminoacid dehydrogenase-like, N-terminal domain
Superfamily:Aminoacid dehydrogenase-like, N-terminal domain
Family:Tetrahydrofolate dehydrogenase/cyclohydrolase
77c5ghrA_
not modelled 21.9 15
PDB header:dna binding protein/replication
Chain: A: PDB Molecule:ssdna-specific exonuclease;
PDBTitle: dna replication protein
78d1a9xb2
not modelled 21.8 26
Fold:Flavodoxin-like
Superfamily:Class I glutamine amidotransferase-like
Family:Class I glutamine amidotransferases (GAT)
79d1ccwa_
not modelled 20.2 16
Fold:Flavodoxin-like
Superfamily:Cobalamin (vitamin B12)-binding domain
Family:Cobalamin (vitamin B12)-binding domain
80d1a4ia2
not modelled 18.4 9
Fold:Aminoacid dehydrogenase-like, N-terminal domain
Superfamily:Aminoacid dehydrogenase-like, N-terminal domain
Family:Tetrahydrofolate dehydrogenase/cyclohydrolase
81c4hh3C_
not modelled 18.0 12
PDB header:flavoprotein/transcription
Chain: C: PDB Molecule:appa protein;
PDBTitle: structure of the appa-ppsr2 core complex from rb. sphaeroides
82c5ghrC_
not modelled 17.6 16
PDB header:dna binding protein/replication
Chain: C: PDB Molecule:ssdna-specific exonuclease;
PDBTitle: dna replication protein
83c6aqeB_
not modelled 15.8 17
PDB header:transferase
Chain: B: PDB Molecule:molecule a;
PDBTitle: crystal structure of ppk2 in complex with mg atp
84c5kzoA_
not modelled 15.6 44
PDB header:transcription
Chain: A: PDB Molecule:neurogenic locus notch homolog protein 1;
PDBTitle: notch1 transmembrane and associated juxtamembrane segment
85c1a4iB_
not modelled 15.5 9
PDB header:oxidoreductase
Chain: B: PDB Molecule:methylenetetrahydrofolate dehydrogenase /
PDBTitle: human tetrahydrofolate dehydrogenase / cyclohydrolase
86c6dspB_
not modelled 14.7 12
PDB header:signaling protein
Chain: B: PDB Molecule:autoinducer 2-binding protein lsrb;
PDBTitle: lsrb from clostridium saccharobutylicum in complex with ai-2
87c5n6yE_
not modelled 14.3 9
PDB header:oxidoreductase
Chain: E: PDB Molecule:nitrogenase vanadium-iron protein beta chain;
PDBTitle: azotobacter vinelandii vanadium nitrogenase
88d1q7ea_
not modelled 13.7 11
Fold:CoA-transferase family III (CaiB/BaiF)
Superfamily:CoA-transferase family III (CaiB/BaiF)
Family:CoA-transferase family III (CaiB/BaiF)
89c5o4jC_
not modelled 13.5 19
PDB header:transferase
Chain: C: PDB Molecule:hcgc;
PDBTitle: hcgc from methanococcus maripaludis cocrystallized with sah and2 pyridinol
90c2gm2A_
not modelled 13.1 14
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:conserved hypothetical protein;
PDBTitle: nmr structure of xanthomonas campestris xcc1710: northeast2 structural genomics consortium target xcr35
91c4yegA_
not modelled 12.8 6
PDB header:transferase
Chain: A: PDB Molecule:polyphosphate kinase 2;
PDBTitle: characterisation of polyphosphate kinase 2 from the intracellular2 pathogen francisella tularensis
92c3czqA_
not modelled 12.8 8
PDB header:transferase
Chain: A: PDB Molecule:putative polyphosphate kinase 2;
PDBTitle: crystal structure of putative polyphosphate kinase 2 from2 sinorhizobium meliloti
93c4oxqB_
not modelled 11.4 10
PDB header:metal binding protein
Chain: B: PDB Molecule:manganese abc transporter, periplasmic-binding protein
PDBTitle: structure of staphylococcus pseudintermedius metal-binding protein2 sita in complex with zinc
94c4u7pA_
not modelled 11.3 20
PDB header:transferase/transferase regulator
Chain: A: PDB Molecule:dna (cytosine-5)-methyltransferase 3a;
PDBTitle: crystal structure of dnmt3a-dnmt3l complex
95c4k40B_
not modelled 11.1 31
PDB header:hydrolase
Chain: B: PDB Molecule:gdsl-like lipase/acylhydrolase family protein;
PDBTitle: peptidoglycan o-acetylesterase in action, 0 min
96c5d5oE_
not modelled 11.0 34
PDB header:unknown function
Chain: E: PDB Molecule:uncharacterized protein mj0489;
PDBTitle: hcgc from methanocaldococcus jannaschii
97c2z4dA_
not modelled 10.9 20
PDB header:nuclear protein
Chain: A: PDB Molecule:26s proteasome regulatory subunit rpn13;
PDBTitle: nmr structures of yeast proteasome component rpn13
98c3dcjA_
not modelled 10.8 24
PDB header:transferase
Chain: A: PDB Molecule:probable 5'-phosphoribosylglycinamide formyltransferase
PDBTitle: crystal structure of glycinamide formyltransferase (purn) from2 mycobacterium tuberculosis in complex with 5-methyl-5,6,7,8-3 tetrahydrofolic acid derivative
99c3obiC_
not modelled 10.4 19
PDB header:hydrolase
Chain: C: PDB Molecule:formyltetrahydrofolate deformylase;
PDBTitle: crystal structure of a formyltetrahydrofolate deformylase (np_949368)2 from rhodopseudomonas palustris cga009 at 1.95 a resolution

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