Phyre Home Retrieve Phyre Job Id
Emailmdejesus@rockefeller.edu
DescriptionRVBD3046c_(-)_3407325_3407699
DateThu Aug 8 16:20:22 BST 2019
Unique Job ID2f3b5d90a0b841dd
SequenceVTKTFSHPHF ... Download FASTA
Job Typenormal
Job Expiry

Summary 

Top model
Image coloured by rainbow N → C terminus
Model dimensions (Å):X:39.260 Y:49.938 Z:44.661
Model (left) based on template c2lkyA_
Top template information
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:uncharacterized protein;
PDBTitle: solution structure of msmeg_1053, the second duf3349 annotated protein2 in the genome of mycobacterium smegmatis, seattle structural genomics3 center for infectious disease target mysma.17112.b
Confidence and coverage
Confidence:100.0% Coverage: 84%
104 residues ( 84% of your sequence) have been modelled with 100.0% confidence by the single highest scoring template.
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Sequence analysis 

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Domain analysis [Show] 

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#
Template Alignment Coverage3D Model Confidence
% i.d. Template Information
1c2lkyA_
100.0 38
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:uncharacterized protein;
PDBTitle: solution structure of msmeg_1053, the second duf3349 annotated protein2 in the genome of mycobacterium smegmatis, seattle structural genomics3 center for infectious disease target mysma.17112.b
2c2kvcA_
100.0 38
PDB header:unknown function
Chain: A: PDB Molecule:putative uncharacterized protein;
PDBTitle: solution structure of the mycobacterium tuberculosis protein rv0543c,2 a member of the duf3349 superfamily. seattle structural genomics3 center for infectious disease target mytud.17112.a
3c3ol4B_
100.0 37
PDB header:unknown function
Chain: B: PDB Molecule:putative uncharacterized protein;
PDBTitle: crystal structure of a putative uncharacterized protein from2 mycobacterium smegmatis, an ortholog of rv0543c
4c2m0nA_
100.0 54
PDB header:unknown function
Chain: A: PDB Molecule:putative uncharacterized protein;
PDBTitle: solution structure of a duf3349 annotated protein from mycobacterium2 abscessus, mab_3403c. seattle structural genomics center for3 infectious disease target myaba.17112.a.a2
5d1khda1
86.2 20
Fold:Methionine synthase domain-like
Superfamily:Nucleoside phosphorylase/phosphoribosyltransferase N-terminal domain
Family:Nucleoside phosphorylase/phosphoribosyltransferase N-terminal domain
6d1o17a1
86.1 9
Fold:Methionine synthase domain-like
Superfamily:Nucleoside phosphorylase/phosphoribosyltransferase N-terminal domain
Family:Nucleoside phosphorylase/phosphoribosyltransferase N-terminal domain
7d1hj3a1
83.0 30
Fold:Cytochrome c
Superfamily:Cytochrome c
Family:N-terminal (heme c) domain of cytochrome cd1-nitrite reductase
8d1v8ga1
79.4 20
Fold:Methionine synthase domain-like
Superfamily:Nucleoside phosphorylase/phosphoribosyltransferase N-terminal domain
Family:Nucleoside phosphorylase/phosphoribosyltransferase N-terminal domain
9d1qksa1
79.3 21
Fold:Cytochrome c
Superfamily:Cytochrome c
Family:N-terminal (heme c) domain of cytochrome cd1-nitrite reductase
10d1uoua1
76.9 18
Fold:Methionine synthase domain-like
Superfamily:Nucleoside phosphorylase/phosphoribosyltransferase N-terminal domain
Family:Nucleoside phosphorylase/phosphoribosyltransferase N-terminal domain
11d2tpta1
73.0 18
Fold:Methionine synthase domain-like
Superfamily:Nucleoside phosphorylase/phosphoribosyltransferase N-terminal domain
Family:Nucleoside phosphorylase/phosphoribosyltransferase N-terminal domain
12d1brwa1
71.8 20
Fold:Methionine synthase domain-like
Superfamily:Nucleoside phosphorylase/phosphoribosyltransferase N-terminal domain
Family:Nucleoside phosphorylase/phosphoribosyltransferase N-terminal domain
13c3mk7F_
61.6 9
PDB header:oxidoreductase
Chain: F: PDB Molecule:cytochrome c oxidase, cbb3-type, subunit p;
PDBTitle: the structure of cbb3 cytochrome oxidase
14c1o17A_
61.2 8
PDB header:transferase
Chain: A: PDB Molecule:anthranilate phosphoribosyltransferase;
PDBTitle: anthranilate phosphoribosyl-transferase (trpd)
15d1e2rb1
58.7 16
Fold:Cytochrome c
Superfamily:Cytochrome c
Family:N-terminal (heme c) domain of cytochrome cd1-nitrite reductase
16c4hkmA_
57.2 6
PDB header:transferase
Chain: A: PDB Molecule:anthranilate phosphoribosyltransferase;
PDBTitle: crystal structure of an anthranilate phosphoribosyltransferase (target2 id nysgrc-016600) from xanthomonas campestris
17c1ta9A_
57.1 19
PDB header:oxidoreductase
Chain: A: PDB Molecule:glycerol dehydrogenase;
PDBTitle: crystal structure of glycerol dehydrogenase from schizosaccharomyces2 pombe
18d1nira1
54.0 26
Fold:Cytochrome c
Superfamily:Cytochrome c
Family:N-terminal (heme c) domain of cytochrome cd1-nitrite reductase
19d1t1ea2
51.6 21
Fold:Ferredoxin-like
Superfamily:Protease propeptides/inhibitors
Family:Subtilase propeptides/inhibitors
20c3ee6A_
50.3 21
PDB header:hydrolase
Chain: A: PDB Molecule:tripeptidyl-peptidase 1;
PDBTitle: crystal structure analysis of tripeptidyl peptidase -i
21d2c8sa1
not modelled 50.1 13
Fold:Cytochrome c
Superfamily:Cytochrome c
Family:monodomain cytochrome c
22c2m29A_
not modelled 49.0 16
PDB header:metal binding protein
Chain: A: PDB Molecule:calcium-binding protein 4;
PDBTitle: nmr structure of ca2+ bound cabp4 n-domain
23c3ek7A_
not modelled 47.6 26
PDB header:fluorescent protein
Chain: A: PDB Molecule:myosin light chain kinase, green fluorescent protein,
PDBTitle: calcium-saturated gcamp2 dimer
24c3gr0D_
not modelled 46.9 18
PDB header:membrane protein
Chain: D: PDB Molecule:protein prgh;
PDBTitle: periplasmic domain of the t3ss inner membrane protein prgh from2 s.typhimurium (fragment 170-362)
25d1avsa_
not modelled 46.2 18
Fold:EF Hand-like
Superfamily:EF-hand
Family:Calmodulin-like
26c3edyA_
not modelled 44.9 22
PDB header:hydrolase
Chain: A: PDB Molecule:tripeptidyl-peptidase 1;
PDBTitle: crystal structure of the precursor form of human tripeptidyl-peptidase2 1
27c4oy4A_
not modelled 44.6 23
PDB header:calcium binding, fluorescent, transferas
Chain: A: PDB Molecule:chimera protein of calmodulin, gpf-like protein eosfp, and
PDBTitle: calcium-free campari v0.2
28d1ng6a_
not modelled 44.4 15
Fold:GatB/YqeY motif
Superfamily:GatB/YqeY motif
Family:GatB/YqeY domain
29c2k7bA_
not modelled 43.9 12
PDB header:metal binding protein
Chain: A: PDB Molecule:calcium-binding protein 1;
PDBTitle: nmr structure of mg2+-bound cabp1 n-domain
30c1khdD_
not modelled 42.5 17
PDB header:transferase
Chain: D: PDB Molecule:anthranilate phosphoribosyltransferase;
PDBTitle: crystal structure analysis of the anthranilate2 phosphoribosyltransferase from erwinia carotovora at 1.9 resolution3 (current name, pectobacterium carotovorum)
31c4muoB_
not modelled 41.1 8
PDB header:dna binding protein
Chain: B: PDB Molecule:uncharacterized protein ybib;
PDBTitle: the trpd2 enzyme from e.coli: ybib
32d1h9xa1
not modelled 40.9 18
Fold:Cytochrome c
Superfamily:Cytochrome c
Family:N-terminal (heme c) domain of cytochrome cd1-nitrite reductase
33d2pq3a1
not modelled 40.3 25
Fold:EF Hand-like
Superfamily:EF-hand
Family:Calmodulin-like
34c2ktgA_
not modelled 40.2 13
PDB header:ca-binding protein
Chain: A: PDB Molecule:calmodulin, putative;
PDBTitle: calmodulin like protein from entamoeba histolytica: solution structure2 and calcium binding properties of a partially folded protein
35c1t1eA_
not modelled 39.9 18
PDB header:hydrolase
Chain: A: PDB Molecule:kumamolisin;
PDBTitle: high resolution crystal structure of the intact pro-2 kumamolisin, a sedolisin type proteinase (previously3 called kumamolysin or kscp)
36c6ge2A_
not modelled 39.4 26
PDB header:hormone
Chain: A: PDB Molecule:exendin-4;
PDBTitle: exendin-4 based dual glp-1/glucagon receptor agonist
37c2zxyA_
not modelled 38.8 12
PDB header:oxygen binding, transport protein
Chain: A: PDB Molecule:cytochrome c552;
PDBTitle: crystal structure of cytochrome c555 from aquifex aeolicus
38c3u0kA_
not modelled 37.8 18
PDB header:fluorescent protein
Chain: A: PDB Molecule:rcamp;
PDBTitle: crystal structure of the genetically encoded calcium indicator rcamp
39c1brwB_
not modelled 37.4 20
PDB header:transferase
Chain: B: PDB Molecule:protein (pyrimidine nucleoside phosphorylase);
PDBTitle: the crystal structure of pyrimidine nucleoside2 phosphorylase in a closed conformation
40d1hzua1
not modelled 36.7 26
Fold:Cytochrome c
Superfamily:Cytochrome c
Family:N-terminal (heme c) domain of cytochrome cd1-nitrite reductase
41c2dsjA_
not modelled 36.2 10
PDB header:transferase
Chain: A: PDB Molecule:pyrimidine-nucleoside (thymidine) phosphorylase;
PDBTitle: crystal structure of project id tt0128 from thermus thermophilus hb8
42c1jrjA_
not modelled 35.9 42
PDB header:hormone/growth factor
Chain: A: PDB Molecule:exendin-4;
PDBTitle: solution structure of exendin-4 in 30-vol% trifluoroethanol
43c2xtsD_
not modelled 33.8 14
PDB header:oxidoreductase/electron transport
Chain: D: PDB Molecule:cytochrome;
PDBTitle: crystal structure of the sulfane dehydrogenase soxcd from paracoccus2 pantotrophus
44c5n1tB_
not modelled 33.6 15
PDB header:oxidoreductase
Chain: B: PDB Molecule:cytochrome c;
PDBTitle: crystal structure of complex between flavocytochrome c and copper2 chaperone copc from t. paradoxus
45c3cuqD_
not modelled 33.2 27
PDB header:protein transport
Chain: D: PDB Molecule:vacuolar protein-sorting-associated protein 25;
PDBTitle: integrated structural and functional model of the human escrt-ii2 complex
46c2zmeD_
not modelled 33.2 27
PDB header:protein transport
Chain: D: PDB Molecule:vacuolar protein-sorting-associated protein 25;
PDBTitle: integrated structural and functional model of the human escrt-ii2 complex
47c5mwwA_
not modelled 32.4 25
PDB header:transferase
Chain: A: PDB Molecule:rna polymerase sigma factor siga;
PDBTitle: sigma1.1 domain of sigmaa from bacillus subtilis
48d1dvha_
not modelled 31.5 9
Fold:Cytochrome c
Superfamily:Cytochrome c
Family:monodomain cytochrome c
49c1h1oA_
not modelled 30.5 14
PDB header:electron transport
Chain: A: PDB Molecule:cytochrome c-552;
PDBTitle: acidithiobacillus ferrooxidans cytochrome c4 structure2 supports a complex-induced tuning of electron transfer
50c1wvoA_
not modelled 30.4 41
PDB header:transferase
Chain: A: PDB Molecule:sialic acid synthase;
PDBTitle: solution structure of rsgi ruh-029, an antifreeze protein2 like domain in human n-acetylneuraminic acid phosphate3 synthase gene.
51c4n6cB_
not modelled 29.6 17
PDB header:structural genomics, unknown function
Chain: B: PDB Molecule:uncharacterized protein;
PDBTitle: crystal structure of the b1rzq2 protein from streptococcus pneumoniae.2 northeast structural genomics consortium (nesg) target spr36.
52c5zorA_
not modelled 29.3 29
PDB header:metal binding protein
Chain: A: PDB Molecule:centrin, putative;
PDBTitle: solution structure of centrin4 from trypanosoma brucei
53c6jtdB_
not modelled 29.2 12
PDB header:transferase
Chain: B: PDB Molecule:c-glycosyltransferase;
PDBTitle: crystal structure of tccgt1 in complex with udp
54c4ga5H_
not modelled 27.4 18
PDB header:transferase
Chain: H: PDB Molecule:putative thymidine phosphorylase;
PDBTitle: crystal structure of amp phosphorylase c-terminal deletion mutant in2 the apo-form
55c1c8aA_
not modelled 27.3 22
PDB header:antifreeze protein
Chain: A: PDB Molecule:protein (antifreeze protein type iii);
PDBTitle: nmr structure of intramolecular dimer antifreeze protein2 rd3, 40 sa structures
56c3h5qA_
not modelled 26.9 13
PDB header:transferase
Chain: A: PDB Molecule:pyrimidine-nucleoside phosphorylase;
PDBTitle: crystal structure of a putative pyrimidine-nucleoside phosphorylase2 from staphylococcus aureus
57c4i66A_
not modelled 26.5 13
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:uncharacterized protein hoch_4089;
PDBTitle: crystal structure of hoch_4089 protein from haliangium ochraceum
58d3nlaa_
not modelled 26.4 28
Fold:beta-clip
Superfamily:AFP III-like domain
Family:AFP III-like domain
59d1c8aa2
not modelled 26.2 22
Fold:beta-clip
Superfamily:AFP III-like domain
Family:AFP III-like domain
60d1xb4a1
not modelled 25.1 18
Fold:DNA/RNA-binding 3-helical bundle
Superfamily:"Winged helix" DNA-binding domain
Family:Vacuolar sorting protein domain
61c5tdyD_
not modelled 25.0 23
PDB header:motor protein
Chain: D: PDB Molecule:flagellar motor switch protein flig;
PDBTitle: structure of cofolded flifc:flign complex from thermotoga maritima
62c5xj0Y_
not modelled 24.9 33
PDB header:transferase/transcription
Chain: Y: PDB Molecule:gp76;
PDBTitle: t. thermophilus rna polymerase holoenzyme bound with gp39 and gp76
63d2vcha1
not modelled 24.8 7
Fold:UDP-Glycosyltransferase/glycogen phosphorylase
Superfamily:UDP-Glycosyltransferase/glycogen phosphorylase
Family:UDPGT-like
64c2k6xA_
not modelled 24.6 17
PDB header:transcription
Chain: A: PDB Molecule:rna polymerase sigma factor rpod;
PDBTitle: autoregulation of a group 1 bacterial sigma factor involves2 the formation of a region 1.1- induced compacted structure
65c2bpqB_
not modelled 24.2 16
PDB header:transferase
Chain: B: PDB Molecule:anthranilate phosphoribosyltransferase;
PDBTitle: anthranilate phosphoribosyltransferase (trpd) from2 mycobacterium tuberculosis (apo structure)
66c3kblA_
not modelled 24.1 36
PDB header:protein binding
Chain: A: PDB Molecule:female germline-specific tumor suppressor gld-1;
PDBTitle: crystal structure of the gld-1 homodimerization domain from2 caenorhabditis elegans n169a mutant at 2.28 a resolution
67d1fcdc1
not modelled 23.9 16
Fold:Cytochrome c
Superfamily:Cytochrome c
Family:Two-domain cytochrome c
68c2j0fC_
not modelled 23.9 16
PDB header:transferase
Chain: C: PDB Molecule:thymidine phosphorylase;
PDBTitle: structural basis for non-competitive product inhibition in2 human thymidine phosphorylase: implication for drug design
69c4j20B_
not modelled 23.8 29
PDB header:oxidoreductase
Chain: B: PDB Molecule:cytochrome c-555;
PDBTitle: x-ray structure of the cytochrome c-554 from chlorobaculum tepidum
70c1vquB_
not modelled 23.7 12
PDB header:transferase
Chain: B: PDB Molecule:anthranilate phosphoribosyltransferase 2;
PDBTitle: crystal structure of anthranilate phosphoribosyltransferase 22 (17130499) from nostoc sp. at 1.85 a resolution
71c3ecjC_
not modelled 23.5 13
PDB header:oxidoreductase
Chain: C: PDB Molecule:protein (homoprotocatechuate 2,3-dioxygenase);
PDBTitle: structure of e323l mutant of homoprotocatechuate 2,3-dioxygenase from2 brevibacterium fuscum at 1.65a resolution
72c1zswA_
not modelled 23.3 9
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:glyoxalase family protein;
PDBTitle: crystal structure of bacillus cereus metallo protein from glyoxalase2 family
73d1c53a_
not modelled 23.2 13
Fold:Cytochrome c
Superfamily:Cytochrome c
Family:monodomain cytochrome c
74d1c75a_
not modelled 23.2 21
Fold:Cytochrome c
Superfamily:Cytochrome c
Family:monodomain cytochrome c
75c4dnnB_
not modelled 22.7 36
PDB header:splicing
Chain: B: PDB Molecule:protein quaking;
PDBTitle: crystal structure of the quaking qua1 homodimerization domain
76d2acva1
not modelled 22.5 18
Fold:UDP-Glycosyltransferase/glycogen phosphorylase
Superfamily:UDP-Glycosyltransferase/glycogen phosphorylase
Family:UDPGT-like
77c3deeA_
not modelled 22.4 8
PDB header:transcription
Chain: A: PDB Molecule:putative regulatory protein;
PDBTitle: crystal structure of a putative regulatory protein involved in2 transcription (ngo1945) from neisseria gonorrhoeae fa 1090 at 2.25 a3 resolution
78c4i2yB_
not modelled 22.3 24
PDB header:fluorescent protein
Chain: B: PDB Molecule:rgeco1;
PDBTitle: crystal structure of the genetically encoded calcium indicator rgeco1
79c2zzsW_
not modelled 22.3 14
PDB header:electron transport
Chain: W: PDB Molecule:
PDBTitle: crystal structure of cytochrome c554 from vibrio2 parahaemolyticus strain rimd2210633
80c2zooA_
not modelled 22.0 19
PDB header:oxidoreductase
Chain: A: PDB Molecule:probable nitrite reductase;
PDBTitle: crystal structure of nitrite reductase from pseudoalteromonas2 haloplanktis tac125
81d1zaca_
not modelled 22.0 19
Fold:EF Hand-like
Superfamily:EF-hand
Family:Calmodulin-like
82c3omdB_
not modelled 21.8 11
PDB header:structural genomics, unknown function
Chain: B: PDB Molecule:uncharacterized protein;
PDBTitle: crystal structure of unknown function protein from leptospirillum2 rubarum
83c6hwhj_
not modelled 21.8 21
PDB header:electron transport
Chain: J: PDB Molecule:co-purified unknown peptide built as polyala;
PDBTitle: structure of a functional obligate respiratory supercomplex from2 mycobacterium smegmatis
84d1opsa_
not modelled 21.4 28
Fold:beta-clip
Superfamily:AFP III-like domain
Family:AFP III-like domain
85d1a56a_
not modelled 21.4 9
Fold:Cytochrome c
Superfamily:Cytochrome c
Family:monodomain cytochrome c
86c2lv7A_
not modelled 21.4 13
PDB header:metal binding protein
Chain: A: PDB Molecule:calcium-binding protein 7;
PDBTitle: solution structure of ca2+-bound cabp7 n-terminal doman
87d1zswa2
not modelled 21.1 9
Fold:Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase
Superfamily:Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase
Family:BC1024-like
88c4ax3A_
not modelled 21.0 6
PDB header:oxidoreductase
Chain: A: PDB Molecule:copper-containing nitrite reductase;
PDBTitle: structure of three-domain heme-cu nitrite reductase from ralstonia2 pickettii at 1.6 a resolution
89d1m70a2
not modelled 20.3 11
Fold:Cytochrome c
Superfamily:Cytochrome c
Family:Two-domain cytochrome c
90c2ybvN_
not modelled 20.0 28
PDB header:lyase
Chain: N: PDB Molecule:ribulose bisphosphate carboxylase small subunit;
PDBTitle: structure of rubisco from thermosynechococcus elongatus
91c6adqC_
not modelled 19.9 18
PDB header:electron transport
Chain: C: PDB Molecule:cytochrome bc1 complex cytochrome c subunit;
PDBTitle: respiratory complex ciii2civ2sod2 from mycobacterium smegmatis
92c2n39A_
not modelled 19.9 27
PDB header:dna binding protein
Chain: A: PDB Molecule:chromodomain-helicase-dna-binding protein 1;
PDBTitle: nmr solution structure of a c-terminal domain of the chromodomain2 helicase dna-binding protein 1
93c5v2kA_
not modelled 19.8 12
PDB header:transferase
Chain: A: PDB Molecule:udp-glycosyltransferase 74f2;
PDBTitle: crystal structure of udp-glucosyltransferase, ugt74f2 (t15a), with udp2 and 2-bromobenzoic acid
94c4pwaA_
not modelled 19.8 24
PDB header:electron transport
Chain: A: PDB Molecule:putative cytochrome c;
PDBTitle: crystal structure of the c-type cytochrome soru from sinorhizobium2 meliloti
95d1rbli_
not modelled 19.8 32
Fold:RuBisCO, small subunit
Superfamily:RuBisCO, small subunit
Family:RuBisCO, small subunit
96c2i2rK_
not modelled 19.7 40
PDB header:transport protein
Chain: K: PDB Molecule:potassium voltage-gated channel subfamily d member 3;
PDBTitle: crystal structure of the kchip1/kv4.3 t1 complex
97d1f54a_
not modelled 19.5 23
Fold:EF Hand-like
Superfamily:EF-hand
Family:Calmodulin-like
98d2ji7a1
not modelled 19.2 22
Fold:DHS-like NAD/FAD-binding domain
Superfamily:DHS-like NAD/FAD-binding domain
Family:Pyruvate oxidase and decarboxylase, middle domain
99d2ns0a1
not modelled 19.1 22
Fold:DNA/RNA-binding 3-helical bundle
Superfamily:"Winged helix" DNA-binding domain
Family:RHA1 ro06458-like

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