Phyre Home Retrieve Phyre Job Id
Emailmdejesus@rockefeller.edu
DescriptionRVBD3060c_(-)_3421738_3423210
DateThu Aug 8 16:20:23 BST 2019
Unique Job IDb3d9563127e53fca
SequenceMSTEPDAVWT ... Download FASTA
Job Typenormal
Job Expiry

Summary 

Top model
Image coloured by rainbow N → C terminus
Model dimensions (Å):X:58.515 Y:64.445 Z:47.149
Model (left) based on template c4p96B_
Top template information
PDB header:transcription
Chain: B: PDB Molecule:fatty acid metabolism regulator protein;
PDBTitle: fadr, fatty acid responsive transcription factor from vibrio cholerae
Confidence and coverage
Confidence:100.0% Coverage: 46%
223 residues ( 46% of your sequence) have been modelled with 100.0% confidence by the single highest scoring template.
Additional confident templates have been detected (see Domain analysis) which cover other regions of your sequence.
358 residues ( 73%) could be modelled at >90% confidence using multiple-templates.
You may wish to try resubmitting your sequence in "intensive" mode to model more of your sequence.
3D viewing
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Sequence analysis 

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Secondary structure and disorder prediction [Show] 

Domain analysis [Show] 

Detailed template information [Hide] 

 

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Template Alignment Coverage3D Model Confidence
% i.d. Template Information
1c4p96B_
100.0 19
PDB header:transcription
Chain: B: PDB Molecule:fatty acid metabolism regulator protein;
PDBTitle: fadr, fatty acid responsive transcription factor from vibrio cholerae
2c3fmsA_
100.0 16
PDB header:transcription regulator
Chain: A: PDB Molecule:transcriptional regulator, gntr family;
PDBTitle: crystal structure of tm0439, a gntr transcriptional regulator
3c4p9fA_
100.0 14
PDB header:transcription
Chain: A: PDB Molecule:hth-type transcriptional regulator mcbr;
PDBTitle: e. coli mcbr/yncc
4c6ep3B_
100.0 15
PDB header:transcription
Chain: B: PDB Molecule:lmo0651 protein;
PDBTitle: lar controls the expression of the listeria monocytogenes agr system2 and mediates virulence.
5c1e2xA_
100.0 18
PDB header:transcriptional regulation
Chain: A: PDB Molecule:fatty acid metabolism regulator protein;
PDBTitle: fadr, fatty acid responsive transcription factor from e.2 coli
6c6az6B_
100.0 24
PDB header:transcription
Chain: B: PDB Molecule:gntr family transcriptional regulator;
PDBTitle: streptococcus agalactiae gntr
7c2di3A_
100.0 23
PDB header:transcription
Chain: A: PDB Molecule:bacterial regulatory proteins, gntr family;
PDBTitle: crystal structure of the transcriptional factor cgl29152 from corynebacterium glutamicum
8c3ihuA_
100.0 15
PDB header:transcription regulator
Chain: A: PDB Molecule:transcriptional regulator, gntr family;
PDBTitle: crystal structure of dna binding protein (yp_298823.1) from ralstonia2 eutropha jmp134 at 1.92 a resolution
9c2hs5A_
100.0 16
PDB header:transcription regulator
Chain: A: PDB Molecule:putative transcriptional regulator gntr;
PDBTitle: structural genomics, the crystal structure of a putative2 transcriptional regulator gntr from rhodococcus sp. rha1
10c3c7jA_
100.0 17
PDB header:transcription regulator
Chain: A: PDB Molecule:transcriptional regulator, gntr family;
PDBTitle: crystal structure of transcriptional regulator (gntr family member)2 from pseudomonas syringae pv. tomato str. dc3000
11c5tpmD_
99.8 22
PDB header:hydrolase
Chain: D: PDB Molecule:pyruvate dehydrogenase complex repressor;
PDBTitle: 2.8 angstrom crystal structure of the c-terminal dimerization domain2 of transcriptional regulator pdhr from escherichia coli.
12d1hw1a2
99.8 16
Fold:GntR ligand-binding domain-like
Superfamily:GntR ligand-binding domain-like
Family:GntR ligand-binding domain-like
13c4hamA_
99.8 16
PDB header:transcription
Chain: A: PDB Molecule:lmo2241 protein;
PDBTitle: crystal structure of transcriptional antiterminator from listeria2 monocytogenes egd-e
14c2du9A_
99.8 17
PDB header:transcription
Chain: A: PDB Molecule:predicted transcriptional regulators;
PDBTitle: crystal structure of the transcriptional factor from c.glutamicum
15c4r1hA_
99.8 17
PDB header:transcription regulator
Chain: A: PDB Molecule:lmo0741 protein;
PDBTitle: gntr family transcriptional regulator from listeria monocytogenes
16c3sxkB_
99.8 17
PDB header:transcription regulator
Chain: B: PDB Molecule:transcriptional regulator, gntr family;
PDBTitle: zn2+-bound fcd domain of tm0439, a putative transcriptional regulator
17d2hs5a2
99.8 14
Fold:GntR ligand-binding domain-like
Superfamily:GntR ligand-binding domain-like
Family:GntR ligand-binding domain-like
18c6sbsB_
99.8 16
PDB header:transcription
Chain: B: PDB Molecule:regulatory protein;
PDBTitle: ytra from sulfolobus acidocaldarius, a gntr-family transcription2 factor
19c3by6C_
99.8 15
PDB header:transcription regulator
Chain: C: PDB Molecule:predicted transcriptional regulator;
PDBTitle: crystal structure of a transcriptional regulator from oenococcus oeni
20c3neuA_
99.7 16
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:lin1836 protein;
PDBTitle: the crystal structure of a functionally-unknown protein lin1836 from2 listeria innocua clip11262
21c3bwgA_
not modelled 99.7 24
PDB header:transcription regulator
Chain: A: PDB Molecule:uncharacterized hth-type transcriptional regulator yydk;
PDBTitle: the crystal structure of possible transcriptional regulator yydk from2 bacillus subtilis subsp. subtilis str. 168
22c3edpB_
not modelled 99.7 26
PDB header:structural genomics, unknown function
Chain: B: PDB Molecule:lin2111 protein;
PDBTitle: the crystal structure of the protein lin2111 (functionally unknown)2 from listeria innocua clip11262
23c4zs8A_
not modelled 99.7 18
PDB header:transcription
Chain: A: PDB Molecule:hth-type transcriptional repressor dasr;
PDBTitle: crystal structure of ligand-free, full length dasr
24c3eetA_
not modelled 99.7 15
PDB header:transcription regulator
Chain: A: PDB Molecule:putative gntr-family transcriptional regulator;
PDBTitle: crystal structure of putative gntr-family transcriptional2 regulator
25d1v4ra1
not modelled 99.7 17
Fold:DNA/RNA-binding 3-helical bundle
Superfamily:"Winged helix" DNA-binding domain
Family:GntR-like transcriptional regulators
26c5kvrA_
not modelled 99.7 29
PDB header:translation
Chain: A: PDB Molecule:pyruvate dehydrogenase complex repressor;
PDBTitle: x-ray crystal structure of a fragment (1-75) of a transcriptional2 regulator pdhr from escherichia coli cft073
27c3f8mA_
not modelled 99.6 20
PDB header:transcription
Chain: A: PDB Molecule:gntr-family protein transcriptional regulator;
PDBTitle: crystal structure of phnf from mycobacterium smegmatis
28c4egzA_
not modelled 99.6 18
PDB header:transcription/dna
Chain: A: PDB Molecule:arabinose metabolism transcriptional repressor;
PDBTitle: crystal structure of arar(dbd) in complex with operator orr3
29c4n0bA_
not modelled 99.6 16
PDB header:transcription activator
Chain: A: PDB Molecule:hth-type transcriptional regulatory protein gabr;
PDBTitle: crystal structure of bacillus subtilis gabr, an autorepressor and2 transcriptional activator of gabt
30d1hw1a1
not modelled 99.6 19
Fold:DNA/RNA-binding 3-helical bundle
Superfamily:"Winged helix" DNA-binding domain
Family:GntR-like transcriptional regulators
31c3ic7A_
not modelled 99.6 13
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:putative transcriptional regulator;
PDBTitle: crystal structure of putative transcriptional regulator of gntr family2 from bacteroides thetaiotaomicron
32d3bwga1
not modelled 99.6 24
Fold:DNA/RNA-binding 3-helical bundle
Superfamily:"Winged helix" DNA-binding domain
Family:GntR-like transcriptional regulators
33d2hs5a1
not modelled 99.6 26
Fold:DNA/RNA-binding 3-helical bundle
Superfamily:"Winged helix" DNA-binding domain
Family:GntR-like transcriptional regulators
34c3tqnC_
not modelled 99.5 10
PDB header:transcription
Chain: C: PDB Molecule:transcriptional regulator, gntr family;
PDBTitle: structure of the transcriptional regulator of the gntr family, from2 coxiella burnetii.
35c2wv0H_
not modelled 99.2 14
PDB header:transcription
Chain: H: PDB Molecule:hth-type transcriptional repressor yvoa;
PDBTitle: crystal structure of the gntr-hutc family member yvoa from2 bacillus subtilis
36c2h09A_
not modelled 98.1 17
PDB header:transcription
Chain: A: PDB Molecule:transcriptional regulator mntr;
PDBTitle: crystal structure of diphtheria toxin repressor like protein2 from e. coli
37c3hruA_
not modelled 97.8 12
PDB header:transcription
Chain: A: PDB Molecule:metalloregulator scar;
PDBTitle: crystal structure of scar with bound zn2+
38c2it0A_
not modelled 97.8 17
PDB header:transcription/dna
Chain: A: PDB Molecule:iron-dependent repressor ider;
PDBTitle: crystal structure of a two-domain ider-dna complex crystal2 form ii
39c1f5tA_
not modelled 97.7 14
PDB header:transcription/dna
Chain: A: PDB Molecule:diphtheria toxin repressor;
PDBTitle: diphtheria tox repressor (c102d mutant) complexed with2 nickel and dtxr consensus binding sequence
40c3k69A_
not modelled 97.7 19
PDB header:transcription
Chain: A: PDB Molecule:putative transcription regulator;
PDBTitle: crystal structure of a putative transcriptional regulator (lp_0360)2 from lactobacillus plantarum at 1.95 a resolution
41c2y75F_
not modelled 97.6 17
PDB header:transcription
Chain: F: PDB Molecule:hth-type transcriptional regulator cymr;
PDBTitle: the structure of cymr (yrzc) the global cysteine regulator of b.2 subtilis
42c3lwfD_
not modelled 97.5 13
PDB header:transcription regulator
Chain: D: PDB Molecule:putative transcriptional regulator;
PDBTitle: crystal structure of putative transcriptional regulator (np_470886.1)2 from listeria innocua at 2.06 a resolution
43c4cicB_
not modelled 97.5 17
PDB header:transcription
Chain: B: PDB Molecule:transcriptional regulator, badm/rrf2 family;
PDBTitle: t. potens iscr
44d1jhfa1
not modelled 97.5 17
Fold:DNA/RNA-binding 3-helical bundle
Superfamily:"Winged helix" DNA-binding domain
Family:LexA repressor, N-terminal DNA-binding domain
45d1biaa1
not modelled 97.4 20
Fold:DNA/RNA-binding 3-helical bundle
Superfamily:"Winged helix" DNA-binding domain
Family:Biotin repressor-like
46c6hsdB_
not modelled 97.4 23
PDB header:transcription
Chain: B: PDB Molecule:rrf2 family transcriptional regulator;
PDBTitle: crystal structure of the oxidized form of the transcription regulator2 rsrr
47c3t8tA_
not modelled 97.4 20
PDB header:unknown function
Chain: A: PDB Molecule:staphylococcus aureus cymr (oxidized form);
PDBTitle: crystal structure of staphylococcus aureus cymr oxidized form
48c4hf1B_
not modelled 97.3 17
PDB header:transcription/dna
Chain: B: PDB Molecule:hth-type transcriptional regulator iscr;
PDBTitle: crystal structure of iscr bound to its promoter
49c1g3wA_
not modelled 97.3 16
PDB header:gene regulation
Chain: A: PDB Molecule:diphtheria toxin repressor;
PDBTitle: cd-cys102ser dtxr
50c3bj6B_
not modelled 97.3 16
PDB header:transcription regulator
Chain: B: PDB Molecule:transcriptional regulator, marr family;
PDBTitle: crystal structure of marr family transcription regulator sp03579
51c3zmdD_
not modelled 97.3 11
PDB header:transcription
Chain: D: PDB Molecule:putative transcriptional regulator;
PDBTitle: crystal structure of absc, a marr family transcriptional2 regulator from streptomyces coelicolor
52d1stza1
not modelled 97.2 15
Fold:DNA/RNA-binding 3-helical bundle
Superfamily:"Winged helix" DNA-binding domain
Family:Heat-inducible transcription repressor HrcA, N-terminal domain
53c6jbxB_
not modelled 97.1 10
PDB header:transcription/dna
Chain: B: PDB Molecule:fatty acid biosynthesis transcriptional regulator;
PDBTitle: crystal structure of streptococcus pneumoniae fabt in complex with dna
54c5jlsA_
not modelled 97.1 9
PDB header:transcription
Chain: A: PDB Molecule:adhesin competence repressor;
PDBTitle: crystal structure of adhesin competence repressor (adcr) from2 streptococcus pyogenes (c-terminally his tagged)
55c5eriA_
not modelled 97.1 6
PDB header:transcription
Chain: A: PDB Molecule:marr family transcriptional regulator;
PDBTitle: marr protein from peptoclostridium difficile da00132
56c3ctaA_
not modelled 97.1 13
PDB header:transferase
Chain: A: PDB Molecule:riboflavin kinase;
PDBTitle: crystal structure of riboflavin kinase from thermoplasma acidophilum
57c3zplE_
not modelled 97.1 13
PDB header:transcription/dna
Chain: E: PDB Molecule:putative marr-family transcriptional repressor;
PDBTitle: crystal structure of sco3205, a marr family transcriptional regulator2 from streptomyces coelicolor, in complex with dna
58c4o6jA_
not modelled 97.0 13
PDB header:metal binding protein
Chain: A: PDB Molecule:iron-dependent transcription repressor related protein;
PDBTitle: crystal sturucture of t. acidophilum ider
59c3bjaA_
not modelled 97.0 11
PDB header:transcription regulator
Chain: A: PDB Molecule:transcriptional regulator, marr family, putative;
PDBTitle: crystal structure of putative marr-like transcription regulator2 (np_978771.1) from bacillus cereus atcc 10987 at 2.38 a resolution
60c2x4hA_
not modelled 97.0 15
PDB header:transcription
Chain: A: PDB Molecule:hypothetical protein sso2273;
PDBTitle: crystal structure of the hypothetical protein sso2273 from2 sulfolobus solfataricus
61d2fbha1
not modelled 97.0 17
Fold:DNA/RNA-binding 3-helical bundle
Superfamily:"Winged helix" DNA-binding domain
Family:MarR-like transcriptional regulators
62d3broa1
not modelled 97.0 12
Fold:DNA/RNA-binding 3-helical bundle
Superfamily:"Winged helix" DNA-binding domain
Family:MarR-like transcriptional regulators
63c5cviB_
not modelled 96.9 13
PDB header:transcription regulator
Chain: B: PDB Molecule:slor;
PDBTitle: structure of the manganese regulator slor
64d1g3wa1
not modelled 96.9 13
Fold:DNA/RNA-binding 3-helical bundle
Superfamily:"Winged helix" DNA-binding domain
Family:Iron-dependent repressor protein
65c3r0aB_
not modelled 96.9 9
PDB header:transcription regulator
Chain: B: PDB Molecule:putative transcriptional regulator;
PDBTitle: possible transcriptional regulator from methanosarcina mazei go1 (gi2 21227196)
66c3e6mD_
not modelled 96.9 12
PDB header:transcription regulator
Chain: D: PDB Molecule:marr family transcriptional regulator;
PDBTitle: the crystal structure of a marr family transcriptional2 regulator from silicibacter pomeroyi dss.
67d2isya1
not modelled 96.9 15
Fold:DNA/RNA-binding 3-helical bundle
Superfamily:"Winged helix" DNA-binding domain
Family:Iron-dependent repressor protein
68d1i5za1
not modelled 96.9 9
Fold:DNA/RNA-binding 3-helical bundle
Superfamily:"Winged helix" DNA-binding domain
Family:CAP C-terminal domain-like
69c2gxgA_
not modelled 96.8 13
PDB header:transcription
Chain: A: PDB Molecule:146aa long hypothetical transcriptional regulator;
PDBTitle: crystal structure of emrr homolog from hyperthermophilic archaea2 sulfolobus tokodaii strain7
70c2ev5B_
not modelled 96.8 17
PDB header:transcription
Chain: B: PDB Molecule:transcriptional regulator mntr;
PDBTitle: bacillus subtilis manganese transport regulator (mntr)2 bound to calcium
71c4mnuA_
not modelled 96.8 12
PDB header:transcription regulator
Chain: A: PDB Molecule:slya-like transcription regulator;
PDBTitle: crystal structure of uncharacterized slya-like transcription regulator2 from listeria monocytogenes
72c5yhxH_
not modelled 96.8 13
PDB header:metal binding protein
Chain: H: PDB Molecule:zinc transport transcriptional regulator;
PDBTitle: structure of lactococcus lactis zitr, wild type
73d1xd7a_
not modelled 96.8 14
Fold:DNA/RNA-binding 3-helical bundle
Superfamily:"Winged helix" DNA-binding domain
Family:Transcriptional regulator Rrf2
74c2rdpA_
not modelled 96.8 13
PDB header:transcription
Chain: A: PDB Molecule:putative transcriptional regulator marr;
PDBTitle: the structure of a marr family protein from bacillus2 stearothermophilus
75c3nqoB_
not modelled 96.8 10
PDB header:transcription
Chain: B: PDB Molecule:marr-family transcriptional regulator;
PDBTitle: crystal structure of a marr family transcriptional regulator (cd1569)2 from clostridium difficile 630 at 2.20 a resolution
76d1sd4a_
not modelled 96.8 15
Fold:DNA/RNA-binding 3-helical bundle
Superfamily:"Winged helix" DNA-binding domain
Family:Penicillinase repressor
77c2v79B_
not modelled 96.7 13
PDB header:dna binding protein
Chain: B: PDB Molecule:dna replication protein dnad;
PDBTitle: crystal structure of the n-terminal domain of dnad from bacillus2 subtilis
78c1fx7C_
not modelled 96.7 16
PDB header:signaling protein
Chain: C: PDB Molecule:iron-dependent repressor ider;
PDBTitle: crystal structure of the iron-dependent regulator (ider) from2 mycobacterium tuberculosis
79d1lnwa_
not modelled 96.7 11
Fold:DNA/RNA-binding 3-helical bundle
Superfamily:"Winged helix" DNA-binding domain
Family:MarR-like transcriptional regulators
80c3rkxA_
not modelled 96.7 8
PDB header:ligase
Chain: A: PDB Molecule:biotin-[acetyl-coa-carboxylase] ligase;
PDBTitle: structural characterisation of staphylococcus aureus biotin protein2 ligase
81d1lj9a_
not modelled 96.7 10
Fold:DNA/RNA-binding 3-helical bundle
Superfamily:"Winged helix" DNA-binding domain
Family:MarR-like transcriptional regulators
82c3fm5D_
not modelled 96.7 15
PDB header:transcription regulator
Chain: D: PDB Molecule:transcriptional regulator;
PDBTitle: x-ray crystal structure of transcriptional regulator (marr family)2 from rhodococcus sp. rha1
83d1ku9a_
not modelled 96.7 15
Fold:DNA/RNA-binding 3-helical bundle
Superfamily:"Winged helix" DNA-binding domain
Family:DNA-binding protein Mj223
84c2qwwB_
not modelled 96.6 17
PDB header:transcription
Chain: B: PDB Molecule:transcriptional regulator, marr family;
PDBTitle: crystal structure of multiple antibiotic-resistance repressor (marr)2 (yp_013417.1) from listeria monocytogenes 4b f2365 at 2.07 a3 resolution
85c5jbrA_
not modelled 96.6 14
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:uncharacterized protein bcav_2135;
PDBTitle: crystal structure of uncharacterized protein bcav_2135 from2 beutenbergia cavernae
86c5e1xA_
not modelled 96.6 13
PDB header:transcription
Chain: A: PDB Molecule:transcriptional regulator, marr family;
PDBTitle: crystal structure of the organohalide sensing rdhr-cbdba16252 transcriptional regulator in the 3,4-dichlorophenol bound form
87d1ylfa1
not modelled 96.6 13
Fold:DNA/RNA-binding 3-helical bundle
Superfamily:"Winged helix" DNA-binding domain
Family:Transcriptional regulator Rrf2
88c2nnnB_
not modelled 96.5 15
PDB header:transcription
Chain: B: PDB Molecule:probable transcriptional regulator;
PDBTitle: crystal structure of probable transcriptional regulator from2 pseudomonas aeruginosa
89c4fhtA_
not modelled 96.5 18
PDB header:transcription
Chain: A: PDB Molecule:pcav transcriptional regulator;
PDBTitle: crystal structure of the pcav transcriptional regulator from2 streptomyces coelicolor in complex with its natural ligand
90d1okra_
not modelled 96.5 13
Fold:DNA/RNA-binding 3-helical bundle
Superfamily:"Winged helix" DNA-binding domain
Family:Penicillinase repressor
91d1jgsa_
not modelled 96.5 9
Fold:DNA/RNA-binding 3-helical bundle
Superfamily:"Winged helix" DNA-binding domain
Family:MarR-like transcriptional regulators
92d2g9wa1
not modelled 96.5 11
Fold:DNA/RNA-binding 3-helical bundle
Superfamily:"Winged helix" DNA-binding domain
Family:Penicillinase repressor
93d2a61a1
not modelled 96.5 11
Fold:DNA/RNA-binding 3-helical bundle
Superfamily:"Winged helix" DNA-binding domain
Family:MarR-like transcriptional regulators
94d2d1ha1
not modelled 96.5 9
Fold:DNA/RNA-binding 3-helical bundle
Superfamily:"Winged helix" DNA-binding domain
Family:TrmB-like
95c5ey0A_
not modelled 96.5 24
PDB header:transcription
Chain: A: PDB Molecule:gtp-sensing transcriptional pleiotropic repressor cody;
PDBTitle: crystal structure of cody from staphylococcus aureus with gtp and ile
96d2etha1
not modelled 96.4 10
Fold:DNA/RNA-binding 3-helical bundle
Superfamily:"Winged helix" DNA-binding domain
Family:MarR-like transcriptional regulators
97c6cmvA_
not modelled 96.4 16
PDB header:gene regulation
Chain: A: PDB Molecule:transcriptional regulator lrs14-like protein;
PDBTitle: crystal structure of archaeal biofilm regulator (abfr2) from2 sulfolobus acidocaldarius
98d1s3ja_
not modelled 96.4 11
Fold:DNA/RNA-binding 3-helical bundle
Superfamily:"Winged helix" DNA-binding domain
Family:MarR-like transcriptional regulators
99c4xrfA_
not modelled 96.4 11
PDB header:transcription
Chain: A: PDB Molecule:transcriptional regulator, marr family;
PDBTitle: crystal structure of mepr like protein complexed with pseudoligands
100c3k0lA_
not modelled 96.3 13
PDB header:transcription regulator
Chain: A: PDB Molecule:repressor protein;
PDBTitle: crystal structure of putative marr family transcriptional2 regulator from acinetobacter sp. adp
101c3tgnA_
not modelled 96.3 15
PDB header:transcription
Chain: A: PDB Molecule:adc operon repressor adcr;
PDBTitle: crystal structure of the zinc-dependent marr family transcriptional2 regulator adcr in the zn(ii)-bound state
102c5bqtC_
not modelled 96.3 15
PDB header:dna binding protein
Chain: C: PDB Molecule:putative hth-type transcriptional regulator trmbl2;
PDBTitle: structure of trmbl2, an archaeal chromatin protein, shows a novel mode2 of dna binding.
103c3nrvC_
not modelled 96.3 12
PDB header:transcription regulator
Chain: C: PDB Molecule:putative transcriptional regulator (marr/emrr family);
PDBTitle: crystal structure of marr/emrr family transcriptional regulator from2 acinetobacter sp. adp1
104c2oqgA_
not modelled 96.3 14
PDB header:transcription
Chain: A: PDB Molecule:possible transcriptional regulator, arsr family protein;
PDBTitle: arsr-like transcriptional regulator from rhodococcus sp. rha1
105d2fbia1
not modelled 96.3 13
Fold:DNA/RNA-binding 3-helical bundle
Superfamily:"Winged helix" DNA-binding domain
Family:MarR-like transcriptional regulators
106c3g3zA_
not modelled 96.3 10
PDB header:transcription
Chain: A: PDB Molecule:transcriptional regulator, marr family;
PDBTitle: the structure of nmb1585, a marr family regulator from neisseria2 meningitidis
107d2h6ca1
not modelled 96.2 8
Fold:DNA/RNA-binding 3-helical bundle
Superfamily:"Winged helix" DNA-binding domain
Family:CAP C-terminal domain-like
108c3kp3B_
not modelled 96.2 14
PDB header:transcription regulator/antibiotic
Chain: B: PDB Molecule:transcriptional regulator tcar;
PDBTitle: staphylococcus epidermidis in complex with ampicillin
109d2gaua1
not modelled 96.1 10
Fold:DNA/RNA-binding 3-helical bundle
Superfamily:"Winged helix" DNA-binding domain
Family:CAP C-terminal domain-like
110d1j5ya1
not modelled 96.1 21
Fold:DNA/RNA-binding 3-helical bundle
Superfamily:"Winged helix" DNA-binding domain
Family:Biotin repressor-like
111d1ft9a1
not modelled 96.1 16
Fold:DNA/RNA-binding 3-helical bundle
Superfamily:"Winged helix" DNA-binding domain
Family:CAP C-terminal domain-like
112c1j5yA_
not modelled 96.1 17
PDB header:transcription
Chain: A: PDB Molecule:transcriptional regulator, biotin repressor family;
PDBTitle: crystal structure of transcriptional regulator (tm1602) from2 thermotoga maritima at 2.3 a resolution
113d2bv6a1
not modelled 96.1 8
Fold:DNA/RNA-binding 3-helical bundle
Superfamily:"Winged helix" DNA-binding domain
Family:MarR-like transcriptional regulators
114c3cjnA_
not modelled 96.0 14
PDB header:transcription regulator
Chain: A: PDB Molecule:transcriptional regulator, marr family;
PDBTitle: crystal structure of transcriptional regulator, marr family, from2 silicibacter pomeroyi
115c3oopA_
not modelled 96.0 9
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:lin2960 protein;
PDBTitle: the structure of a protein with unknown function from listeria innocua2 clip11262
116c6c28C_
not modelled 96.0 14
PDB header:dna binding protein
Chain: C: PDB Molecule:transcriptional regulator, marr family;
PDBTitle: transcriptional repressor, cour, bound to p-coumaroyl-coa
117d1sfxa_
not modelled 96.0 9
Fold:DNA/RNA-binding 3-helical bundle
Superfamily:"Winged helix" DNA-binding domain
Family:TrmB-like
118c2fa5B_
not modelled 95.9 11
PDB header:transcription
Chain: B: PDB Molecule:transcriptional regulator marr/emrr family;
PDBTitle: the crystal structure of an unliganded multiple antibiotic-2 resistance repressor (marr) from xanthomonas campestris
119d2oz6a1
not modelled 95.9 8
Fold:DNA/RNA-binding 3-helical bundle
Superfamily:"Winged helix" DNA-binding domain
Family:CAP C-terminal domain-like
120c2nyxB_
not modelled 95.9 11
PDB header:transcription
Chain: B: PDB Molecule:probable transcriptional regulatory protein, rv1404;
PDBTitle: crystal structure of rv1404 from mycobacterium tuberculosis

Binding site prediction 

Due to computational demand, binding site predictions are not run for batch jobs

If you want to predict binding sites, please manually submit your model of choice to 3DLigandSite

Transmembrane helix prediction 

Transmembrane helices have been predicted in your sequence to adopt the topology shown below