Phyre Home Retrieve Phyre Job Id
Emailmdejesus@rockefeller.edu
DescriptionRVBD3063_(cstA)_3427240_3429516
DateThu Aug 8 16:20:24 BST 2019
Unique Job ID0b0c3ceb7b88f4cb
SequenceVAAPTPSNRI ... Download FASTA
Job Typenormal
Job Expiry

Summary 

Top model
Image coloured by rainbow N → C terminus
Model dimensions (Å):X:58.621 Y:61.005 Z:68.216
Model (left) based on template c4wgvC_
Top template information
PDB header:transport protein
Chain: C: PDB Molecule:divalent metal cation transporter mnth;
PDBTitle: crystal structure of staphylococcus capitis divalent metal ion2 transporter (dmt) in complex with nanobody
Confidence and coverage
Confidence: 98.7% Coverage: 51%
386 residues ( 51% of your sequence) have been modelled with 98.7% confidence by the single highest scoring template.
Additional confident templates have been detected (see Domain analysis) which cover other regions of your sequence.
617 residues ( 81%) could be modelled at >90% confidence using multiple-templates.
You may wish to try resubmitting your sequence in "intensive" mode to model more of your sequence.
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Sequence analysis 

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Secondary structure and disorder prediction [Show] 

Domain analysis [Show] 

Detailed template information [Hide] 

 

#
Template Alignment Coverage3D Model Confidence
% i.d. Template Information
1c4wgvC_
98.7 13
PDB header:transport protein
Chain: C: PDB Molecule:divalent metal cation transporter mnth;
PDBTitle: crystal structure of staphylococcus capitis divalent metal ion2 transporter (dmt) in complex with nanobody
2c4wgwA_
98.7 13
PDB header:transport protein
Chain: A: PDB Molecule:divalent metal cation transporter mnth;
PDBTitle: staphylococcus capitis divalent metal ion transporter (dmt) in complex2 with manganese
3c3giaA_
97.5 16
PDB header:transport protein
Chain: A: PDB Molecule:uncharacterized protein mj0609;
PDBTitle: crystal structure of apct transporter
4c2jlnA_
97.4 12
PDB header:membrane protein
Chain: A: PDB Molecule:mhp1;
PDBTitle: structure of mhp1, a nucleobase-cation-symport-1 family2 transporter
5c5oqtA_
97.2 14
PDB header:transport protein
Chain: A: PDB Molecule:amino acid transporter;
PDBTitle: crystal structure of a bacterial cationic amino acid transporter (cat)2 homologue
6c6csfC_
97.0 19
PDB header:membrane protein
Chain: C: PDB Molecule:sodium/alanine symporter agcs;
PDBTitle: crystal structure of sodium/alanine symporter agcs with d-alanine2 bound
7c2xq2A_
96.6 14
PDB header:transport protein
Chain: A: PDB Molecule:sodium/glucose cotransporter;
PDBTitle: structure of the k294a mutant of vsglt
8c5nvaA_
96.4 10
PDB header:membrane protein
Chain: A: PDB Molecule:putative sodium:solute symporter;
PDBTitle: substrate-bound outward-open state of a na+-coupled sialic acid2 symporter reveals a novel na+-site
9c5m87A_
96.1 12
PDB header:transport protein
Chain: A: PDB Molecule:divalent metal cation transporter mnth;
PDBTitle: crystal structure of eremococcus coleocola manganese transporter
10c6irtB_
95.9 12
PDB header:membrane protein
Chain: B: PDB Molecule:large neutral amino acids transporter small subunit 1;
PDBTitle: human lat1-4f2hc complex bound with bch
11c3lrcC_
94.5 14
PDB header:transport protein
Chain: C: PDB Molecule:arginine/agmatine antiporter;
PDBTitle: structure of e. coli adic (p1)
12c6f2wA_
94.2 14
PDB header:transport protein
Chain: A: PDB Molecule:putative amino acid/polyamine transport protein;
PDBTitle: bacterial asc transporter crystal structure in open to in conformation
13c3dh4A_
94.0 13
PDB header:transport protein
Chain: A: PDB Molecule:sodium/glucose cotransporter;
PDBTitle: crystal structure of sodium/sugar symporter with bound galactose from2 vibrio parahaemolyticus
14c6jmqA_
92.4 11
PDB header:membrane protein/immune system
Chain: A: PDB Molecule:large neutral amino acids transporter small subunit 1;
PDBTitle: lat1-cd98hc complex bound to mem-108 fab
15c5kteA_
84.0 16
PDB header:transport protein/immune system
Chain: A: PDB Molecule:divalent metal cation transporter mnth;
PDBTitle: crystal structure of deinococcus radiodurans mnth, an nramp-family2 transition metal transporter
16c4px7A_
57.5 8
PDB header:hydrolase
Chain: A: PDB Molecule:phosphatidylglycerophosphatase;
PDBTitle: crystal structure of lipid phosphatase e. coli pgpb
17c6c08C_
49.6 11
PDB header:membrane protein
Chain: C: PDB Molecule:sodium-coupled neutral amino acid transporter 9;
PDBTitle: zebrafish slc38a9 with arginine bound in the cytosol open state
18c4g29A_
44.4 38
PDB header:protein binding
Chain: A: PDB Molecule:secreted effector protein ssei;
PDBTitle: structure of the catalytic domain of the salmonella virulence factor2 ssei
19c6nplA_
42.8 13
PDB header:membrane protein
Chain: A: PDB Molecule:solute carrier family 12 (sodium/potassium/chloride
PDBTitle: cryo-em structure of nkcc1
20c4djiA_
40.5 12
PDB header:transport protein
Chain: A: PDB Molecule:probable glutamate/gamma-aminobutyrate antiporter;
PDBTitle: structure of glutamate-gaba antiporter gadc
21c5mrwA_
not modelled 39.2 10
PDB header:hydrolase
Chain: A: PDB Molecule:potassium-transporting atpase potassium-binding subunit;
PDBTitle: structure of the kdpfabc complex
22c6btmD_
not modelled 35.5 14
PDB header:membrane protein
Chain: D: PDB Molecule:alternative complex iii subunit d;
PDBTitle: structure of alternative complex iii from flavobacterium johnsoniae2 (wild type)
23c3a8qB_
not modelled 33.4 70
PDB header:signaling protein
Chain: B: PDB Molecule:t-lymphoma invasion and metastasis-inducing
PDBTitle: low-resolution crystal structure of the tiam2 phccex domain
24c6hwhX_
not modelled 33.4 23
PDB header:electron transport
Chain: X: PDB Molecule:cytochrome c oxidase polypeptide 4;
PDBTitle: structure of a functional obligate respiratory supercomplex from2 mycobacterium smegmatis
25c3a8nA_
not modelled 30.3 50
PDB header:signaling protein
Chain: A: PDB Molecule:t-lymphoma invasion and metastasis-inducing
PDBTitle: crystal structure of the tiam1 phccex domain
26c6btmC_
not modelled 30.1 17
PDB header:membrane protein
Chain: C: PDB Molecule:alternative complex iii subunit c;
PDBTitle: structure of alternative complex iii from flavobacterium johnsoniae2 (wild type)
27c2k9pA_
not modelled 29.0 26
PDB header:membrane protein
Chain: A: PDB Molecule:pheromone alpha factor receptor;
PDBTitle: structure of tm1_tm2 in lppg micelles
28c6c08F_
not modelled 25.5 10
PDB header:membrane protein
Chain: F: PDB Molecule:sodium-coupled neutral amino acid transporter 9;
PDBTitle: zebrafish slc38a9 with arginine bound in the cytosol open state
29c2bbjB_
not modelled 24.7 14
PDB header:metal transport/membrane protein
Chain: B: PDB Molecule:divalent cation transport-related protein;
PDBTitle: crystal structure of the cora mg2+ transporter
30c3pl0B_
not modelled 24.6 33
PDB header:biosynthetic protein
Chain: B: PDB Molecule:uncharacterized protein;
PDBTitle: crystal structure of a bsma homolog (mpe_a2762) from methylobium2 petroleophilum pm1 at 1.91 a resolution
31d1rh5a_
not modelled 24.4 15
Fold:Preprotein translocase SecY subunit
Superfamily:Preprotein translocase SecY subunit
Family:Preprotein translocase SecY subunit
32c3hd6A_
not modelled 23.8 23
PDB header:membrane protein, transport protein
Chain: A: PDB Molecule:ammonium transporter rh type c;
PDBTitle: crystal structure of the human rhesus glycoprotein rhcg
33c4o65A_
not modelled 23.7 47
PDB header:oxidoreductase
Chain: A: PDB Molecule:putative archaeal ammonia monooxygenase subunit b;
PDBTitle: crystal structure of the cupredoxin domain of amob from nitrosocaldus2 yellowstonii
34c3zy6A_
not modelled 22.7 27
PDB header:transferase
Chain: A: PDB Molecule:putative gdp-fucose protein o-fucosyltransferase 1;
PDBTitle: crystal structure of pofut1 in complex with gdp-fucose (crystal-form-2 ii)
35c5nikK_
not modelled 21.1 19
PDB header:transport protein
Chain: K: PDB Molecule:macrolide export atp-binding/permease protein macb;
PDBTitle: structure of the macab-tolc abc-type tripartite multidrug efflux pump
36c2wwbA_
not modelled 20.4 16
PDB header:ribosome
Chain: A: PDB Molecule:protein transport protein sec61 subunit alpha isoform 1;
PDBTitle: cryo-em structure of the mammalian sec61 complex bound to the actively2 translating wheat germ 80s ribosome
37d1rp4a_
not modelled 19.6 30
Fold:ERO1-like
Superfamily:ERO1-like
Family:ERO1-like
38c2wwaA_
not modelled 19.4 19
PDB header:ribosome
Chain: A: PDB Molecule:sec sixty-one protein homolog;
PDBTitle: cryo-em structure of idle yeast ssh1 complex bound to the yeast 80s2 ribosome
39c6n3qA_
not modelled 18.5 15
PDB header:transport protein
Chain: A: PDB Molecule:protein transport protein sec61;
PDBTitle: cryo-em structure of the yeast sec complex
40c5jnoA_
not modelled 18.5 12
PDB header:cell cycle
Chain: A: PDB Molecule:ben domain-containing protein 3;
PDBTitle: crystal structure of the bd1-ntpr complex from bend3 and pich
41c3b9yA_
not modelled 18.4 31
PDB header:transport protein
Chain: A: PDB Molecule:ammonium transporter family rh-like protein;
PDBTitle: crystal structure of the nitrosomonas europaea rh protein
42c5ws4A_
not modelled 18.1 21
PDB header:membrane protein
Chain: A: PDB Molecule:macrolide export atp-binding/permease protein macb;
PDBTitle: crystal structure of tripartite-type abc transporter macb from2 acinetobacter baumannii
43c4p6vB_
not modelled 18.0 16
PDB header:oxidoreductase
Chain: B: PDB Molecule:na(+)-translocating nadh-quinone reductase subunit b;
PDBTitle: crystal structure of the na+-translocating nadh: ubiquinone2 oxidoreductase from vibrio cholerae
44c2jo1A_
not modelled 17.8 17
PDB header:hydrolase regulator
Chain: A: PDB Molecule:phospholemman;
PDBTitle: structure of the na,k-atpase regulatory protein fxyd1 in2 micelles
45c4atbB_
not modelled 16.9 21
PDB header:immune system
Chain: B: PDB Molecule:interleukin enhancer-binding factor 3;
PDBTitle: crystal structure of the nf90-nf45 dimerisation domain2 complex with ctp
46c5o4uK_
not modelled 16.8 24
PDB header:cell adhesion
Chain: K: PDB Molecule:flagellin;
PDBTitle: the flagellin of pyrococcus furiosus
47d2bfdb2
not modelled 16.1 4
Fold:TK C-terminal domain-like
Superfamily:TK C-terminal domain-like
Family:Branched-chain alpha-keto acid dehydrogenase beta-subunit, C-terminal-domain
48c4p6vC_
not modelled 16.1 11
PDB header:oxidoreductase
Chain: C: PDB Molecule:na(+)-translocating nadh-quinone reductase subunit c;
PDBTitle: crystal structure of the na+-translocating nadh: ubiquinone2 oxidoreductase from vibrio cholerae
49c5z1lL_
not modelled 15.2 24
PDB header:protein fibril
Chain: L: PDB Molecule:flagellin;
PDBTitle: cryo-em structure of methanoccus maripaludis archaellum
50c2l8sA_
not modelled 14.0 23
PDB header:cell adhesion
Chain: A: PDB Molecule:integrin alpha-1;
PDBTitle: solution nmr structure of transmembrane and cytosolic regions of2 integrin alpha1 in detergent micelles
51d1qs0b2
not modelled 13.6 19
Fold:TK C-terminal domain-like
Superfamily:TK C-terminal domain-like
Family:Branched-chain alpha-keto acid dehydrogenase beta-subunit, C-terminal-domain
52d1s6la1
not modelled 13.5 38
Fold:DNA/RNA-binding 3-helical bundle
Superfamily:"Winged helix" DNA-binding domain
Family:MerB N-terminal domain-like
53c5xu1M_
not modelled 13.4 23
PDB header:transport protein
Chain: M: PDB Molecule:abc transporter permeae;
PDBTitle: structure of a non-canonical abc transporter from streptococcus2 pneumoniae r6
54d1oqja_
not modelled 13.4 27
Fold:SAND domain-like
Superfamily:SAND domain-like
Family:SAND domain
55c2vy2A_
not modelled 13.3 21
PDB header:transcription
Chain: A: PDB Molecule:protein leafy;
PDBTitle: structure of leafy transcription factor from arabidopsis2 thaliana in complex with dna from ag-i promoter
56c5w6yB_
not modelled 13.3 8
PDB header:biosynthetic protein,isomerase
Chain: B: PDB Molecule:chorismate mutase;
PDBTitle: physcomitrella patens chorismate mutase
57c1yewI_
not modelled 13.2 40
PDB header:oxidoreductase, membrane protein
Chain: I: PDB Molecule:particulate methane monooxygenase, b subunit;
PDBTitle: crystal structure of particulate methane monooxygenase
58d1fasa_
not modelled 13.1 40
Fold:Snake toxin-like
Superfamily:Snake toxin-like
Family:Snake venom toxins
59d2fug61
not modelled 13.1 36
Fold:HydA/Nqo6-like
Superfamily:HydA/Nqo6-like
Family:Nq06-like
60d1h5pa_
not modelled 13.0 27
Fold:SAND domain-like
Superfamily:SAND domain-like
Family:SAND domain
61c3eamB_
not modelled 13.0 17
PDB header:membrane protein, transport protein
Chain: B: PDB Molecule:glr4197 protein;
PDBTitle: an open-pore structure of a bacterial pentameric ligand-2 gated ion channel
62c3a0hJ_
not modelled 12.9 36
PDB header:electron transport
Chain: J: PDB Molecule:photosystem ii reaction center protein j;
PDBTitle: crystal structure of i-substituted photosystem ii complex
63d2axtj1
not modelled 12.9 36
Fold:Single transmembrane helix
Superfamily:Photosystem II reaction center protein J, PsbJ
Family:PsbJ-like
64d1afra_
not modelled 12.8 30
Fold:Ferritin-like
Superfamily:Ferritin-like
Family:Ribonucleotide reductase-like
65c5tfyJ_
not modelled 12.7 24
PDB header:cell adhesion
Chain: J: PDB Molecule:flagellin;
PDBTitle: the archaeal flagellum of methanospirillum hungatei strain jf1.
66c4wepA_
not modelled 12.6 17
PDB header:transport protein
Chain: A: PDB Molecule:putative osmoprotectant uptake system substrate-binding
PDBTitle: apo yehz from escerichia coli
67c3rfrI_
not modelled 12.5 40
PDB header:oxidoreductase
Chain: I: PDB Molecule:pmob;
PDBTitle: crystal structure of particulate methane monooxygenase (pmmo) from2 methylocystis sp. strain m
68d1ufna_
not modelled 12.4 20
Fold:SAND domain-like
Superfamily:SAND domain-like
Family:SAND domain
69c3iymA_
not modelled 12.4 23
PDB header:virus
Chain: A: PDB Molecule:capsid protein;
PDBTitle: backbone trace of the capsid protein dimer of a fungal partitivirus2 from electron cryomicroscopy and homology modeling
70c2m0qA_
not modelled 12.4 12
PDB header:membrane protein
Chain: A: PDB Molecule:potassium voltage-gated channel subfamily e member 2;
PDBTitle: solution nmr analysis of intact kcne2 in detergent micelles2 demonstrate a straight transmembrane helix
71d1v54c_
not modelled 12.3 14
Fold:Cytochrome c oxidase subunit III-like
Superfamily:Cytochrome c oxidase subunit III-like
Family:Cytochrome c oxidase subunit III-like
72d2axtc1
not modelled 12.0 18
Fold:Photosystem II antenna protein-like
Superfamily:Photosystem II antenna protein-like
Family:Photosystem II antenna protein-like
73c2axtc_
not modelled 12.0 18
PDB header:electron transport
Chain: C: PDB Molecule:photosystem ii cp43 protein;
PDBTitle: crystal structure of photosystem ii from thermosynechococcus elongatus
74c5lj7B_
not modelled 11.8 19
PDB header:transport protein
Chain: B: PDB Molecule:macrolide export atp-binding/permease protein macb;
PDBTitle: structure of aggregatibacter actinomycetemcomitans macb bound to atp2 (p21)
75c2ktlA_
not modelled 11.3 20
PDB header:ligase
Chain: A: PDB Molecule:tyrosyl-trna synthetase;
PDBTitle: structure of c-terminal domain from mttyrrs of a. nidulans
76d1ik6a2
not modelled 11.1 12
Fold:TK C-terminal domain-like
Superfamily:TK C-terminal domain-like
Family:Branched-chain alpha-keto acid dehydrogenase beta-subunit, C-terminal-domain
77c3jadC_
not modelled 11.0 17
PDB header:signaling protein/antagonist
Chain: C: PDB Molecule:glycine receptor subunit alphaz1;
PDBTitle: structure of alpha-1 glycine receptor by single particle electron2 cryo-microscopy, strychnine-bound state
78c3chxE_
not modelled 10.9 40
PDB header:membrane protein
Chain: E: PDB Molecule:pmob;
PDBTitle: crystal structure of methylosinus trichosporium ob3b particulate2 methane monooxygenase (pmmo)
79c2kncA_
not modelled 10.8 55
PDB header:cell adhesion
Chain: A: PDB Molecule:integrin alpha-iib;
PDBTitle: platelet integrin alfaiib-beta3 transmembrane-cytoplasmic2 heterocomplex
80c3ahrA_
not modelled 10.8 33
PDB header:oxidoreductase
Chain: A: PDB Molecule:ero1-like protein alpha;
PDBTitle: inactive human ero1
81c3v69A_
not modelled 10.7 8
PDB header:protein binding
Chain: A: PDB Molecule:protein filia;
PDBTitle: filia-n crystal structure
82c3rgbA_
not modelled 10.4 40
PDB header:oxidoreductase
Chain: A: PDB Molecule:methane monooxygenase subunit b2;
PDBTitle: crystal structure of particulate methane monooxygenase from2 methylococcus capsulatus (bath)
83c4n7wA_
not modelled 10.2 11
PDB header:transport protein
Chain: A: PDB Molecule:transporter, sodium/bile acid symporter family;
PDBTitle: crystal structure of the sodium bile acid symporter from yersinia2 frederiksenii
84c2ndjA_
not modelled 10.1 21
PDB header:membrane protein
Chain: A: PDB Molecule:potassium voltage-gated channel subfamily e member 3;
PDBTitle: structural basis for kcne3 and estrogen modulation of the kcnq12 channel
85d5csma_
not modelled 9.9 8
Fold:Chorismate mutase II
Superfamily:Chorismate mutase II
Family:Allosteric chorismate mutase
86d1nekd_
not modelled 9.7 20
Fold:Heme-binding four-helical bundle
Superfamily:Fumarate reductase respiratory complex transmembrane subunits
Family:Succinate dehydrogenase/Fumarate reductase transmembrane subunits (SdhC/FrdC and SdhD/FrdD)
87d2ozlb2
not modelled 9.7 14
Fold:TK C-terminal domain-like
Superfamily:TK C-terminal domain-like
Family:Branched-chain alpha-keto acid dehydrogenase beta-subunit, C-terminal-domain
88c6hwhb_
not modelled 9.7 12
PDB header:electron transport
Chain: B: PDB Molecule:ubiquinol-cytochrome c reductase iron-sulfur subunit;
PDBTitle: structure of a functional obligate respiratory supercomplex from2 mycobacterium smegmatis
89c5mdxX_
not modelled 9.6 20
PDB header:photosynthesis
Chain: X: PDB Molecule:photosystem ii reaction center protein x;
PDBTitle: cryo-em structure of the psii supercomplex from arabidopsis thaliana
90c5mdxx_
not modelled 9.6 20
PDB header:photosynthesis
Chain: X: PDB Molecule:photosystem ii reaction center protein x;
PDBTitle: cryo-em structure of the psii supercomplex from arabidopsis thaliana
91c4walA_
not modelled 9.5 21
PDB header:protein binding/rna
Chain: A: PDB Molecule:branchpoint-bridging protein;
PDBTitle: crystal structure of selenomethionine msl5 protein in complex with rna2 at 2.2 a
92c6h3pB_
not modelled 9.4 4
PDB header:plant protein
Chain: B: PDB Molecule:chorismate mutase;
PDBTitle: crystal structure of the cytoplasmic chorismate mutase from zea mays
93c4kmfA_
not modelled 9.4 29
PDB header:transferase/dna
Chain: A: PDB Molecule:interferon-inducible and double-stranded-dependent eif-
PDBTitle: crystal structure of zalpha domain from carassius auratus pkz in2 complex with z-dna
94c2lnhA_
not modelled 9.2 20
PDB header:signaling protein/protein binding
Chain: A: PDB Molecule:neural wiskott-aldrich syndrome protein;
PDBTitle: enterohaemorrhagic e. coli (ehec) exploits a tryptophan switch to2 hijack host f-actin assembly
95c4jkvA_
not modelled 9.2 9
PDB header:membrane protein
Chain: A: PDB Molecule:soluble cytochrome b562, smoothened homolog;
PDBTitle: structure of the human smoothened 7tm receptor in complex with an2 antitumor agent
96c4ppuA_
not modelled 9.1 12
PDB header:isomerase
Chain: A: PDB Molecule:chorismate mutase 1, chloroplastic;
PDBTitle: crystal structure of atcm1 with tyrosine bound in allosteric site
97c2k21A_
not modelled 9.0 15
PDB header:membrane protein
Chain: A: PDB Molecule:potassium voltage-gated channel subfamily e
PDBTitle: nmr structure of human kcne1 in lmpg micelles at ph 6.0 and2 40 degree c
98d2yrka1
not modelled 8.9 27
Fold:beta-beta-alpha zinc fingers
Superfamily:beta-beta-alpha zinc fingers
Family:HkH motif-containing C2H2 finger
99c5y9pA_
not modelled 8.8 67
PDB header:hydrolase
Chain: A: PDB Molecule:ribonuclease hii;
PDBTitle: staphylococcus aureus rnase hii

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Transmembrane helix prediction 

Transmembrane helices have been predicted in your sequence to adopt the topology shown below