Phyre Home Retrieve Phyre Job Id
Emailmdejesus@rockefeller.edu
DescriptionRVBD3065_(mmr)_3430384_3430707
DateThu Aug 8 16:20:24 BST 2019
Unique Job ID720ad05c4f1d4e41
SequenceLIYLYLLCAI ... Download FASTA
Job Typenormal
Job Expiry

Summary 

Top model
Image coloured by rainbow N → C terminus
Model dimensions (Å):X:49.388 Y:32.047 Z:46.641
Model (left) based on template d1s7ba_
Top template information
Fold:Multidrug resistance efflux transporter EmrE
Superfamily:Multidrug resistance efflux transporter EmrE
Family:Multidrug resistance efflux transporter EmrE
Confidence and coverage
Confidence:100.0% Coverage: 94%
101 residues ( 94% of your sequence) have been modelled with 100.0% confidence by the single highest scoring template.
3D viewing
Interactive 3D view in JSmol
For other options to view your downloaded structure offline see the FAQ

Sequence analysis 

Download FASTA version

Secondary structure and disorder prediction [Show] 

Domain analysis [Show] 

Detailed template information [Hide] 

 

#
Template Alignment Coverage3D Model Confidence
% i.d. Template Information
1d1s7ba_



100.0 43
Fold:Multidrug resistance efflux transporter EmrE
Superfamily:Multidrug resistance efflux transporter EmrE
Family:Multidrug resistance efflux transporter EmrE
2c2i68B_



99.8 45
PDB header:transport protein
Chain: B: PDB Molecule:protein emre;
PDBTitle: cryo-em based theoretical model structure of transmembrane2 domain of the multidrug-resistance antiporter from e. coli3 emre
3c6oh2A_



98.1 10
PDB header:transport protein
Chain: A: PDB Molecule:cmp-sialic acid transporter;
PDBTitle: x-ray crystal structure of the mouse cmp-sialic acid transporter in2 complex with cmp, by lipidic cubic phase
4c5i20E_



98.0 20
PDB header:membrane protein
Chain: E: PDB Molecule:uncharacterized protein;
PDBTitle: crystal structure of protein
5c6i1rA_



97.9 5
PDB header:membrane protein
Chain: A: PDB Molecule:cmp-sialic acid transporter 1;
PDBTitle: crystal structure of cmp bound cst in an outward facing conformation
6c5y79A_



97.8 16
PDB header:transport protein
Chain: A: PDB Molecule:putative hexose phosphate translocator;
PDBTitle: crystal structure of the triose-phosphate/phosphate translocator in2 complex with 3-phosphoglycerate
7c5ogeE_



97.6 12
PDB header:membrane protein
Chain: E: PDB Molecule:gdp-mannose transporter 1;
PDBTitle: crystal structure of a nucleotide sugar transporter
8c5i20C_



97.5 15
PDB header:membrane protein
Chain: C: PDB Molecule:uncharacterized protein;
PDBTitle: crystal structure of protein
9c4oo9A_



18.9 19
PDB header:membrane protein
Chain: A: PDB Molecule:metabotropic glutamate receptor 5, lysozyme, metabotropic
PDBTitle: structure of the human class c gpcr metabotropic glutamate receptor 52 transmembrane domain in complex with the negative allosteric3 modulator mavoglurant
10c3mp7B_



16.2 29
PDB header:protein transport
Chain: B: PDB Molecule:preprotein translocase subunit sece;
PDBTitle: lateral opening of a translocon upon entry of protein suggests the2 mechanism of insertion into membranes
11c2lp1A_



9.0 33
PDB header:membrane protein
Chain: A: PDB Molecule:c99;
PDBTitle: the solution nmr structure of the transmembrane c-terminal domain of2 the amyloid precursor protein (c99)
12c5xnmj_



8.7 36
PDB header:membrane protein
Chain: J: PDB Molecule:photosystem ii reaction center protein j;
PDBTitle: structure of unstacked c2s2m2-type psii-lhcii supercomplex from pisum2 sativum
13c5azcA_



7.9 19
PDB header:transferase
Chain: A: PDB Molecule:prolipoprotein diacylglyceryl transferase;
PDBTitle: crystal structure of escherichia coli lgt in complex with2 phosphatidylglycerol
14c3jcuj_



7.7 43
PDB header:membrane protein
Chain: J: PDB Molecule:photosystem ii reaction center protein j;
PDBTitle: cryo-em structure of spinach psii-lhcii supercomplex at 3.2 angstrom2 resolution
15c6e8wC_



6.8 25
PDB header:viral protein
Chain: C: PDB Molecule:envelope glycoprotein gp160;
PDBTitle: mper-tm domain of hiv-1 envelope glycoprotein (env)
16c5dirB_



6.7 15
PDB header:hydrolase
Chain: B: PDB Molecule:lipoprotein signal peptidase;
PDBTitle: membrane protein at 2.8 angstroms
17c5doqC_



6.5 17
PDB header:oxidoreductase
Chain: C: PDB Molecule:putative membrane protein;
PDBTitle: the structure of bd oxidase from geobacillus thermodenitrificans
18c5ir6C_



6.5 17
PDB header:oxidoreductase
Chain: C: PDB Molecule:putative membrane protein;
PDBTitle: the structure of bd oxidase from geobacillus thermodenitrificans
19c6m97A_



6.3 17
PDB header:transport protein
Chain: A: PDB Molecule:chimera protein of high affinity copper uptake protein 1
PDBTitle: crystal structure of the high-affinity copper transporter ctr1
20c3a0hJ_



5.5 43
PDB header:electron transport
Chain: J: PDB Molecule:photosystem ii reaction center protein j;
PDBTitle: crystal structure of i-substituted photosystem ii complex
21d2axtj1



not modelled 5.5 43
Fold:Single transmembrane helix
Superfamily:Photosystem II reaction center protein J, PsbJ
Family:PsbJ-like

Binding site prediction 

Due to computational demand, binding site predictions are not run for batch jobs

If you want to predict binding sites, please manually submit your model of choice to 3DLigandSite

Transmembrane helix prediction 

Transmembrane helices have been predicted in your sequence to adopt the topology shown below