Phyre Home Retrieve Phyre Job Id
Emailmdejesus@rockefeller.edu
DescriptionRVBD3067_(-)_3431425_3431835
DateThu Aug 8 16:20:24 BST 2019
Unique Job IDdcac68591e33ea35
SequenceLLTVGVGIGA ... Download FASTA
Job Typenormal
Job Expiry

Summary 

Top model
Image coloured by rainbow N → C terminus
Model dimensions (Å):X:23.844 Y:33.692 Z:25.471
Model (left) based on template c5k9xA_
Top template information
PDB header:lyase
Chain: A: PDB Molecule:tryptophan synthase alpha chain;
PDBTitle: crystal structure of tryptophan synthase alpha chain from legionella2 pneumophila subsp. pneumophila
Confidence and coverage
Confidence: 61.3% Coverage: 38%
52 residues ( 38% of your sequence) have been modelled with 61.3% confidence by the single highest scoring template.
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Sequence analysis 

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Secondary structure and disorder prediction [Show] 

Domain analysis [Show] 

Detailed template information [Hide] 

 

#
Template Alignment Coverage3D Model Confidence
% i.d. Template Information
1c5k9xA_
61.3 17
PDB header:lyase
Chain: A: PDB Molecule:tryptophan synthase alpha chain;
PDBTitle: crystal structure of tryptophan synthase alpha chain from legionella2 pneumophila subsp. pneumophila
2c2ekcA_
58.9 19
PDB header:lyase
Chain: A: PDB Molecule:tryptophan synthase alpha chain;
PDBTitle: structural study of project id aq_1548 from aquifex aeolicus vf5
3c3vndD_
34.8 21
PDB header:lyase
Chain: D: PDB Molecule:tryptophan synthase alpha chain;
PDBTitle: crystal structure of tryptophan synthase alpha-subunit from the2 psychrophile shewanella frigidimarina k14-2
4c5tchG_
31.6 23
PDB header:lyase
Chain: G: PDB Molecule:tryptophan synthase alpha chain;
PDBTitle: crystal structure of tryptophan synthase from m. tuberculosis -2 ligand-free form, trpa-g66v mutant
5c5kzmA_
30.7 23
PDB header:lyase
Chain: A: PDB Molecule:tryptophan synthase alpha chain;
PDBTitle: crystal structure of tryptophan synthase alpha-beta chain complex from2 francisella tularensis
6c3navB_
26.9 21
PDB header:lyase
Chain: B: PDB Molecule:tryptophan synthase alpha chain;
PDBTitle: crystal structure of an alpha subunit of tryptophan synthase from2 vibrio cholerae o1 biovar el tor str. n16961
7c5ey5A_
25.9 29
PDB header:lyase
Chain: A: PDB Molecule:lbcats-a;
PDBTitle: lbcats
8c6c3rB_
21.9 12
PDB header:viral protein
Chain: B: PDB Molecule:cricket paralysis virus 1a protein;
PDBTitle: cricket paralysis virus rnai suppressor protein crpv-1a
9d2csua3
20.6 11
Fold:Flavodoxin-like
Superfamily:Succinyl-CoA synthetase domains
Family:Succinyl-CoA synthetase domains
10c3thaB_
18.2 27
PDB header:lyase
Chain: B: PDB Molecule:tryptophan synthase alpha chain;
PDBTitle: tryptophan synthase subunit alpha from campylobacter jejuni.
11c5kinC_
16.6 32
PDB header:lyase
Chain: C: PDB Molecule:tryptophan synthase alpha chain;
PDBTitle: crystal structure of tryptophan synthase alpha beta complex from2 streptococcus pneumoniae
12c2hzdA_
15.3 33
PDB header:gene regulation
Chain: A: PDB Molecule:transcriptional enhancer factor tef-1;
PDBTitle: nmr structure of the dna-binding tea domain and insights2 into tef-1 function
13d1mkea1
14.9 30
Fold:PH domain-like barrel
Superfamily:PH domain-like
Family:Enabled/VASP homology 1 domain (EVH1 domain)
14c5gzbA_
14.2 33
PDB header:transcription/dna
Chain: A: PDB Molecule:transcriptional enhancer factor tef-3;
PDBTitle: crystal structure of transcription factor tead4 in complex with m-cat2 dna
15d1qopa_
11.9 29
Fold:TIM beta/alpha-barrel
Superfamily:Ribulose-phoshate binding barrel
Family:Tryptophan biosynthesis enzymes
16c5uqdA_
11.7 24
PDB header:oxidoreductase
Chain: A: PDB Molecule:dumpy: shorter than wild-type;
PDBTitle: dpy-21 in complex with fe(ii) and alpha-ketoglutarate
17c2mulA_
11.4 45
PDB header:protein binding
Chain: A: PDB Molecule:e3 ubiquitin-protein ligase huwe1;
PDBTitle: solution structure of the ubm1 domain of human huwe1/arf-bp1
18c4furD_
10.9 20
PDB header:hydrolase
Chain: D: PDB Molecule:urease subunit gamma 2;
PDBTitle: crystal structure of urease subunit gamma 2 from brucella melitensis2 biovar abortus 2308
19c2fvhB_
10.1 17
PDB header:hydrolase
Chain: B: PDB Molecule:urease gamma subunit;
PDBTitle: crystal structure of rv1848, a urease gamma subunit urea (urea2 amidohydrolase), from mycobacterium tuberculosis
20c2hl7A_
9.9 19
PDB header:oxidoreductase
Chain: A: PDB Molecule:cytochrome c-type biogenesis protein ccmh;
PDBTitle: crystal structure of the periplasmic domain of ccmh from pseudomonas2 aeruginosa
21c4rl6A_
not modelled 9.0 21
PDB header:oxidoreductase
Chain: A: PDB Molecule:saccharopine dehydrogenase;
PDBTitle: crystal structure of the q04l03_strp2 protein from streptococcus2 pneumoniae. northeast structural genomics consortium target spr105
22c3dmyA_
not modelled 9.0 23
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:protein fdra;
PDBTitle: crystal structure of a predicated acyl-coa synthetase from e.coli
23d4ubpa_
not modelled 8.9 20
Fold:Urease, gamma-subunit
Superfamily:Urease, gamma-subunit
Family:Urease, gamma-subunit
24c4z42A_
not modelled 8.9 15
PDB header:hydrolase
Chain: A: PDB Molecule:urease subunit gamma;
PDBTitle: crystal structure of urease from yersinia enterocolitica
25d1ejxa_
not modelled 8.7 13
Fold:Urease, gamma-subunit
Superfamily:Urease, gamma-subunit
Family:Urease, gamma-subunit
26c2kw0A_
not modelled 8.6 17
PDB header:oxidoreductase
Chain: A: PDB Molecule:ccmh protein;
PDBTitle: solution structure of n-terminal domain of ccmh from escherichia.coli
27d3ctda1
not modelled 8.5 12
Fold:post-AAA+ oligomerization domain-like
Superfamily:post-AAA+ oligomerization domain-like
Family:MgsA/YrvN C-terminal domain-like
28d1geqa_
not modelled 8.4 22
Fold:TIM beta/alpha-barrel
Superfamily:Ribulose-phoshate binding barrel
Family:Tryptophan biosynthesis enzymes
29d1eucb1
not modelled 7.9 19
Fold:Flavodoxin-like
Superfamily:Succinyl-CoA synthetase domains
Family:Succinyl-CoA synthetase domains
30c4krrA_
not modelled 7.7 21
PDB header:signaling protein
Chain: A: PDB Molecule:wnt inhibitor of dorsal protein;
PDBTitle: crystal structure of drosophila wntd n-terminal domain-linker2 (residues 31-240)
31c3pvsA_
not modelled 7.7 16
PDB header:recombination
Chain: A: PDB Molecule:replication-associated recombination protein a;
PDBTitle: structure and biochemical activities of escherichia coli mgsa
32c5cm2M_
not modelled 7.6 23
PDB header:transferase
Chain: M: PDB Molecule:trna methyltransferase activator subunit;
PDBTitle: insights into molecular plasticity in protein complexes from trm9-2 trm112 trna modifying enzyme crystal structure
33c4v19S_
not modelled 7.4 12
PDB header:ribosome
Chain: S: PDB Molecule:mitoribosomal protein ul18m, mrpl18;
PDBTitle: structure of the large subunit of the mammalian mitoribosome, part 12 of 2
34c2lweA_
not modelled 7.3 13
PDB header:signaling protein
Chain: A: PDB Molecule:probable atp-dependent rna helicase ddx58;
PDBTitle: solution structure of mutant (t170e) second card of human rig-i
35c1apzB_
not modelled 7.2 8
PDB header:complex (hydrolase/peptide)
Chain: B: PDB Molecule:aspartylglucosaminidase;
PDBTitle: human aspartylglucosaminidase complex with reaction product
36c3ss4C_
not modelled 7.2 25
PDB header:hydrolase
Chain: C: PDB Molecule:glutaminase c;
PDBTitle: crystal structure of mouse glutaminase c, phosphate-bound form
37d1xoda1
not modelled 7.2 18
Fold:PH domain-like barrel
Superfamily:PH domain-like
Family:Enabled/VASP homology 1 domain (EVH1 domain)
38c4inaA_
not modelled 6.9 21
PDB header:oxidoreductase
Chain: A: PDB Molecule:saccharopine dehydrogenase;
PDBTitle: crystal structure of the q7mss8_wolsu protein from wolinella2 succinogenes. northeast structural genomics consortium target wsr35
39c2mqkA_
not modelled 6.8 7
PDB header:hydrolase
Chain: A: PDB Molecule:atp-dependent target dna activator b;
PDBTitle: solution structure of n terminal domain of the mub aaa+ atpase
40c3v53E_
not modelled 6.8 13
PDB header:rna binding protein
Chain: E: PDB Molecule:rna-binding protein 25;
PDBTitle: crystal structure of human rbm25
41c2gacD_
not modelled 6.8 20
PDB header:hydrolase
Chain: D: PDB Molecule:glycosylasparaginase;
PDBTitle: t152c mutant glycosylasparaginase from flavobacterium2 meningosepticum
42c6ahyD_
not modelled 6.6 24
PDB header:signaling protein
Chain: D: PDB Molecule:proto-oncogene wnt-3;
PDBTitle: wnt signaling complex
43c6fnnB_
not modelled 6.6 50
PDB header:hydrolase
Chain: B: PDB Molecule:26s proteasome regulatory subunit n11-like protein;
PDBTitle: caldiarchaeum subterraneum ubiquitin:rpn11-homolog complex
44c5us3A_
not modelled 6.4 75
PDB header:de novo protein
Chain: A: PDB Molecule:heterogeneous-backbone variant of the sp1-3 zinc finger: n-
PDBTitle: heterogeneous-backbone foldamer mimic of the sp1-3 zinc finger
45c4f0aB_
not modelled 6.3 18
PDB header:signaling protein
Chain: B: PDB Molecule:protein wnt-8;
PDBTitle: crystal structure of xwnt8 in complex with the cysteine-rich domain of2 frizzled 8
46c1zbuB_
not modelled 6.0 18
PDB header:hydrolase
Chain: B: PDB Molecule:3'-5' exonuclease eri1;
PDBTitle: crystal structure of full-length 3'-exonuclease
47c4naeA_
not modelled 6.0 16
PDB header:transferase
Chain: A: PDB Molecule:heptaprenylglyceryl phosphate synthase;
PDBTitle: pcrb from geobacillus kaustophilus, with bound g1p
48c3ctdB_
not modelled 6.0 12
PDB header:structural genomics, unknown function
Chain: B: PDB Molecule:putative atpase, aaa family;
PDBTitle: crystal structure of a putative aaa family atpase from prochlorococcus2 marinus subsp. pastoris
49d1e9ya2
not modelled 5.9 13
Fold:Urease, gamma-subunit
Superfamily:Urease, gamma-subunit
Family:Urease, gamma-subunit
50d1ujpa_
not modelled 5.8 21
Fold:TIM beta/alpha-barrel
Superfamily:Ribulose-phoshate binding barrel
Family:Tryptophan biosynthesis enzymes
51c3g2bA_
not modelled 5.7 14
PDB header:biosynthetic protein
Chain: A: PDB Molecule:coenzyme pqq synthesis protein d;
PDBTitle: crystal structure of pqqd from xanthomonas campestris
52c4nn7A_
not modelled 5.6 13
PDB header:cytokine/cytokine receptor
Chain: A: PDB Molecule:thymic stromal lymphopoietin;
PDBTitle: cytokine receptor complex - crystal form 2
53c2v75A_
not modelled 5.6 17
PDB header:nuclear protein
Chain: A: PDB Molecule:nuclear polyadenylated rna-binding protein nab2;
PDBTitle: n-terminal domain of nab2
54d1w2za3
not modelled 5.6 17
Fold:Cystatin-like
Superfamily:Amine oxidase N-terminal region
Family:Amine oxidase N-terminal region
55c3h7hA_
not modelled 5.5 24
PDB header:transcription
Chain: A: PDB Molecule:transcription elongation factor spt4;
PDBTitle: crystal structure of the human transcription elongation factor dsif,2 hspt4/hspt5 (176-273)
56d1jqga2
not modelled 5.5 16
Fold:Ferredoxin-like
Superfamily:Protease propeptides/inhibitors
Family:Pancreatic carboxypeptidase, activation domain
57c5j12A_
not modelled 5.4 13
PDB header:signaling protein
Chain: A: PDB Molecule:thymic stromal lymphopoietin;
PDBTitle: structure of human tslp:tslpr in complex with mouse il-7ralpha
58d1pbaa_
not modelled 5.2 5
Fold:Ferredoxin-like
Superfamily:Protease propeptides/inhibitors
Family:Pancreatic carboxypeptidase, activation domain
59c2jd3B_
not modelled 5.1 18
PDB header:dna binding protein
Chain: B: PDB Molecule:stbb protein;
PDBTitle: parr from plasmid pb171

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