Phyre Home Retrieve Phyre Job Id
Emailmdejesus@rockefeller.edu
DescriptionRVBD3072c_(-)_3435795_3436319
DateThu Aug 8 16:20:24 BST 2019
Unique Job ID4fbb415e953a4ae8
SequenceLACVRRSCDV ... Download FASTA
Job Typenormal
Job Expiry

Summary 

Top model
Image coloured by rainbow N → C terminus
Model dimensions (Å):X:42.125 Y:46.187 Z:29.373
Model (left) based on template c3sdoB_
Top template information
PDB header:oxidoreductase
Chain: B: PDB Molecule:nitrilotriacetate monooxygenase;
PDBTitle: structure of a nitrilotriacetate monooxygenase from burkholderia2 pseudomallei
Confidence and coverage
Confidence: 99.9% Coverage: 69%
120 residues ( 69% of your sequence) have been modelled with 99.9% confidence by the single highest scoring template.
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Sequence analysis 

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Detailed template information [Hide] 

 

#
Template Alignment Coverage3D Model Confidence
% i.d. Template Information
1c3sdoB_



99.9 18
PDB header:oxidoreductase
Chain: B: PDB Molecule:nitrilotriacetate monooxygenase;
PDBTitle: structure of a nitrilotriacetate monooxygenase from burkholderia2 pseudomallei
2c1tvlA_



99.9 15
PDB header:oxidoreductase
Chain: A: PDB Molecule:protein ytnj;
PDBTitle: structure of ytnj from bacillus subtilis
3d1tvla_



99.9 15
Fold:TIM beta/alpha-barrel
Superfamily:Bacterial luciferase-like
Family:Ssud-like monoxygenases
4c5tlcA_



99.9 20
PDB header:oxidoreductase
Chain: A: PDB Molecule:dibenzothiophene desulfurization enzyme a;
PDBTitle: crystal structure of bdsa from bacillus subtilis wu-s2b
5c2b81D_



99.9 24
PDB header:oxidoreductase
Chain: D: PDB Molecule:luciferase-like monooxygenase;
PDBTitle: crystal structure of the luciferase-like monooxygenase from bacillus2 cereus
6c3raoB_



99.9 29
PDB header:structural genomics, unknown function
Chain: B: PDB Molecule:putative luciferase-like monooxygenase;
PDBTitle: crystal structure of the luciferase-like monooxygenase from bacillus2 cereus atcc 10987.
7c5w4zA_



99.9 19
PDB header:flavoprotein
Chain: A: PDB Molecule:riboflavin lyase;
PDBTitle: crystal structure of riboflavin lyase (rcae) with modified fmn and2 substrate riboflavin
8c3b9nB_



99.9 20
PDB header:oxidoreductase
Chain: B: PDB Molecule:alkane monoxygenase;
PDBTitle: crystal structure of long-chain alkane monooxygenase (lada)
9d1lucb_



99.9 20
Fold:TIM beta/alpha-barrel
Superfamily:Bacterial luciferase-like
Family:Bacterial luciferase (alkanal monooxygenase)
10c2i7gA_



99.9 23
PDB header:oxidoreductase
Chain: A: PDB Molecule:monooxygenase;
PDBTitle: crystal structure of monooxygenase from agrobacterium tumefaciens
11c5dqpA_



99.9 14
PDB header:oxidoreductase
Chain: A: PDB Molecule:edta monooxygenase;
PDBTitle: edta monooxygenase (emoa) from chelativorans sp. bnc1
12d1luca_



99.9 20
Fold:TIM beta/alpha-barrel
Superfamily:Bacterial luciferase-like
Family:Bacterial luciferase (alkanal monooxygenase)
13d1rhca_



99.9 21
Fold:TIM beta/alpha-barrel
Superfamily:Bacterial luciferase-like
Family:F420 dependent oxidoreductases
14c2wgkA_



99.9 22
PDB header:oxidoreductase
Chain: A: PDB Molecule:3,6-diketocamphane 1,6 monooxygenase;
PDBTitle: type ii baeyer-villiger monooxygenase oxygenating2 constituent of 3,6-diketocamphane 1,6 monooxygenase from3 pseudomonas putida
15c6friD_



99.9 23
PDB header:oxidoreductase
Chain: D: PDB Molecule:alkanal monooxygenase beta chain;
PDBTitle: structure of luxb from photobacterium leiognathi
16d1ezwa_



99.9 25
Fold:TIM beta/alpha-barrel
Superfamily:Bacterial luciferase-like
Family:F420 dependent oxidoreductases
17c5wanA_



99.9 17
PDB header:oxidoreductase
Chain: A: PDB Molecule:pyrimidine monooxygenase ruta;
PDBTitle: crystal structure of a flavoenzyme ruta in the pyrimidine catabolic2 pathway
18c6ak1B_



99.9 22
PDB header:oxidoreductase
Chain: B: PDB Molecule:dimethyl-sulfide monooxygenase;
PDBTitle: crystal structure of dmoa from hyphomicrobium sulfonivorans
19c3c8nB_



99.9 23
PDB header:oxidoreductase
Chain: B: PDB Molecule:probable f420-dependent glucose-6-phosphate dehydrogenase
PDBTitle: crystal structure of apo-fgd1 from mycobacterium tuberculosis
20c1z69D_



99.9 25
PDB header:oxidoreductase
Chain: D: PDB Molecule:coenzyme f420-dependent n(5),n(10)-
PDBTitle: crystal structure of methylenetetrahydromethanopterin2 reductase (mer) in complex with coenzyme f420
21d1f07a_



not modelled 99.9 24
Fold:TIM beta/alpha-barrel
Superfamily:Bacterial luciferase-like
Family:F420 dependent oxidoreductases
22d1nqka_



not modelled 99.9 21
Fold:TIM beta/alpha-barrel
Superfamily:Bacterial luciferase-like
Family:Ssud-like monoxygenases
23c3qy6A_



not modelled 67.1 32
PDB header:hydrolase
Chain: A: PDB Molecule:tyrosine-protein phosphatase ywqe;
PDBTitle: crystal structures of ywqe from bacillus subtilis and cpsb from2 streptococcus pneumoniae, unique metal-dependent tyrosine3 phosphatases
24d1oy0a_



not modelled 53.1 29
Fold:TIM beta/alpha-barrel
Superfamily:Phosphoenolpyruvate/pyruvate domain
Family:Ketopantoate hydroxymethyltransferase PanB
25d1oyaa_



not modelled 44.9 10
Fold:TIM beta/alpha-barrel
Superfamily:FMN-linked oxidoreductases
Family:FMN-linked oxidoreductases
26c2ze3A_



not modelled 44.8 19
PDB header:isomerase
Chain: A: PDB Molecule:dfa0005;
PDBTitle: crystal structure of dfa0005 complexed with alpha-ketoglutarate: a2 novel member of the icl/pepm superfamily from alkali-tolerant3 deinococcus ficus
27c6ei9A_



not modelled 43.9 23
PDB header:flavoprotein
Chain: A: PDB Molecule:trna-dihydrouridine synthase b;
PDBTitle: crystal structure of e. coli trna-dihydrouridine synthase b (dusb)
28c3bwwA_



not modelled 43.6 13
PDB header:metal binding protein
Chain: A: PDB Molecule:protein of unknown function duf692/cog3220;
PDBTitle: crystal structure of a duf692 family protein (hs_1138) from2 haemophilus somnus 129pt at 2.20 a resolution
29c1zlpA_



not modelled 43.4 27
PDB header:lyase
Chain: A: PDB Molecule:petal death protein;
PDBTitle: petal death protein psr132 with cysteine-linked glutaraldehyde forming2 a thiohemiacetal adduct
30c5dxxA_



not modelled 43.0 20
PDB header:oxidoreductase
Chain: A: PDB Molecule:artemisinic aldehyde delta(11(13)) reductase;
PDBTitle: crystal structure of dbr2
31d1e8ca2



not modelled 41.9 13
Fold:MurD-like peptide ligases, peptide-binding domain
Superfamily:MurD-like peptide ligases, peptide-binding domain
Family:MurCDEF C-terminal domain
32c3e96B_



not modelled 41.8 16
PDB header:lyase
Chain: B: PDB Molecule:dihydrodipicolinate synthase;
PDBTitle: crystal structure of dihydrodipicolinate synthase from bacillus2 clausii
33d1z41a1



not modelled 41.2 20
Fold:TIM beta/alpha-barrel
Superfamily:FMN-linked oxidoreductases
Family:FMN-linked oxidoreductases
34c4b5nA_



not modelled 40.8 15
PDB header:oxidoreductase
Chain: A: PDB Molecule:oxidoreductase, fmn-binding;
PDBTitle: crystal structure of oxidized shewanella yellow enzyme 4 (sye4)
35c3b0vD_



not modelled 40.6 23
PDB header:oxidoreductase/rna
Chain: D: PDB Molecule:trna-dihydrouridine synthase;
PDBTitle: trna-dihydrouridine synthase from thermus thermophilus in complex with2 trna
36c3dcpB_



not modelled 40.3 24
PDB header:hydrolase
Chain: B: PDB Molecule:histidinol-phosphatase;
PDBTitle: crystal structure of the putative histidinol phosphatase hisk from2 listeria monocytogenes. northeast structural genomics consortium3 target lmr141.
37c4lsbA_



not modelled 40.1 24
PDB header:lyase
Chain: A: PDB Molecule:lyase/mutase;
PDBTitle: crystal structure of a putative lyase/mutase from burkholderia2 cenocepacia j2315
38c2h90A_



not modelled 39.2 25
PDB header:oxidoreductase
Chain: A: PDB Molecule:xenobiotic reductase a;
PDBTitle: xenobiotic reductase a in complex with coumarin
39c3lyeA_



not modelled 38.7 33
PDB header:hydrolase
Chain: A: PDB Molecule:oxaloacetate acetyl hydrolase;
PDBTitle: crystal structure of oxaloacetate acetylhydrolase
40d1s2wa_



not modelled 38.5 27
Fold:TIM beta/alpha-barrel
Superfamily:Phosphoenolpyruvate/pyruvate domain
Family:Phosphoenolpyruvate mutase/Isocitrate lyase-like
41c2wjeA_



not modelled 38.0 16
PDB header:hydrolase
Chain: A: PDB Molecule:tyrosine-protein phosphatase cpsb;
PDBTitle: crystal structure of the tyrosine phosphatase cps4b from2 steptococcus pneumoniae tigr4.
42c4a3uB_



not modelled 37.8 20
PDB header:oxidoreductase
Chain: B: PDB Molecule:nadh\:flavin oxidoreductase/nadh oxidase;
PDBTitle: x-structure of the old yellow enzyme homologue from zymomonas mobilis2 (ncr)
43c4tmcB_



not modelled 37.3 20
PDB header:flavoprotein
Chain: B: PDB Molecule:old yellow enzyme;
PDBTitle: crystal structure of old yellow enzyme from candida macedoniensis2 aku4588 complexed with p-hydroxybenzaldehyde
44d1vjia_



not modelled 36.9 20
Fold:TIM beta/alpha-barrel
Superfamily:FMN-linked oxidoreductases
Family:FMN-linked oxidoreductases
45d1gwja_



not modelled 36.6 25
Fold:TIM beta/alpha-barrel
Superfamily:FMN-linked oxidoreductases
Family:FMN-linked oxidoreductases
46c2qiwA_



not modelled 35.8 31
PDB header:transferase
Chain: A: PDB Molecule:pep phosphonomutase;
PDBTitle: crystal structure of a putative phosphoenolpyruvate phosphonomutase2 (ncgl1015, cgl1060) from corynebacterium glutamicum atcc 13032 at3 1.80 a resolution
47c3l5aA_



not modelled 35.0 15
PDB header:oxidoreductase
Chain: A: PDB Molecule:nadh/flavin oxidoreductase/nadh oxidase;
PDBTitle: crystal structure of a probable nadh-dependent flavin oxidoreductase2 from staphylococcus aureus
48c3fa4D_



not modelled 35.0 33
PDB header:lyase
Chain: D: PDB Molecule:2,3-dimethylmalate lyase;
PDBTitle: crystal structure of 2,3-dimethylmalate lyase, a pep mutase/isocitrate2 lyase superfamily member, triclinic crystal form
49c2gq8A_



not modelled 34.9 25
PDB header:oxidoreductase
Chain: A: PDB Molecule:oxidoreductase, fmn-binding;
PDBTitle: structure of sye1, an oye homologue from s. ondeidensis, in complex2 with p-hydroxyacetophenone
50d1muma_



not modelled 34.7 20
Fold:TIM beta/alpha-barrel
Superfamily:Phosphoenolpyruvate/pyruvate domain
Family:Phosphoenolpyruvate mutase/Isocitrate lyase-like
51c2yb1A_



not modelled 34.7 24
PDB header:hydrolase
Chain: A: PDB Molecule:amidohydrolase;
PDBTitle: structure of an amidohydrolase from chromobacterium violaceum (efi2 target efi-500202) with bound mn, amp and phosphate.
52d1q45a_



not modelled 34.2 20
Fold:TIM beta/alpha-barrel
Superfamily:FMN-linked oxidoreductases
Family:FMN-linked oxidoreductases
53d1vyra_



not modelled 34.2 15
Fold:TIM beta/alpha-barrel
Superfamily:FMN-linked oxidoreductases
Family:FMN-linked oxidoreductases
54c5n2pA_



not modelled 33.2 17
PDB header:lyase
Chain: A: PDB Molecule:tryptophan synthase alpha chain;
PDBTitle: sulfolobus solfataricus tryptophan synthase a
55c4jicB_



not modelled 32.7 28
PDB header:oxidoreductase
Chain: B: PDB Molecule:gtn reductase;
PDBTitle: glycerol trinitrate reductase nera from agrobacterium radiobacter
56c2fptA_



not modelled 32.6 17
PDB header:oxidoreductase
Chain: A: PDB Molecule:dihydroorotate dehydrogenase, mitochondrial;
PDBTitle: dual binding mode of a novel series of dhodh inhibitors
57c4rnxA_



not modelled 30.6 10
PDB header:oxidoreductase
Chain: A: PDB Molecule:nadph dehydrogenase 1;
PDBTitle: k154 circular permutation of old yellow enzyme
58d1icpa_



not modelled 30.6 20
Fold:TIM beta/alpha-barrel
Superfamily:FMN-linked oxidoreductases
Family:FMN-linked oxidoreductases
59c3d0cB_



not modelled 30.2 18
PDB header:lyase
Chain: B: PDB Molecule:dihydrodipicolinate synthase;
PDBTitle: crystal structure of dihydrodipicolinate synthase from oceanobacillus2 iheyensis at 1.9 a resolution
60c3gr7A_



not modelled 29.1 20
PDB header:oxidoreductase
Chain: A: PDB Molecule:nadph dehydrogenase;
PDBTitle: structure of oye from geobacillus kaustophilus, hexagonal crystal form
61c3eooL_



not modelled 28.9 27
PDB header:lyase
Chain: L: PDB Molecule:methylisocitrate lyase;
PDBTitle: 2.9a crystal structure of methyl-isocitrate lyase from2 burkholderia pseudomallei
62c3b8iF_



not modelled 28.8 40
PDB header:lyase
Chain: F: PDB Molecule:pa4872 oxaloacetate decarboxylase;
PDBTitle: crystal structure of oxaloacetate decarboxylase from pseudomonas2 aeruginosa (pa4872) in complex with oxalate and mg2+.
63c5uncB_



not modelled 28.8 33
PDB header:isomerase
Chain: B: PDB Molecule:phosphoenolpyruvate phosphomutase;
PDBTitle: the crystal structure of phosphoenolpyruvate phosphomutase from2 streptomyces platensis subsp. rosaceus
64d1m3ua_



not modelled 28.6 15
Fold:TIM beta/alpha-barrel
Superfamily:Phosphoenolpyruvate/pyruvate domain
Family:Ketopantoate hydroxymethyltransferase PanB
65c4rnvD_



not modelled 28.3 10
PDB header:oxidoreductase/inhibitor
Chain: D: PDB Molecule:nadph dehydrogenase 1;
PDBTitle: g303 circular permutation of old yellow enzyme with the inhibitor p-2 hydroxybenzaldehyde
66c3kruC_



not modelled 28.0 15
PDB header:oxidoreductase
Chain: C: PDB Molecule:nadh:flavin oxidoreductase/nadh oxidase;
PDBTitle: crystal structure of the thermostable old yellow enzyme from2 thermoanaerobacter pseudethanolicus e39
67c3gkaB_



not modelled 28.0 30
PDB header:oxidoreductase
Chain: B: PDB Molecule:n-ethylmaleimide reductase;
PDBTitle: crystal structure of n-ethylmaleimidine reductase from2 burkholderia pseudomallei
68d1o5ka_



not modelled 27.7 24
Fold:TIM beta/alpha-barrel
Superfamily:Aldolase
Family:Class I aldolase
69d1djqa1



not modelled 27.6 25
Fold:TIM beta/alpha-barrel
Superfamily:FMN-linked oxidoreductases
Family:FMN-linked oxidoreductases
70c6ahuJ_



not modelled 27.6 19
PDB header:hydrolase/rna
Chain: J: PDB Molecule:ribonuclease p protein subunit p30;
PDBTitle: cryo-em structure of human ribonuclease p with mature trna
71c3na8A_



not modelled 27.6 14
PDB header:lyase
Chain: A: PDB Molecule:putative dihydrodipicolinate synthetase;
PDBTitle: crystal structure of a putative dihydrodipicolinate synthetase from2 pseudomonas aeruginosa
72c4qnwA_



not modelled 26.6 25
PDB header:oxidoreductase
Chain: A: PDB Molecule:chanoclavine-i aldehyde reductase;
PDBTitle: crystal structure of easa, an old yellow enzyme from aspergillus2 fumigatus
73c6daqA_



not modelled 26.2 21
PDB header:lyase
Chain: A: PDB Molecule:phdj;
PDBTitle: phdj bound to substrate intermediate
74c4df2A_



not modelled 26.1 25
PDB header:oxidoreductase
Chain: A: PDB Molecule:nadph dehydrogenase;
PDBTitle: p. stipitis oye2.6 complexed with p-chlorophenol
75c3w9zA_



not modelled 25.4 27
PDB header:oxidoreductase
Chain: A: PDB Molecule:trna-dihydrouridine synthase c;
PDBTitle: crystal structure of dusc
76c4ot7A_



not modelled 24.9 21
PDB header:oxidoreductase
Chain: A: PDB Molecule:nadh:flavin oxidoreductase/nadh oxidase;
PDBTitle: x-structure of a variant of ncr from zymomonas mobilis
77d3d1ma1



not modelled 24.6 25
Fold:Hedgehog/DD-peptidase
Superfamily:Hedgehog/DD-peptidase
Family:Hedgehog (development protein), N-terminal signaling domain
78d1m65a_



not modelled 24.5 14
Fold:7-stranded beta/alpha barrel
Superfamily:PHP domain-like
Family:PHP domain
79c6k0aC_



not modelled 22.9 0
PDB header:rna binding protein/rna
Chain: C: PDB Molecule:ribonuclease p protein component 3;
PDBTitle: cryo-em structure of an archaeal ribonuclease p
80d1ps9a1



not modelled 22.9 20
Fold:TIM beta/alpha-barrel
Superfamily:FMN-linked oxidoreductases
Family:FMN-linked oxidoreductases
81c3ih1A_



not modelled 22.8 16
PDB header:lyase
Chain: A: PDB Molecule:methylisocitrate lyase;
PDBTitle: crystal structure of carboxyvinyl-carboxyphosphonate phosphorylmutase2 from bacillus anthracis
82c3m1nB_



not modelled 22.5 25
PDB header:signaling protein
Chain: B: PDB Molecule:sonic hedgehog protein;
PDBTitle: crystal structure of human sonic hedgehog n-terminal domain
83c3bh1A_



not modelled 22.5 45
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:upf0371 protein dip2346;
PDBTitle: crystal structure of protein dip2346 from corynebacterium diphtheriae
84c3i4eA_



not modelled 21.2 13
PDB header:lyase
Chain: A: PDB Molecule:isocitrate lyase;
PDBTitle: crystal structure of isocitrate lyase from burkholderia2 pseudomallei
85c6agzA_



not modelled 20.8 25
PDB header:oxidoreductase
Chain: A: PDB Molecule:old yellow enzyme;
PDBTitle: crystal structure of old yellow enzyme from pichia sp. aku4542
86d1o66a_



not modelled 20.7 37
Fold:TIM beta/alpha-barrel
Superfamily:Phosphoenolpyruvate/pyruvate domain
Family:Ketopantoate hydroxymethyltransferase PanB
87c6mywA_



not modelled 20.7 20
PDB header:oxidoreductase
Chain: A: PDB Molecule:n-ethylmaleimide reductase;
PDBTitle: gluconobacter ene-reductase (gluer) mutant - t36a
88d2ibge1



not modelled 20.4 25
Fold:Hedgehog/DD-peptidase
Superfamily:Hedgehog/DD-peptidase
Family:Hedgehog (development protein), N-terminal signaling domain
89c6de6B_



not modelled 20.4 15
PDB header:oxidoreductase
Chain: B: PDB Molecule:histamine dehydrogenase;
PDBTitle: 2.1 a resolution structure of histamine dehydrogenase from rhizobium2 sp. 4-9
90c1ydnA_



not modelled 20.3 17
PDB header:lyase
Chain: A: PDB Molecule:hydroxymethylglutaryl-coa lyase;
PDBTitle: crystal structure of the hmg-coa lyase from brucella melitensis,2 northeast structural genomics target lr35.
91c5epdA_



not modelled 19.8 20
PDB header:oxidorecctase
Chain: A: PDB Molecule:glycerol trinitrate reductase;
PDBTitle: crystal structure of glycerol trinitrate reductase xdpb from2 agrobacterium sp. r89-1 (apo form)
92d1yxya1



not modelled 19.8 15
Fold:TIM beta/alpha-barrel
Superfamily:Ribulose-phoshate binding barrel
Family:NanE-like
93c2w9mB_



not modelled 19.3 24
PDB header:dna replication
Chain: B: PDB Molecule:polymerase x;
PDBTitle: structure of family x dna polymerase from deinococcus2 radiodurans
94c3eb2A_



not modelled 18.5 16
PDB header:lyase
Chain: A: PDB Molecule:putative dihydrodipicolinate synthetase;
PDBTitle: crystal structure of dihydrodipicolinate synthase from2 rhodopseudomonas palustris at 2.0a resolution
95c3e0fA_



not modelled 18.3 14
PDB header:hydrolase
Chain: A: PDB Molecule:putative metal-dependent phosphoesterase;
PDBTitle: crystal structure of a putative metal-dependent phosphoesterase2 (bad_1165) from bifidobacterium adolescentis atcc 15703 at 2.40 a3 resolution
96c3vsjA_



not modelled 18.1 19
PDB header:oxidoreductase
Chain: A: PDB Molecule:2-amino-5-chlorophenol 1,6-dioxygenase alpha subunit;
PDBTitle: crystal structure of 1,6-apd (2-animophenol-1,6-dioxygenase) complexed2 with intermediate products
97c3hf3A_



not modelled 18.1 22
PDB header:oxidoreductase
Chain: A: PDB Molecule:chromate reductase;
PDBTitle: old yellow enzyme from thermus scotoductus sa-01
98c5ocsB_



not modelled 17.8 22
PDB header:flavoprotein
Chain: B: PDB Molecule:putative nadh-depentdent flavin oxidoreductase;
PDBTitle: ene-reductase (er/oye) from ralstonia (cupriavidus) metallidurans
99c4gx9A_



not modelled 17.6 14
PDB header:transferase
Chain: A: PDB Molecule:dna polymerase iii subunit epsilon,dna polymerase iii
PDBTitle: crystal structure of a dna polymerase iii alpha-epsilon chimera

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