Phyre Home Retrieve Phyre Job Id
Emailmdejesus@rockefeller.edu
DescriptionRVBD3073c_(-)_3436326_3436682
DateThu Aug 8 16:20:25 BST 2019
Unique Job IDb520ab22ca05238f
SequenceMVRETRVRVA ... Download FASTA
Job Typenormal
Job Expiry

Summary 

Top model
Image coloured by rainbow N → C terminus
Model dimensions (Å):X:42.572 Y:32.892 Z:19.245
Model (left) based on template c2k4nA_
Top template information
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:protein pf0246;
PDBTitle: nmr structure of protein pf0246 from pyrococcus furiosus:2 target pfr75 from the northeast structural genomics3 consortium
Confidence and coverage
Confidence: 20.9% Coverage: 20%
24 residues ( 20% of your sequence) have been modelled with 20.9% confidence by the single highest scoring template.
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Sequence analysis 

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Secondary structure and disorder prediction [Show] 

Domain analysis [Show] 

Detailed template information [Hide] 

 

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Template Alignment Coverage3D Model Confidence
% i.d. Template Information
1c2k4nA_
20.9 29
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:protein pf0246;
PDBTitle: nmr structure of protein pf0246 from pyrococcus furiosus:2 target pfr75 from the northeast structural genomics3 consortium
2d1bsma2
18.6 19
Fold:Fe,Mn superoxide dismutase (SOD), C-terminal domain
Superfamily:Fe,Mn superoxide dismutase (SOD), C-terminal domain
Family:Fe,Mn superoxide dismutase (SOD), C-terminal domain
3c3nahC_
17.2 19
PDB header:transferase
Chain: C: PDB Molecule:rna dependent rna polymerase;
PDBTitle: crystal structures and functional analysis of murine norovirus rna-2 dependent rna polymerase
4d2gykb1
14.1 32
Fold:His-Me finger endonucleases
Superfamily:His-Me finger endonucleases
Family:HNH-motif
5d1sh0a_
13.5 21
Fold:DNA/RNA polymerases
Superfamily:DNA/RNA polymerases
Family:RNA-dependent RNA-polymerase
6c2b43D_
13.5 21
PDB header:viral protein
Chain: D: PDB Molecule:non-structural polyprotein;
PDBTitle: crystal structure of the norwalk virus rna dependent rna polymerase2 from strain hu/nlv/dresden174/1997/ge
7d2nyba2
12.4 15
Fold:Fe,Mn superoxide dismutase (SOD), C-terminal domain
Superfamily:Fe,Mn superoxide dismutase (SOD), C-terminal domain
Family:Fe,Mn superoxide dismutase (SOD), C-terminal domain
8d1idsa2
12.4 23
Fold:Fe,Mn superoxide dismutase (SOD), C-terminal domain
Superfamily:Fe,Mn superoxide dismutase (SOD), C-terminal domain
Family:Fe,Mn superoxide dismutase (SOD), C-terminal domain
9d1jr9a2
12.2 15
Fold:Fe,Mn superoxide dismutase (SOD), C-terminal domain
Superfamily:Fe,Mn superoxide dismutase (SOD), C-terminal domain
Family:Fe,Mn superoxide dismutase (SOD), C-terminal domain
10d1y67a2
12.1 28
Fold:Fe,Mn superoxide dismutase (SOD), C-terminal domain
Superfamily:Fe,Mn superoxide dismutase (SOD), C-terminal domain
Family:Fe,Mn superoxide dismutase (SOD), C-terminal domain
11d2b3ya2
11.1 23
Fold:Aconitase iron-sulfur domain
Superfamily:Aconitase iron-sulfur domain
Family:Aconitase iron-sulfur domain
12c2zfuA_
10.8 20
PDB header:nuclear protein
Chain: A: PDB Molecule:cerebral protein 1;
PDBTitle: structure of the methyltransferase-like domain of nucleomethylin
13c3zeyO_
10.3 22
PDB header:ribosome
Chain: O: PDB Molecule:ribosomal protein s19, putative;
PDBTitle: high-resolution cryo-electron microscopy structure of the trypanosoma2 brucei ribosome
14c3j3aT_
10.0 26
PDB header:ribosome
Chain: T: PDB Molecule:40s ribosomal protein s19;
PDBTitle: structure of the human 40s ribosomal proteins
15d1gv3a2
9.9 15
Fold:Fe,Mn superoxide dismutase (SOD), C-terminal domain
Superfamily:Fe,Mn superoxide dismutase (SOD), C-terminal domain
Family:Fe,Mn superoxide dismutase (SOD), C-terminal domain
16c6a8yA_
9.6 27
PDB header:antimicrobial protein
Chain: A: PDB Molecule:yr26_sds;
PDBTitle: yr26_sds
17c5xyiT_
9.4 30
PDB header:ribosome
Chain: T: PDB Molecule:ribosomal protein s19e, putative;
PDBTitle: small subunit of trichomonas vaginalis ribosome
18d1ix9a2
9.4 12
Fold:Fe,Mn superoxide dismutase (SOD), C-terminal domain
Superfamily:Fe,Mn superoxide dismutase (SOD), C-terminal domain
Family:Fe,Mn superoxide dismutase (SOD), C-terminal domain
19d1wb8a2
9.4 24
Fold:Fe,Mn superoxide dismutase (SOD), C-terminal domain
Superfamily:Fe,Mn superoxide dismutase (SOD), C-terminal domain
Family:Fe,Mn superoxide dismutase (SOD), C-terminal domain
20c2c55A_
9.3 29
PDB header:viral protein
Chain: A: PDB Molecule:protein p6;
PDBTitle: solution structure of the human immunodeficiency virus type2 1 p6 protein
21c6az1X_
not modelled 9.2 22
PDB header:ribosome/antibiotic
Chain: X: PDB Molecule:ribosomal protein s19e;
PDBTitle: cryo-em structure of the small subunit of leishmania ribosome bound to2 paromomycin
22c3j38T_
not modelled 9.0 32
PDB header:ribosome
Chain: T: PDB Molecule:40s ribosomal protein s19a;
PDBTitle: structure of the d. melanogaster 40s ribosomal proteins
23d1b06a2
not modelled 8.8 28
Fold:Fe,Mn superoxide dismutase (SOD), C-terminal domain
Superfamily:Fe,Mn superoxide dismutase (SOD), C-terminal domain
Family:Fe,Mn superoxide dismutase (SOD), C-terminal domain
24d1p7ga2
not modelled 8.4 12
Fold:Fe,Mn superoxide dismutase (SOD), C-terminal domain
Superfamily:Fe,Mn superoxide dismutase (SOD), C-terminal domain
Family:Fe,Mn superoxide dismutase (SOD), C-terminal domain
25d1uera2
not modelled 8.1 28
Fold:Fe,Mn superoxide dismutase (SOD), C-terminal domain
Superfamily:Fe,Mn superoxide dismutase (SOD), C-terminal domain
Family:Fe,Mn superoxide dismutase (SOD), C-terminal domain
26c2xznT_
not modelled 8.0 15
PDB header:ribosome
Chain: T: PDB Molecule:rps19e;
PDBTitle: crystal structure of the eukaryotic 40s ribosomal2 subunit in complex with initiation factor 1. this file3 contains the 40s subunit and initiation factor for4 molecule 2
27d1my6a2
not modelled 7.8 15
Fold:Fe,Mn superoxide dismutase (SOD), C-terminal domain
Superfamily:Fe,Mn superoxide dismutase (SOD), C-terminal domain
Family:Fe,Mn superoxide dismutase (SOD), C-terminal domain
28c3bl9B_
not modelled 7.7 34
PDB header:hydrolase
Chain: B: PDB Molecule:scavenger mrna-decapping enzyme dcps;
PDBTitle: synthetic gene encoded dcps bound to inhibitor dg157493
29d1coja2
not modelled 7.5 15
Fold:Fe,Mn superoxide dismutase (SOD), C-terminal domain
Superfamily:Fe,Mn superoxide dismutase (SOD), C-terminal domain
Family:Fe,Mn superoxide dismutase (SOD), C-terminal domain
30c3h4rA_
not modelled 7.2 35
PDB header:hydrolase
Chain: A: PDB Molecule:exodeoxyribonuclease 8;
PDBTitle: crystal structure of e. coli rece exonuclease
31c1xmlA_
not modelled 7.1 34
PDB header:chaperone
Chain: A: PDB Molecule:heat shock-like protein 1;
PDBTitle: structure of human dcps
32c5xxuT_
not modelled 6.8 26
PDB header:ribosome
Chain: T: PDB Molecule:ribosomal protein es19;
PDBTitle: small subunit of toxoplasma gondii ribosome
33c4nz0F_
not modelled 6.8 13
PDB header:transferase
Chain: F: PDB Molecule:genome polyprotein;
PDBTitle: the emcv 3dpol structure at 2.8a resolution
34d1e8ca2
not modelled 6.7 21
Fold:MurD-like peptide ligases, peptide-binding domain
Superfamily:MurD-like peptide ligases, peptide-binding domain
Family:MurCDEF C-terminal domain
35c2lnaA_
not modelled 6.6 13
PDB header:hydrolase
Chain: A: PDB Molecule:afg3-like protein 2;
PDBTitle: solution nmr structure of the mitochondrial inner membrane domain2 (residues 164-251), ftsh_ext, from the paraplegin-like protein afg3l23 from homo sapiens, northeast structural genomics consortium target4 hr6741a
36c3iz5N_
not modelled 6.5 43
PDB header:ribosome
Chain: N: PDB Molecule:60s ribosomal protein l14 (l14e);
PDBTitle: localization of the large subunit ribosomal proteins into a 5.5 a2 cryo-em map of triticum aestivum translating 80s ribosome
37c2jofA_
not modelled 6.3 38
PDB header:de novo protein
Chain: A: PDB Molecule:trp-cage;
PDBTitle: the trp-cage: optimizing the stability of a globular2 miniprotein
38c3iz6S_
not modelled 6.3 26
PDB header:ribosome
Chain: S: PDB Molecule:40s ribosomal protein s19 (s19e);
PDBTitle: localization of the small subunit ribosomal proteins into a 5.5 a2 cryo-em map of triticum aestivum translating 80s ribosome
39c4bpxB_
not modelled 6.3 63
PDB header:transferase
Chain: B: PDB Molecule:dna polymerase alpha catalytic subunit, dna primase large
PDBTitle: crystal structure of human primase in complex with the primase-2 binding motif of dna polymerase alpha
40d3sdpa2
not modelled 6.3 19
Fold:Fe,Mn superoxide dismutase (SOD), C-terminal domain
Superfamily:Fe,Mn superoxide dismutase (SOD), C-terminal domain
Family:Fe,Mn superoxide dismutase (SOD), C-terminal domain
41c5tx8A_
not modelled 6.2 21
PDB header:de novo protein
Chain: A: PDB Molecule:hh2;
PDBTitle: solution structure of the de novo mini protein ghh_44
42d2p4ka2
not modelled 6.2 23
Fold:Fe,Mn superoxide dismutase (SOD), C-terminal domain
Superfamily:Fe,Mn superoxide dismutase (SOD), C-terminal domain
Family:Fe,Mn superoxide dismutase (SOD), C-terminal domain
43d1unfx2
not modelled 6.1 27
Fold:Fe,Mn superoxide dismutase (SOD), C-terminal domain
Superfamily:Fe,Mn superoxide dismutase (SOD), C-terminal domain
Family:Fe,Mn superoxide dismutase (SOD), C-terminal domain
44d1vlra1
not modelled 5.8 34
Fold:HIT-like
Superfamily:HIT-like
Family:mRNA decapping enzyme DcpS C-terminal domain
45c4i1tA_
not modelled 5.8 24
PDB header:viral protein
Chain: A: PDB Molecule:rna-directed rna polymerase l;
PDBTitle: crystal structure of the cap-snatching endonuclease from pichinde2 virus
46c5yvqB_
not modelled 5.7 20
PDB header:viral protein
Chain: B: PDB Molecule:tail fiber assembly protein u;
PDBTitle: complex of mu phage tail fiber and its chaperone
47d1u09a_
not modelled 5.6 11
Fold:DNA/RNA polymerases
Superfamily:DNA/RNA polymerases
Family:RNA-dependent RNA-polymerase
48d1mnga2
not modelled 5.5 19
Fold:Fe,Mn superoxide dismutase (SOD), C-terminal domain
Superfamily:Fe,Mn superoxide dismutase (SOD), C-terminal domain
Family:Fe,Mn superoxide dismutase (SOD), C-terminal domain
49c4makA_
not modelled 5.5 17
PDB header:hydrolase
Chain: A: PDB Molecule:crispr-associated endoribonuclease cas2;
PDBTitle: crystal structure of a putative ssrna endonuclease cas2, crispr2 adaptation protein from e.coli
50c1y6uA_
not modelled 5.5 22
PDB header:dna binding protein
Chain: A: PDB Molecule:excisionase from transposon tn916;
PDBTitle: the structure of the excisionase (xis) protein from2 conjugative transposon tn916 provides insights into the3 regulation of heterobivalent tyrosine recombinases
51c3jsbA_
not modelled 5.5 28
PDB header:rna binding protein
Chain: A: PDB Molecule:rna-directed rna polymerase;
PDBTitle: crystal structure of the n-terminal domain of the lymphocytic2 choriomeningitis virus l protein
52c3m05A_
not modelled 5.4 6
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:uncharacterized protein pepe_1480;
PDBTitle: the crystal structure of a functionally unknown protein pepe_1480 from2 pediococcus pentosaceus atcc 25745
53c4p6iB_
not modelled 5.4 17
PDB header:hydrolase
Chain: B: PDB Molecule:crispr-associated endoribonuclease cas2;
PDBTitle: crystal structure of the cas1-cas2 complex from escherichia coli
54d2jb0b1
not modelled 5.3 32
Fold:His-Me finger endonucleases
Superfamily:His-Me finger endonucleases
Family:HNH-motif
55c5jcaS_
not modelled 5.3 16
PDB header:oxidoreductase
Chain: S: PDB Molecule:nadh-dependent ferredoxin:nadp oxidoreductase (nfni)
PDBTitle: nadp(h) bound nadh-dependent ferredoxin:nadp oxidoreductase (nfni)2 from pyrococcus furiosus
56c7ceiB_
not modelled 5.3 32
PDB header:immune system
Chain: B: PDB Molecule:protein (colicin e7 immunity protein);
PDBTitle: the endonuclease domain of colicin e7 in complex with its inhibitor2 im7 protein
57d1dt0a2
not modelled 5.3 19
Fold:Fe,Mn superoxide dismutase (SOD), C-terminal domain
Superfamily:Fe,Mn superoxide dismutase (SOD), C-terminal domain
Family:Fe,Mn superoxide dismutase (SOD), C-terminal domain
58c4miwA_
not modelled 5.2 17
PDB header:viral protein, transferase
Chain: A: PDB Molecule:rna-directed rna polymerase l;
PDBTitle: high-resolution structure of the n-terminal endonuclease domain of the2 lassa virus l polymerase
59c5uoiA_
not modelled 5.2 30
PDB header:de novo protein
Chain: A: PDB Molecule:hhh_rd1_0142;
PDBTitle: solution structure of the de novo mini protein hhh_rd1_0142

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