Phyre Home Retrieve Phyre Job Id
Emailmdejesus@rockefeller.edu
DescriptionRVBD3079c_(-)_3441767_3442594
DateThu Aug 8 16:20:25 BST 2019
Unique Job ID7d2d4a053c57da23
SequenceMQFGVLTFVT ... Download FASTA
Job Typenormal
Job Expiry

Summary 

Top model
Image coloured by rainbow N → C terminus
Model dimensions (Å):X:53.656 Y:43.240 Z:62.711
Model (left) based on template c2b81D_
Top template information
PDB header:oxidoreductase
Chain: D: PDB Molecule:luciferase-like monooxygenase;
PDBTitle: crystal structure of the luciferase-like monooxygenase from bacillus2 cereus
Confidence and coverage
Confidence:100.0% Coverage: 95%
260 residues ( 95% of your sequence) have been modelled with 100.0% confidence by the single highest scoring template.
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Sequence analysis 

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Secondary structure and disorder prediction [Show] 

Domain analysis [Show] 

Detailed template information [Hide] 

 

#
Template Alignment Coverage3D Model Confidence
% i.d. Template Information
1c2b81D_
100.0 27
PDB header:oxidoreductase
Chain: D: PDB Molecule:luciferase-like monooxygenase;
PDBTitle: crystal structure of the luciferase-like monooxygenase from bacillus2 cereus
2c5tlcA_
100.0 25
PDB header:oxidoreductase
Chain: A: PDB Molecule:dibenzothiophene desulfurization enzyme a;
PDBTitle: crystal structure of bdsa from bacillus subtilis wu-s2b
3d1luca_
100.0 22
Fold:TIM beta/alpha-barrel
Superfamily:Bacterial luciferase-like
Family:Bacterial luciferase (alkanal monooxygenase)
4d1lucb_
100.0 18
Fold:TIM beta/alpha-barrel
Superfamily:Bacterial luciferase-like
Family:Bacterial luciferase (alkanal monooxygenase)
5c3raoB_
100.0 25
PDB header:structural genomics, unknown function
Chain: B: PDB Molecule:putative luciferase-like monooxygenase;
PDBTitle: crystal structure of the luciferase-like monooxygenase from bacillus2 cereus atcc 10987.
6c5w4zA_
100.0 23
PDB header:flavoprotein
Chain: A: PDB Molecule:riboflavin lyase;
PDBTitle: crystal structure of riboflavin lyase (rcae) with modified fmn and2 substrate riboflavin
7c3sdoB_
100.0 25
PDB header:oxidoreductase
Chain: B: PDB Molecule:nitrilotriacetate monooxygenase;
PDBTitle: structure of a nitrilotriacetate monooxygenase from burkholderia2 pseudomallei
8c1z69D_
100.0 22
PDB header:oxidoreductase
Chain: D: PDB Molecule:coenzyme f420-dependent n(5),n(10)-
PDBTitle: crystal structure of methylenetetrahydromethanopterin2 reductase (mer) in complex with coenzyme f420
9c6friD_
100.0 18
PDB header:oxidoreductase
Chain: D: PDB Molecule:alkanal monooxygenase beta chain;
PDBTitle: structure of luxb from photobacterium leiognathi
10d1tvla_
100.0 21
Fold:TIM beta/alpha-barrel
Superfamily:Bacterial luciferase-like
Family:Ssud-like monoxygenases
11c1tvlA_
100.0 21
PDB header:oxidoreductase
Chain: A: PDB Molecule:protein ytnj;
PDBTitle: structure of ytnj from bacillus subtilis
12d1ezwa_
100.0 25
Fold:TIM beta/alpha-barrel
Superfamily:Bacterial luciferase-like
Family:F420 dependent oxidoreductases
13c3b9nB_
100.0 18
PDB header:oxidoreductase
Chain: B: PDB Molecule:alkane monoxygenase;
PDBTitle: crystal structure of long-chain alkane monooxygenase (lada)
14c2i7gA_
100.0 23
PDB header:oxidoreductase
Chain: A: PDB Molecule:monooxygenase;
PDBTitle: crystal structure of monooxygenase from agrobacterium tumefaciens
15c5dqpA_
100.0 21
PDB header:oxidoreductase
Chain: A: PDB Molecule:edta monooxygenase;
PDBTitle: edta monooxygenase (emoa) from chelativorans sp. bnc1
16d1f07a_
100.0 23
Fold:TIM beta/alpha-barrel
Superfamily:Bacterial luciferase-like
Family:F420 dependent oxidoreductases
17c3c8nB_
100.0 21
PDB header:oxidoreductase
Chain: B: PDB Molecule:probable f420-dependent glucose-6-phosphate dehydrogenase
PDBTitle: crystal structure of apo-fgd1 from mycobacterium tuberculosis
18d1rhca_
100.0 23
Fold:TIM beta/alpha-barrel
Superfamily:Bacterial luciferase-like
Family:F420 dependent oxidoreductases
19c5wanA_
100.0 22
PDB header:oxidoreductase
Chain: A: PDB Molecule:pyrimidine monooxygenase ruta;
PDBTitle: crystal structure of a flavoenzyme ruta in the pyrimidine catabolic2 pathway
20c6ak1B_
100.0 22
PDB header:oxidoreductase
Chain: B: PDB Molecule:dimethyl-sulfide monooxygenase;
PDBTitle: crystal structure of dmoa from hyphomicrobium sulfonivorans
21c2wgkA_
not modelled 100.0 21
PDB header:oxidoreductase
Chain: A: PDB Molecule:3,6-diketocamphane 1,6 monooxygenase;
PDBTitle: type ii baeyer-villiger monooxygenase oxygenating2 constituent of 3,6-diketocamphane 1,6 monooxygenase from3 pseudomonas putida
22d1nqka_
not modelled 100.0 20
Fold:TIM beta/alpha-barrel
Superfamily:Bacterial luciferase-like
Family:Ssud-like monoxygenases
23d1nfpa_
not modelled 99.2 13
Fold:TIM beta/alpha-barrel
Superfamily:Bacterial luciferase-like
Family:Non-fluorescent flavoprotein (luxF, FP390)
24d1fvpa_
not modelled 86.3 10
Fold:TIM beta/alpha-barrel
Superfamily:Bacterial luciferase-like
Family:Non-fluorescent flavoprotein (luxF, FP390)
25c5zfsA_
not modelled 82.4 19
PDB header:isomerase
Chain: A: PDB Molecule:d-allulose-3-epimerase;
PDBTitle: crystal structure of arthrobacter globiformis m30 sugar epimerase2 which can produce d-allulose from d-fructose
26c3cqkB_
not modelled 76.7 16
PDB header:isomerase
Chain: B: PDB Molecule:l-ribulose-5-phosphate 3-epimerase ulae;
PDBTitle: crystal structure of l-xylulose-5-phosphate 3-epimerase ulae (form b)2 complex with zn2+ and sulfate
27c3wqoB_
not modelled 72.4 22
PDB header:unknown function
Chain: B: PDB Molecule:uncharacterized protein mj1311;
PDBTitle: crystal structure of d-tagatose 3-epimerase-like protein
28d1xp3a1
not modelled 66.9 7
Fold:TIM beta/alpha-barrel
Superfamily:Xylose isomerase-like
Family:Endonuclease IV
29c4ovxA_
not modelled 63.5 13
PDB header:isomerase
Chain: A: PDB Molecule:xylose isomerase domain protein tim barrel;
PDBTitle: crystal structure of xylose isomerase domain protein from planctomyces2 limnophilus dsm 3776
30c3obeB_
not modelled 59.9 16
PDB header:isomerase
Chain: B: PDB Molecule:sugar phosphate isomerase/epimerase;
PDBTitle: crystal structure of a sugar phosphate isomerase/epimerase (bdi_3400)2 from parabacteroides distasonis atcc 8503 at 1.70 a resolution
31c3vniC_
not modelled 59.7 14
PDB header:isomerase
Chain: C: PDB Molecule:xylose isomerase domain protein tim barrel;
PDBTitle: crystal structures of d-psicose 3-epimerase from clostridium2 cellulolyticum h10 and its complex with ketohexose sugars
32c2zvrA_
not modelled 58.5 10
PDB header:isomerase
Chain: A: PDB Molecule:uncharacterized protein tm_0416;
PDBTitle: crystal structure of a d-tagatose 3-epimerase-related protein from2 thermotoga maritima
33c2x7vA_
not modelled 58.3 11
PDB header:hydrolase
Chain: A: PDB Molecule:probable endonuclease 4;
PDBTitle: crystal structure of thermotoga maritima endonuclease iv in2 the presence of zinc
34c3cnyA_
not modelled 57.3 19
PDB header:biosynthetic protein
Chain: A: PDB Molecule:inositol catabolism protein iole;
PDBTitle: crystal structure of a putative inositol catabolism protein iole2 (iole, lp_3607) from lactobacillus plantarum wcfs1 at 1.85 a3 resolution
35c2ekcA_
not modelled 52.6 18
PDB header:lyase
Chain: A: PDB Molecule:tryptophan synthase alpha chain;
PDBTitle: structural study of project id aq_1548 from aquifex aeolicus vf5
36c3l23A_
not modelled 50.7 16
PDB header:isomerase
Chain: A: PDB Molecule:sugar phosphate isomerase/epimerase;
PDBTitle: crystal structure of sugar phosphate isomerase/epimerase2 (yp_001303399.1) from parabacteroides distasonis atcc 8503 at 1.70 a3 resolution
37c2hk1D_
not modelled 47.0 10
PDB header:isomerase
Chain: D: PDB Molecule:d-psicose 3-epimerase;
PDBTitle: crystal structure of d-psicose 3-epimerase (dpease) in the presence of2 d-fructose
38d1i60a_
not modelled 44.8 13
Fold:TIM beta/alpha-barrel
Superfamily:Xylose isomerase-like
Family:IolI-like
39d1m5wa_
not modelled 37.1 15
Fold:TIM beta/alpha-barrel
Superfamily:Pyridoxine 5'-phosphate synthase
Family:Pyridoxine 5'-phosphate synthase
40c3dcpB_
not modelled 36.2 16
PDB header:hydrolase
Chain: B: PDB Molecule:histidinol-phosphatase;
PDBTitle: crystal structure of the putative histidinol phosphatase hisk from2 listeria monocytogenes. northeast structural genomics consortium3 target lmr141.
41c2yb1A_
not modelled 36.1 22
PDB header:hydrolase
Chain: A: PDB Molecule:amidohydrolase;
PDBTitle: structure of an amidohydrolase from chromobacterium violaceum (efi2 target efi-500202) with bound mn, amp and phosphate.
42c3dx5A_
not modelled 34.9 16
PDB header:lyase
Chain: A: PDB Molecule:uncharacterized protein asbf;
PDBTitle: crystal structure of the probable 3-dhs dehydratase asbf involved in2 the petrobactin synthesis from bacillus anthracis
43c4cngB_
not modelled 34.5 3
PDB header:transferase
Chain: B: PDB Molecule:spou rrna methylase;
PDBTitle: crystal structure of sulfolobus acidocaldarius trmj in2 complex with s-adenosyl-l-homocysteine
44c5i4rA_
not modelled 33.6 17
PDB header:toxin/antitoxin
Chain: A: PDB Molecule:contact-dependent inhibitor a;
PDBTitle: contact-dependent inhibition system from escherichia coli nc101 -2 ternary cdia/cdii/ef-tu complex (trypsin-modified)
45c3vndD_
not modelled 33.3 26
PDB header:lyase
Chain: D: PDB Molecule:tryptophan synthase alpha chain;
PDBTitle: crystal structure of tryptophan synthase alpha-subunit from the2 psychrophile shewanella frigidimarina k14-2
46d1viza_
not modelled 32.9 15
Fold:TIM beta/alpha-barrel
Superfamily:FMN-linked oxidoreductases
Family:FMN-linked oxidoreductases
47c3gk0H_
not modelled 32.7 21
PDB header:transferase
Chain: H: PDB Molecule:pyridoxine 5'-phosphate synthase;
PDBTitle: crystal structure of pyridoxal phosphate biosynthetic protein from2 burkholderia pseudomallei
48c3e38A_
not modelled 31.8 20
PDB header:hydrolase
Chain: A: PDB Molecule:two-domain protein containing predicted php-like metal-
PDBTitle: crystal structure of a two-domain protein containing predicted php-2 like metal-dependent phosphoesterase (bvu_3505) from bacteroides3 vulgatus atcc 8482 at 2.20 a resolution
49c6daqA_
not modelled 30.7 10
PDB header:lyase
Chain: A: PDB Molecule:phdj;
PDBTitle: phdj bound to substrate intermediate
50d1qlma_
not modelled 29.6 18
Fold:Methenyltetrahydromethanopterin cyclohydrolase
Superfamily:Methenyltetrahydromethanopterin cyclohydrolase
Family:Methenyltetrahydromethanopterin cyclohydrolase
51c2w9mB_
not modelled 27.6 28
PDB header:dna replication
Chain: B: PDB Molecule:polymerase x;
PDBTitle: structure of family x dna polymerase from deinococcus2 radiodurans
52c5dlcC_
not modelled 27.4 15
PDB header:transferase
Chain: C: PDB Molecule:pyridoxine 5'-phosphate synthase;
PDBTitle: x-ray crystal structure of a pyridoxine 5-prime-phosphate synthase2 from pseudomonas aeruginosa
53c5c54D_
not modelled 26.7 21
PDB header:lyase
Chain: D: PDB Molecule:dihydrodipicolinate synthase/n-acetylneuraminate lyase;
PDBTitle: crystal structure of a novel n-acetylneuraminic acid lyase from2 corynebacterium glutamicum
54c3ju2A_
not modelled 25.7 17
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:uncharacterized protein smc04130;
PDBTitle: crystal structure of protein smc04130 from sinorhizobium meliloti 1021
55c4fioA_
not modelled 25.4 21
PDB header:hydrolase
Chain: A: PDB Molecule:methenyltetrahydromethanopterin cyclohydrolase;
PDBTitle: crystal structure of methenyltetrahydromethanopterin cyclohydrolase2 from methanobrevibacter ruminantium
56c3lmzA_
not modelled 25.1 6
PDB header:isomerase
Chain: A: PDB Molecule:putative sugar isomerase;
PDBTitle: crystal structure of putative sugar isomerase. (yp_001305105.1) from2 parabacteroides distasonis atcc 8503 at 1.44 a resolution
57c3lyeA_
not modelled 24.3 27
PDB header:hydrolase
Chain: A: PDB Molecule:oxaloacetate acetyl hydrolase;
PDBTitle: crystal structure of oxaloacetate acetylhydrolase
58c3ih1A_
not modelled 23.8 24
PDB header:lyase
Chain: A: PDB Molecule:methylisocitrate lyase;
PDBTitle: crystal structure of carboxyvinyl-carboxyphosphonate phosphorylmutase2 from bacillus anthracis
59d2q02a1
not modelled 23.7 10
Fold:TIM beta/alpha-barrel
Superfamily:Xylose isomerase-like
Family:IolI-like
60c3e0fA_
not modelled 23.6 22
PDB header:hydrolase
Chain: A: PDB Molecule:putative metal-dependent phosphoesterase;
PDBTitle: crystal structure of a putative metal-dependent phosphoesterase2 (bad_1165) from bifidobacterium adolescentis atcc 15703 at 2.40 a3 resolution
61c6k0aC_
not modelled 23.0 11
PDB header:rna binding protein/rna
Chain: C: PDB Molecule:ribonuclease p protein component 3;
PDBTitle: cryo-em structure of an archaeal ribonuclease p
62c3ikzA_
not modelled 22.9 18
PDB header:transferase
Chain: A: PDB Molecule:phosphopantetheine adenylyltransferase;
PDBTitle: crystal structure of phosphopantetheine adenylyltransferase from2 burkholderia pseudomallei
63c1zlpA_
not modelled 22.3 33
PDB header:lyase
Chain: A: PDB Molecule:petal death protein;
PDBTitle: petal death protein psr132 with cysteine-linked glutaraldehyde forming2 a thiohemiacetal adduct
64c3eb2A_
not modelled 22.2 13
PDB header:lyase
Chain: A: PDB Molecule:putative dihydrodipicolinate synthetase;
PDBTitle: crystal structure of dihydrodipicolinate synthase from2 rhodopseudomonas palustris at 2.0a resolution
65c4i7vD_
not modelled 20.6 15
PDB header:biosynthetic protein
Chain: D: PDB Molecule:dihydrodipicolinate synthase;
PDBTitle: agrobacterium tumefaciens dhdps with pyruvate
66c3ngfA_
not modelled 20.1 13
PDB header:isomerase
Chain: A: PDB Molecule:ap endonuclease, family 2;
PDBTitle: crystal structure of ap endonuclease, family 2 from brucella2 melitensis
67c5tchG_
not modelled 20.0 24
PDB header:lyase
Chain: G: PDB Molecule:tryptophan synthase alpha chain;
PDBTitle: crystal structure of tryptophan synthase from m. tuberculosis -2 ligand-free form, trpa-g66v mutant
68c5zhzA_
not modelled 19.6 33
PDB header:dna binding protein
Chain: A: PDB Molecule:probable endonuclease 4;
PDBTitle: crystal structure of the apurinic/apyrimidinic endonuclease iv from2 mycobacterium tuberculosis
69c4mg4G_
not modelled 19.6 13
PDB header:unknown function
Chain: G: PDB Molecule:phosphonomutase;
PDBTitle: crystal structure of a putative phosphonomutase from burkholderia2 cenocepacia j2315
70c2qiwA_
not modelled 19.4 25
PDB header:transferase
Chain: A: PDB Molecule:pep phosphonomutase;
PDBTitle: crystal structure of a putative phosphoenolpyruvate phosphonomutase2 (ncgl1015, cgl1060) from corynebacterium glutamicum atcc 13032 at3 1.80 a resolution
71d1m65a_
not modelled 19.4 12
Fold:7-stranded beta/alpha barrel
Superfamily:PHP domain-like
Family:PHP domain
72c3auoB_
not modelled 19.3 25
PDB header:transferase/dna
Chain: B: PDB Molecule:dna polymerase beta family (x family);
PDBTitle: dna polymerase x from thermus thermophilus hb8 ternary complex with 1-2 nt gapped dna and ddgtp
73d1uoua2
not modelled 19.2 16
Fold:Nucleoside phosphorylase/phosphoribosyltransferase catalytic domain
Superfamily:Nucleoside phosphorylase/phosphoribosyltransferase catalytic domain
Family:Nucleoside phosphorylase/phosphoribosyltransferase catalytic domain
74c3b4uB_
not modelled 19.0 10
PDB header:lyase
Chain: B: PDB Molecule:dihydrodipicolinate synthase;
PDBTitle: crystal structure of dihydrodipicolinate synthase from agrobacterium2 tumefaciens str. c58
75d1oy0a_
not modelled 19.0 11
Fold:TIM beta/alpha-barrel
Superfamily:Phosphoenolpyruvate/pyruvate domain
Family:Ketopantoate hydroxymethyltransferase PanB
76d1ujqa_
not modelled 18.3 13
Fold:TIM beta/alpha-barrel
Superfamily:Phosphoenolpyruvate/pyruvate domain
Family:Phosphoenolpyruvate mutase/Isocitrate lyase-like
77c3vtfA_
not modelled 18.0 13
PDB header:oxidoreductase
Chain: A: PDB Molecule:udp-glucose 6-dehydrogenase;
PDBTitle: structure of a udp-glucose dehydrogenase from the hyperthermophilic2 archaeon pyrobaculum islandicum
78c3qy6A_
not modelled 18.0 20
PDB header:hydrolase
Chain: A: PDB Molecule:tyrosine-protein phosphatase ywqe;
PDBTitle: crystal structures of ywqe from bacillus subtilis and cpsb from2 streptococcus pneumoniae, unique metal-dependent tyrosine3 phosphatases
79c2yxgD_
not modelled 17.9 16
PDB header:lyase
Chain: D: PDB Molecule:dihydrodipicolinate synthase;
PDBTitle: crystal structure of dihyrodipicolinate synthase (dapa)
80c3gg2B_
not modelled 17.9 8
PDB header:oxidoreductase
Chain: B: PDB Molecule:sugar dehydrogenase, udp-glucose/gdp-mannose dehydrogenase
PDBTitle: crystal structure of udp-glucose 6-dehydrogenase from porphyromonas2 gingivalis bound to product udp-glucuronate
81c3pueA_
not modelled 17.7 14
PDB header:lyase
Chain: A: PDB Molecule:dihydrodipicolinate synthase;
PDBTitle: crystal structure of the complex of dhydrodipicolinate synthase from2 acinetobacter baumannii with lysine at 2.6a resolution
82c3fluD_
not modelled 17.7 11
PDB header:lyase
Chain: D: PDB Molecule:dihydrodipicolinate synthase;
PDBTitle: crystal structure of dihydrodipicolinate synthase from the pathogen2 neisseria meningitidis
83c3fkkA_
not modelled 17.6 14
PDB header:lyase
Chain: A: PDB Molecule:l-2-keto-3-deoxyarabonate dehydratase;
PDBTitle: structure of l-2-keto-3-deoxyarabonate dehydratase
84c3s5oA_
not modelled 17.2 10
PDB header:lyase
Chain: A: PDB Molecule:4-hydroxy-2-oxoglutarate aldolase, mitochondrial;
PDBTitle: crystal structure of human 4-hydroxy-2-oxoglutarate aldolase bound to2 pyruvate
85d1o5ka_
not modelled 17.1 16
Fold:TIM beta/alpha-barrel
Superfamily:Aldolase
Family:Class I aldolase
86c3noeA_
not modelled 17.0 13
PDB header:lyase
Chain: A: PDB Molecule:dihydrodipicolinate synthase;
PDBTitle: crystal structure of dihydrodipicolinate synthase from pseudomonas2 aeruginosa
87d1e8ca2
not modelled 16.8 14
Fold:MurD-like peptide ligases, peptide-binding domain
Superfamily:MurD-like peptide ligases, peptide-binding domain
Family:MurCDEF C-terminal domain
88c3bh1A_
not modelled 16.7 38
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:upf0371 protein dip2346;
PDBTitle: crystal structure of protein dip2346 from corynebacterium diphtheriae
89c6daoB_
not modelled 16.6 10
PDB header:lyase
Chain: B: PDB Molecule:trans-o-hydroxybenzylidenepyruvate hydratase-aldolase;
PDBTitle: nahe wt selenomethionine
90c6mqhA_
not modelled 16.6 14
PDB header:lyase
Chain: A: PDB Molecule:4-hydroxy-tetrahydrodipicolinate synthase;
PDBTitle: crystal structure of 4-hydroxy-tetrahydrodipicolinate synthase (htpa2 synthase) from burkholderia mallei
91d1x7fa2
not modelled 16.4 15
Fold:TIM beta/alpha-barrel
Superfamily:(Trans)glycosidases
Family:Outer surface protein, N-terminal domain
92c4nq1B_
not modelled 16.2 13
PDB header:lyase
Chain: B: PDB Molecule:4-hydroxy-tetrahydrodipicolinate synthase;
PDBTitle: legionella pneumophila dihydrodipicolinate synthase with first2 substrate pyruvate bound in the active site
93d1hl2a_
not modelled 16.0 11
Fold:TIM beta/alpha-barrel
Superfamily:Aldolase
Family:Class I aldolase
94c2nuxB_
not modelled 15.8 9
PDB header:lyase
Chain: B: PDB Molecule:2-keto-3-deoxygluconate/2-keto-3-deoxy-6-phospho gluconate
PDBTitle: 2-keto-3-deoxygluconate aldolase from sulfolobus acidocaldarius,2 native structure in p6522 at 2.5 a resolution
95d1yx1a1
not modelled 15.8 14
Fold:TIM beta/alpha-barrel
Superfamily:Xylose isomerase-like
Family:KguE-like
96c3x1mC_
not modelled 15.5 15
PDB header:transferase
Chain: C: PDB Molecule:phosphopantetheine adenylyltransferase;
PDBTitle: crystal structure of phosphopantetheine adenylyltransferase/ppat from2 pseudomonas aeruginosa with coa
97d1k77a_
not modelled 15.3 20
Fold:TIM beta/alpha-barrel
Superfamily:Xylose isomerase-like
Family:Hypothetical protein YgbM (EC1530)
98d1w3ia_
not modelled 15.2 11
Fold:TIM beta/alpha-barrel
Superfamily:Aldolase
Family:Class I aldolase
99c4n4qD_
not modelled 15.2 12
PDB header:lyase
Chain: D: PDB Molecule:acylneuraminate lyase;
PDBTitle: crystal structure of n-acetylneuraminate lyase from mycoplasma2 synoviae, crystal form ii

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