Phyre Home Retrieve Phyre Job Id
Emailmdejesus@rockefeller.edu
DescriptionRVBD3081_(-)_3446037_3447275
DateThu Aug 8 16:20:25 BST 2019
Unique Job ID11fff342f79d8916
SequenceVTPHYRQAAA ... Download FASTA
Job Typenormal
Job Expiry

Summary 

Top model
Image coloured by rainbow N → C terminus
Model dimensions (Å):X:40.151 Y:43.188 Z:37.405
Model (left) based on template c5uvdA_
Top template information
PDB header:transferase
Chain: A: PDB Molecule:nucleotidyltransferase-like protein;
PDBTitle: crystal structure of an antigenic nucleotidyltransferase-like protein2 from paracoccidioides brasiliensis
Confidence and coverage
Confidence: 99.0% Coverage: 31%
127 residues ( 31% of your sequence) have been modelled with 99.0% confidence by the single highest scoring template.
You may wish to submit your sequence to Phyrealarm. This will automatically scan your sequence every week for new potential templates as they appear in the Phyre2 library.
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Sequence analysis 

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Secondary structure and disorder prediction [Show] 

Domain analysis [Show] 

Detailed template information [Hide] 

 

#
Template Alignment Coverage3D Model Confidence
% i.d. Template Information
1c5uvdA_



99.0 20
PDB header:transferase
Chain: A: PDB Molecule:nucleotidyltransferase-like protein;
PDBTitle: crystal structure of an antigenic nucleotidyltransferase-like protein2 from paracoccidioides brasiliensis
2c4e8iA_



98.1 13
PDB header:transferase
Chain: A: PDB Molecule:lincosamide resistance protein;
PDBTitle: crystal structure of lincosamide antibiotic adenylyltransferase lina,2 apo
3c4ok0B_



97.6 15
PDB header:transferase
Chain: B: PDB Molecule:putative;
PDBTitle: crystal structure of putative nucleotidyltransferase from h. pylori
4c4wqkA_



95.2 17
PDB header:transferase
Chain: A: PDB Molecule:2''-aminoglycoside nucleotidyltransferase;
PDBTitle: crystal structure of aminoglycoside nucleotidylyltransferase ant(2")-2 ia, apo form
5c3h37B_



78.5 22
PDB header:transferase
Chain: B: PDB Molecule:trna nucleotidyl transferase-related protein;
PDBTitle: the structure of cca-adding enzyme apo form i
6d1ccwa_



73.0 17
Fold:Flavodoxin-like
Superfamily:Cobalamin (vitamin B12)-binding domain
Family:Cobalamin (vitamin B12)-binding domain
7d1miwa2



68.3 26
Fold:Nucleotidyltransferase
Superfamily:Nucleotidyltransferase
Family:Poly A polymerase head domain-like
8d1ou5a2



65.8 19
Fold:Nucleotidyltransferase
Superfamily:Nucleotidyltransferase
Family:Poly A polymerase head domain-like
9d1ig3a2



62.6 20
Fold:Thiamin pyrophosphokinase, catalytic domain
Superfamily:Thiamin pyrophosphokinase, catalytic domain
Family:Thiamin pyrophosphokinase, catalytic domain
10c2yn2A_



62.3 29
PDB header:hydrolase
Chain: A: PDB Molecule:uncharacterized protein ynl108c;
PDBTitle: huf protein - paralogue of the tau55 histidine phosphatase domain
11c2yn0A_



61.8 30
PDB header:transcription
Chain: A: PDB Molecule:transcription factor tau 55 kda subunit;
PDBTitle: tau55 histidine phosphatase domain
12c4oi6A_



59.4 26
PDB header:metal binding protein
Chain: A: PDB Molecule:nickel responsive protein;
PDBTitle: crystal structure analysis of nickel-bound form sco4226 from2 streptomyces coelicolor a3(2)
13c1miyB_



55.5 26
PDB header:translation, transferase
Chain: B: PDB Molecule:trna cca-adding enzyme;
PDBTitle: crystal structure of bacillus stearothermophilus cca-adding enzyme in2 complex with ctp
14c2f17A_



54.4 19
PDB header:transferase
Chain: A: PDB Molecule:thiamin pyrophosphokinase 1;
PDBTitle: mouse thiamin pyrophosphokinase in a ternary complex with2 pyrithiamin pyrophosphate and amp at 2.5 angstrom
15c1xrsB_



49.6 20
PDB header:isomerase
Chain: B: PDB Molecule:d-lysine 5,6-aminomutase beta subunit;
PDBTitle: crystal structure of lysine 5,6-aminomutase in complex with plp,2 cobalamin, and 5'-deoxyadenosine
16d2bcqa3



49.4 13
Fold:Nucleotidyltransferase
Superfamily:Nucleotidyltransferase
Family:DNA polymerase beta-like
17c4q6tA_



49.1 12
PDB header:hydrolase
Chain: A: PDB Molecule:glycosyl hydrolase, family 18;
PDBTitle: the crystal structure of a class v chitininase from pseudomonas2 fluorescens pf-5
18c2hroA_



47.5 15
PDB header:transferase
Chain: A: PDB Molecule:phosphoenolpyruvate-protein phosphotransferase;
PDBTitle: structure of the full-lenght enzyme i of the pts system from2 staphylococcus carnosus
19c3k35D_



45.9 29
PDB header:hydrolase
Chain: D: PDB Molecule:nad-dependent deacetylase sirtuin-6;
PDBTitle: crystal structure of human sirt6
20c2qm3A_



44.8 23
PDB header:transferase
Chain: A: PDB Molecule:predicted methyltransferase;
PDBTitle: crystal structure of a predicted methyltransferase from pyrococcus2 furiosus
21c6q52A_



not modelled 44.8 26
PDB header:rna binding protein
Chain: A: PDB Molecule:cca-adding enzyme;
PDBTitle: structure of a psychrophilic cca-adding enzyme in complex with cmpcpp2 at room temperature in chipx microfluidic device
22c1hlvA_



not modelled 41.5 23
PDB header:dna binding protein/dna
Chain: A: PDB Molecule:major centromere autoantigen b;
PDBTitle: crystal structure of cenp-b(1-129) complexed with the cenp-2 b box dna
23c4x4wB_



not modelled 41.3 21
PDB header:rna binding protein
Chain: B: PDB Molecule:cca trna nucleotidyltransferase 1, mitochondrial;
PDBTitle: crystal structure of the full-length human mitochondrial cca-adding2 enzyme
24d2b4va2



not modelled 41.2 15
Fold:Nucleotidyltransferase
Superfamily:Nucleotidyltransferase
Family:RNA editing terminal uridyl transferase 2, RET2, catalytic domain
25c5d50I_



not modelled 39.9 21
PDB header:dna binding protein
Chain: I: PDB Molecule:repressor;
PDBTitle: crystal structure of rep-ant complex from salmonella-temperate phage
26d7reqa2



not modelled 39.2 10
Fold:Flavodoxin-like
Superfamily:Cobalamin (vitamin B12)-binding domain
Family:Cobalamin (vitamin B12)-binding domain
27c6j27D_



not modelled 37.2 15
PDB header:transferase
Chain: D: PDB Molecule:n(4)-bis(aminopropyl)spermidine synthase;
PDBTitle: crystal structure of the branched-chain polyamine synthase from2 thermus thermophilus (tth-bpsa) in complex with n4-3 aminopropylspermidine and 5'-methylthioadenosine
28c1ou5A_



not modelled 36.6 21
PDB header:translation, transferase
Chain: A: PDB Molecule:trna cca-adding enzyme;
PDBTitle: crystal structure of human cca-adding enzyme
29d1vfga2



not modelled 36.3 13
Fold:Nucleotidyltransferase
Superfamily:Nucleotidyltransferase
Family:Poly A polymerase head domain-like
30c3e0bA_



not modelled 36.2 24
PDB header:oxidoreductase
Chain: A: PDB Molecule:dihydrofolate reductase;
PDBTitle: bacillus anthracis dihydrofolate reductase complexed with nadph and 2,2 4-diamino-5-(3-(2,5-dimethoxyphenyl)prop-1-ynyl)-6-ethylpyrimidine3 (ucp120b)
31d1wvfa2



not modelled 36.0 20
Fold:FAD-binding/transporter-associated domain-like
Superfamily:FAD-binding/transporter-associated domain-like
Family:FAD-linked oxidases, N-terminal domain
32c6gioB_



not modelled 35.5 14
PDB header:isomerase
Chain: B: PDB Molecule:amino acid amide racemase;
PDBTitle: structure of amino acid amide racemase from ochrobactrum anthropi
33c2hh9A_



not modelled 34.1 12
PDB header:transferase
Chain: A: PDB Molecule:thiamin pyrophosphokinase;
PDBTitle: thiamin pyrophosphokinase from candida albicans
34c3pkiF_



not modelled 34.0 29
PDB header:hydrolase
Chain: F: PDB Molecule:nad-dependent deacetylase sirtuin-6;
PDBTitle: human sirt6 crystal structure in complex with adp ribose
35c1z7dE_



not modelled 33.5 10
PDB header:transferase
Chain: E: PDB Molecule:ornithine aminotransferase;
PDBTitle: ornithine aminotransferase py00104 from plasmodium yoelii
36d1rxwa1



not modelled 32.8 44
Fold:SAM domain-like
Superfamily:5' to 3' exonuclease, C-terminal subdomain
Family:5' to 3' exonuclease, C-terminal subdomain
37c3vcoA_



not modelled 32.5 23
PDB header:oxidoreductase
Chain: A: PDB Molecule:dihydrofolate reductase;
PDBTitle: schistosoma mansoni dihydrofolate reductase
38c3aqnA_



not modelled 31.6 15
PDB header:transferase
Chain: A: PDB Molecule:poly(a) polymerase;
PDBTitle: complex structure of bacterial protein (apo form ii)
39d1p9qc1



not modelled 30.9 21
Fold:RuvA C-terminal domain-like
Superfamily:Hypothetical protein AF0491, middle domain
Family:Hypothetical protein AF0491, middle domain
40c3c7tB_



not modelled 29.9 29
PDB header:hydrolase
Chain: B: PDB Molecule:ecdysteroid-phosphate phosphatase;
PDBTitle: crystal structure of the ecdysone phosphate phosphatase, eppase, from2 bombix mori in complex with tungstate
41d1jmsa4



not modelled 29.8 22
Fold:Nucleotidyltransferase
Superfamily:Nucleotidyltransferase
Family:DNA polymerase beta-like
42c5lhaC_



not modelled 29.2 23
PDB header:transferase
Chain: C: PDB Molecule:omega transaminase;
PDBTitle: amine transaminase crystal structure from an uncultivated pseudomonas2 species in the pmp-bound form
43c1sz1A_



not modelled 29.2 19
PDB header:transferase/rna
Chain: A: PDB Molecule:trna nucleotidyltransferase;
PDBTitle: mechanism of cca-adding enzymes specificity revealed by crystal2 structures of ternary complexes
44d1knya2



not modelled 28.7 17
Fold:Nucleotidyltransferase
Superfamily:Nucleotidyltransferase
Family:Kanamycin nucleotidyltransferase (KNTase), N-terminal domain
45c2e1mA_



not modelled 27.2 67
PDB header:oxidoreductase
Chain: A: PDB Molecule:l-glutamate oxidase;
PDBTitle: crystal structure of l-glutamate oxidase from streptomyces sp. x-119-6
46d1xrsb1



not modelled 26.9 21
Fold:Flavodoxin-like
Superfamily:Cobalamin (vitamin B12)-binding domain
Family:Cobalamin (vitamin B12)-binding domain
47c4a0rB_



not modelled 26.8 22
PDB header:transferase
Chain: B: PDB Molecule:adenosylmethionine-8-amino-7-oxononanoate
PDBTitle: structure of bifunctional dapa aminotransferase-dtb synthetase from2 arabidopsis thaliana bound to dethiobiotin (dtb).
48c3wfsC_



not modelled 26.5 19
PDB header:transferase/rna
Chain: C: PDB Molecule:poly a polymerase;
PDBTitle: trna processing enzyme complex 3
49c3jtwB_



not modelled 26.1 15
PDB header:oxidoreductase
Chain: B: PDB Molecule:dihydrofolate reductase;
PDBTitle: crystal structure of putative dihydrofolate reductase (yp_805003.1)2 from pediococcus pentosaceus atcc 25745 at 1.90 a resolution
50c3wfqE_



not modelled 26.0 21
PDB header:transferase/rna
Chain: E: PDB Molecule:poly a polymerase;
PDBTitle: trna processing enzyme complex 1
51c3imlB_



not modelled 25.9 20
PDB header:transferase
Chain: B: PDB Molecule:s-adenosylmethionine synthetase;
PDBTitle: crystal structure of s-adenosylmethionine synthetase from burkholderia2 pseudomallei
52d1mxaa2



not modelled 25.6 18
Fold:S-adenosylmethionine synthetase
Superfamily:S-adenosylmethionine synthetase
Family:S-adenosylmethionine synthetase
53c2ze5A_



not modelled 25.6 13
PDB header:transferase
Chain: A: PDB Molecule:isopentenyl transferase;
PDBTitle: crystal structure of adenosine phosphate-isopentenyltransferase
54c2pb2B_



not modelled 25.3 12
PDB header:transferase
Chain: B: PDB Molecule:acetylornithine/succinyldiaminopimelate aminotransferase;
PDBTitle: structure of biosynthetic n-acetylornithine aminotransferase from2 salmonella typhimurium: studies on substrate specificity and3 inhibitor binding
55c3wfrF_



not modelled 25.3 29
PDB header:transferase/rna
Chain: F: PDB Molecule:poly a polymerase;
PDBTitle: trna processing enzyme complex 2
56d3dfra_



not modelled 25.1 25
Fold:Dihydrofolate reductase-like
Superfamily:Dihydrofolate reductase-like
Family:Dihydrofolate reductases
57c3d4iD_



not modelled 24.9 35
PDB header:hydrolase
Chain: D: PDB Molecule:sts-2 protein;
PDBTitle: crystal structure of the 2h-phosphatase domain of sts-2
58c1qysA_



not modelled 24.4 25
PDB header:de novo protein
Chain: A: PDB Molecule:top7;
PDBTitle: crystal structure of top7: a computationally designed2 protein with a novel fold
59c3wfrE_



not modelled 24.4 25
PDB header:transferase/rna
Chain: E: PDB Molecule:poly a polymerase;
PDBTitle: trna processing enzyme complex 2
60d1a77a1



not modelled 24.1 19
Fold:SAM domain-like
Superfamily:5' to 3' exonuclease, C-terminal subdomain
Family:5' to 3' exonuclease, C-terminal subdomain
61c2w8wA_



not modelled 24.0 10
PDB header:transferase
Chain: A: PDB Molecule:serine palmitoyltransferase;
PDBTitle: n100y spt with plp-ser
62c2hwgA_



not modelled 23.9 13
PDB header:transferase
Chain: A: PDB Molecule:phosphoenolpyruvate-protein phosphotransferase;
PDBTitle: structure of phosphorylated enzyme i of the phosphoenolpyruvate:sugar2 phosphotransferase system
63c2rdsA_



not modelled 23.6 14
PDB header:oxidoreductase
Chain: A: PDB Molecule:1-deoxypentalenic acid 11-beta hydroxylase; fe(ii)/alpha-
PDBTitle: crystal structure of ptlh with fe/oxalylglycine and ent-1-2 deoxypentalenic acid bound
64c3ia5A_



not modelled 23.4 30
PDB header:oxidoreductase
Chain: A: PDB Molecule:dihydrofolate reductase;
PDBTitle: moritella profunda dihydrofolate reductase (dhfr)
65c3wfqH_



not modelled 23.4 19
PDB header:transferase/rna
Chain: H: PDB Molecule:poly a polymerase;
PDBTitle: trna processing enzyme complex 1
66c3w6kC_



not modelled 23.4 19
PDB header:cell cycle
Chain: C: PDB Molecule:scpb;
PDBTitle: crystal structure of dimer of scpb n-terminal domain complexed with2 scpa peptide
67c3wfoB_



not modelled 23.3 28
PDB header:transferase
Chain: B: PDB Molecule:poly a polymerase;
PDBTitle: trna processing enzyme (apo form 1)
68c3wfpA_



not modelled 23.1 21
PDB header:transferase
Chain: A: PDB Molecule:poly a polymerase;
PDBTitle: trna processing enzyme (apo form 2)
69d1ig0a2



not modelled 22.8 21
Fold:Thiamin pyrophosphokinase, catalytic domain
Superfamily:Thiamin pyrophosphokinase, catalytic domain
Family:Thiamin pyrophosphokinase, catalytic domain
70c3i5tB_



not modelled 22.5 17
PDB header:transferase
Chain: B: PDB Molecule:aminotransferase;
PDBTitle: crystal structure of aminotransferase prk07036 from rhodobacter2 sphaeroides kd131
71c4iw7A_



not modelled 22.2 10
PDB header:transferase
Chain: A: PDB Molecule:8-amino-7-oxononanoate synthase;
PDBTitle: crystal structure of 8-amino-7-oxononanoate synthase (biof) from2 francisella tularensis.
72c3dxvA_



not modelled 22.1 11
PDB header:isomerase
Chain: A: PDB Molecule:alpha-amino-epsilon-caprolactam racemase;
PDBTitle: the crystal structure of alpha-amino-epsilon-caprolactam racemase from2 achromobacter obae
73d1wota_



not modelled 21.9 21
Fold:Nucleotidyltransferase
Superfamily:Nucleotidyltransferase
Family:Catalytic subunit of bi-partite nucleotidyltransferase
74c3cseA_



not modelled 21.6 26
PDB header:oxidoreductase
Chain: A: PDB Molecule:dihydrofolate reductase;
PDBTitle: candida glabrata dihydrofolate reductase complexed with nadph and 2,4-2 diamino-5-(3-(2,5-dimethoxyphenyl)prop-1-ynyl)-6-ethylpyrimidine3 (ucp120b)
75c3hjeA_



not modelled 21.3 17
PDB header:transferase
Chain: A: PDB Molecule:704aa long hypothetical glycosyltransferase;
PDBTitle: crystal structure of sulfolobus tokodaii hypothetical maltooligosyl2 trehalose synthase
76c2jvfA_



not modelled 21.3 40
PDB header:de novo protein
Chain: A: PDB Molecule:de novo protein m7;
PDBTitle: solution structure of m7, a computationally-designed2 artificial protein
77d1ohea2



not modelled 21.0 22
Fold:(Phosphotyrosine protein) phosphatases II
Superfamily:(Phosphotyrosine protein) phosphatases II
Family:Dual specificity phosphatase-like
78c3tq8A_



not modelled 20.9 26
PDB header:oxidoreductase/oxidoreductase inhibitor
Chain: A: PDB Molecule:dihydrofolate reductase;
PDBTitle: structure of the dihydrofolate reductase (fola) from coxiella burnetii2 in complex with trimethoprim
79c1vfgB_



not modelled 20.5 13
PDB header:transferase/rna
Chain: B: PDB Molecule:poly a polymerase;
PDBTitle: crystal structure of trna nucleotidyltransferase complexed2 with a primer trna and an incoming atp analog
80c3vmmA_



not modelled 20.5 12
PDB header:ligase
Chain: A: PDB Molecule:alanine-anticapsin ligase bacd;
PDBTitle: crystal structure of bacd, an l-amino acid dipeptide ligase from2 bacillus subtilis
81c1ig0A_



not modelled 20.5 21
PDB header:transferase
Chain: A: PDB Molecule:thiamin pyrophosphokinase;
PDBTitle: crystal structure of yeast thiamin pyrophosphokinase
82c4q2uM_



not modelled 19.9 21
PDB header:toxin/toxin repressor
Chain: M: PDB Molecule:antitoxin dinj;
PDBTitle: crystal structure of the e. coli dinj-yafq toxin-antitoxin complex
83c2ihmA_



not modelled 19.1 11
PDB header:transferase/dna
Chain: A: PDB Molecule:dna polymerase mu;
PDBTitle: polymerase mu in ternary complex with gapped 11mer dna duplex and2 bound incoming nucleotide
84d8dfra_



not modelled 19.0 21
Fold:Dihydrofolate reductase-like
Superfamily:Dihydrofolate reductase-like
Family:Dihydrofolate reductases
85c2bg5C_



not modelled 18.8 14
PDB header:transferase
Chain: C: PDB Molecule:phosphoenolpyruvate-protein kinase;
PDBTitle: crystal structure of the phosphoenolpyruvate-binding enzyme i-domain2 from the thermoanaerobacter tengcongensis pep: sugar3 phosphotransferase system (pts)
86d2fmpa3



not modelled 18.8 11
Fold:Nucleotidyltransferase
Superfamily:Nucleotidyltransferase
Family:DNA polymerase beta-like
87d1fmfa_



not modelled 18.5 20
Fold:Flavodoxin-like
Superfamily:Cobalamin (vitamin B12)-binding domain
Family:Cobalamin (vitamin B12)-binding domain
88c4s3nA_



not modelled 18.5 26
PDB header:transferase/rna
Chain: A: PDB Molecule:2'-5'-oligoadenylate synthase 3;
PDBTitle: crystal structure of human oas3 domain i in complex with dsrna
89c3fcrA_



not modelled 18.3 12
PDB header:transferase
Chain: A: PDB Molecule:putative aminotransferase;
PDBTitle: crystal structure of putative aminotransferase (yp_614685.1) from2 silicibacter sp. tm1040 at 1.80 a resolution
90c3wfsD_



not modelled 18.1 15
PDB header:transferase/rna
Chain: D: PDB Molecule:poly a polymerase;
PDBTitle: trna processing enzyme complex 3
91d1e8ga2



not modelled 17.6 10
Fold:FAD-binding/transporter-associated domain-like
Superfamily:FAD-binding/transporter-associated domain-like
Family:FAD-linked oxidases, N-terminal domain
92c3wfqG_



not modelled 17.6 21
PDB header:transferase/rna
Chain: G: PDB Molecule:poly a polymerase;
PDBTitle: trna processing enzyme complex 1
93c3nybA_



not modelled 17.4 14
PDB header:transferase/rna binding protein
Chain: A: PDB Molecule:poly(a) rna polymerase protein 2;
PDBTitle: structure and function of the polymerase core of tramp, a rna2 surveillance complex
94c4ky3A_



not modelled 17.2 25
PDB header:de novo protein
Chain: A: PDB Molecule:designed protein or327;
PDBTitle: three-dimensional structure of the orthorhombic crystal of2 computationally designed insertion domain , northeast structural3 genomics consortium (nesg) target or327
95c1zdrB_



not modelled 17.2 23
PDB header:oxidoreductase
Chain: B: PDB Molecule:dihydrofolate reductase;
PDBTitle: dhfr from bacillus stearothermophilus
96c2jerG_



not modelled 17.1 22
PDB header:hydrolase
Chain: G: PDB Molecule:agmatine deiminase;
PDBTitle: agmatine deiminase of enterococcus faecalis catalyzing its2 reaction.
97c1rg9D_



not modelled 17.0 14
PDB header:transferase
Chain: D: PDB Molecule:s-adenosylmethionine synthetase;
PDBTitle: s-adenosylmethionine synthetase complexed with sam and ppnp
98c3c37B_



not modelled 17.0 16
PDB header:hydrolase
Chain: B: PDB Molecule:peptidase, m48 family;
PDBTitle: x-ray structure of the putative zn-dependent peptidase q74d82 at the2 resolution 1.7 a. northeast structural genomics consortium target3 gsr143a
99c4atpD_



not modelled 17.0 16
PDB header:transferase
Chain: D: PDB Molecule:4-aminobutyrate transaminase;
PDBTitle: structure of gaba-transaminase a1r958 from arthrobacter aurescens in2 complex with plp

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