Phyre Home Retrieve Phyre Job Id
Emailmdejesus@rockefeller.edu
DescriptionRVBD3090_(-)_3458208_3459095
DateThu Aug 8 16:20:26 BST 2019
Unique Job ID0114e835cd032220
SequenceMTWQIVFVVI ... Download FASTA
Job Typenormal
Job Expiry

Summary 

Top model
Image coloured by rainbow N → C terminus
Model dimensions (Å):X:46.266 Y:56.777 Z:97.839
Model (left) based on template c3bk6C_
Top template information
PDB header:membrane protein
Chain: C: PDB Molecule:ph stomatin;
PDBTitle: crystal structure of a core domain of stomatin from2 pyrococcus horikoshii
Confidence and coverage
Confidence: 99.9% Coverage: 54%
160 residues ( 54% of your sequence) have been modelled with 99.9% confidence by the single highest scoring template.
Additional confident templates have been detected (see Domain analysis) which cover other regions of your sequence.
219 residues ( 74%) could be modelled at >90% confidence using multiple-templates.
You may wish to try resubmitting your sequence in "intensive" mode to model more of your sequence.
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Sequence analysis 

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Secondary structure and disorder prediction [Show] 

Domain analysis [Show] 

Detailed template information [Hide] 

 

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Template Alignment Coverage3D Model Confidence
% i.d. Template Information
1c3bk6C_
99.9 8
PDB header:membrane protein
Chain: C: PDB Molecule:ph stomatin;
PDBTitle: crystal structure of a core domain of stomatin from2 pyrococcus horikoshii
2d1wina_
99.7 8
Fold:EF-Ts domain-like
Superfamily:Band 7/SPFH domain
Family:Band 7/SPFH domain
3c4fvjB_
99.7 9
PDB header:membrane protein
Chain: B: PDB Molecule:stomatin;
PDBTitle: spfh domain of the mouse stomatin (crystal form 2)
4c2rpbA_
99.6 13
PDB header:membrane protein
Chain: A: PDB Molecule:hypothetical membrane protein;
PDBTitle: the solution structure of membrane protein
5c2zv4O_
97.7 12
PDB header:structural protein
Chain: O: PDB Molecule:major vault protein;
PDBTitle: the structure of rat liver vault at 3.5 angstrom resolution
6c2qzvB_
95.5 13
PDB header:structural protein
Chain: B: PDB Molecule:major vault protein;
PDBTitle: draft crystal structure of the vault shell at 9 angstroms2 resolution
7c2kk7A_
79.0 21
PDB header:hydrolase
Chain: A: PDB Molecule:v-type atp synthase subunit e;
PDBTitle: nmr solution structure of the n terminal domain of subunit e2 (e1-52) of a1ao atp synthase from methanocaldococcus3 jannaschii
8c3k5bB_
37.8 12
PDB header:hydrolase
Chain: B: PDB Molecule:v-type atp synthase, subunit (vapc-therm);
PDBTitle: crystal structure of the peripheral stalk of thermus thermophilus h+-2 atpase/synthase
9c6ahqM_
34.7 13
PDB header:motor protein
Chain: M: PDB Molecule:flagellar protein flil;
PDBTitle: structure of the 40-167 fragment of flil
10c2k6iA_
25.3 21
PDB header:structural protein
Chain: A: PDB Molecule:uncharacterized protein mj0223;
PDBTitle: the domain features of the peripheral stalk subunit h of the2 methanogenic a1ao atp synthase and the nmr solution3 structure of h1-47
11d1nkta1
24.0 37
Fold:Pre-protein crosslinking domain of SecA
Superfamily:Pre-protein crosslinking domain of SecA
Family:Pre-protein crosslinking domain of SecA
12d1tf5a1
21.8 33
Fold:Pre-protein crosslinking domain of SecA
Superfamily:Pre-protein crosslinking domain of SecA
Family:Pre-protein crosslinking domain of SecA
13c3wvfA_
19.8 19
PDB header:chaperone
Chain: A: PDB Molecule:membrane protein insertase yidc;
PDBTitle: crystal structure of yidc from escherichia coli
14d2diga1
19.5 54
Fold:SH3-like barrel
Superfamily:Tudor/PWWP/MBT
Family:Tudor domain
15c3k5bE_
18.7 16
PDB header:hydrolase
Chain: E: PDB Molecule:v-type atp synthase subunit e;
PDBTitle: crystal structure of the peripheral stalk of thermus thermophilus h+-2 atpase/synthase
16c6mctC_
17.9 26
PDB header:de novo protein
Chain: C: PDB Molecule:mini-evgl membrane protein;
PDBTitle: a designed pentameric membrane protein stabilized by van der waals2 interaction
17c6mctL_
17.9 26
PDB header:de novo protein
Chain: L: PDB Molecule:mini-evgl membrane protein;
PDBTitle: a designed pentameric membrane protein stabilized by van der waals2 interaction
18c6mctJ_
17.9 26
PDB header:de novo protein
Chain: J: PDB Molecule:mini-evgl membrane protein;
PDBTitle: a designed pentameric membrane protein stabilized by van der waals2 interaction
19c6mctF_
17.9 26
PDB header:de novo protein
Chain: F: PDB Molecule:mini-evgl membrane protein;
PDBTitle: a designed pentameric membrane protein stabilized by van der waals2 interaction
20c6mq2D_
17.9 26
PDB header:de novo protein
Chain: D: PDB Molecule:mini-evgl membrane protein;
PDBTitle: de novo design of membrane protein--mini-evgl membrane protein, c22212 form-2
21c6mctO_
not modelled 17.9 26
PDB header:de novo protein
Chain: O: PDB Molecule:mini-evgl membrane protein;
PDBTitle: a designed pentameric membrane protein stabilized by van der waals2 interaction
22c6mctE_
not modelled 17.9 26
PDB header:de novo protein
Chain: E: PDB Molecule:mini-evgl membrane protein;
PDBTitle: a designed pentameric membrane protein stabilized by van der waals2 interaction
23c6mpwA_
not modelled 17.9 26
PDB header:de novo protein
Chain: A: PDB Molecule:mini-evgl membrane protein;
PDBTitle: de novo design of membrane protein--mini-evgl membrane protein, c22212 form-1
24c6mctG_
not modelled 17.9 26
PDB header:de novo protein
Chain: G: PDB Molecule:mini-evgl membrane protein;
PDBTitle: a designed pentameric membrane protein stabilized by van der waals2 interaction
25c6mctA_
not modelled 17.9 26
PDB header:de novo protein
Chain: A: PDB Molecule:mini-evgl membrane protein;
PDBTitle: a designed pentameric membrane protein stabilized by van der waals2 interaction
26c6mctI_
not modelled 17.9 26
PDB header:de novo protein
Chain: I: PDB Molecule:mini-evgl membrane protein;
PDBTitle: a designed pentameric membrane protein stabilized by van der waals2 interaction
27c6mctH_
not modelled 17.9 26
PDB header:de novo protein
Chain: H: PDB Molecule:mini-evgl membrane protein;
PDBTitle: a designed pentameric membrane protein stabilized by van der waals2 interaction
28c6mctK_
not modelled 17.9 26
PDB header:de novo protein
Chain: K: PDB Molecule:mini-evgl membrane protein;
PDBTitle: a designed pentameric membrane protein stabilized by van der waals2 interaction
29c6mctB_
not modelled 17.9 26
PDB header:de novo protein
Chain: B: PDB Molecule:mini-evgl membrane protein;
PDBTitle: a designed pentameric membrane protein stabilized by van der waals2 interaction
30c6mctM_
not modelled 17.9 26
PDB header:de novo protein
Chain: M: PDB Molecule:mini-evgl membrane protein;
PDBTitle: a designed pentameric membrane protein stabilized by van der waals2 interaction
31c6mctN_
not modelled 17.9 26
PDB header:de novo protein
Chain: N: PDB Molecule:mini-evgl membrane protein;
PDBTitle: a designed pentameric membrane protein stabilized by van der waals2 interaction
32c6mctD_
not modelled 17.9 26
PDB header:de novo protein
Chain: D: PDB Molecule:mini-evgl membrane protein;
PDBTitle: a designed pentameric membrane protein stabilized by van der waals2 interaction
33c6mpwD_
not modelled 17.3 26
PDB header:de novo protein
Chain: D: PDB Molecule:mini-evgl membrane protein;
PDBTitle: de novo design of membrane protein--mini-evgl membrane protein, c22212 form-1
34c6mq2B_
not modelled 17.3 26
PDB header:de novo protein
Chain: B: PDB Molecule:mini-evgl membrane protein;
PDBTitle: de novo design of membrane protein--mini-evgl membrane protein, c22212 form-2
35c6mpwB_
not modelled 17.3 26
PDB header:de novo protein
Chain: B: PDB Molecule:mini-evgl membrane protein;
PDBTitle: de novo design of membrane protein--mini-evgl membrane protein, c22212 form-1
36c6mpwC_
not modelled 17.3 26
PDB header:de novo protein
Chain: C: PDB Molecule:mini-evgl membrane protein;
PDBTitle: de novo design of membrane protein--mini-evgl membrane protein, c22212 form-1
37c6mq2E_
not modelled 17.3 26
PDB header:de novo protein
Chain: E: PDB Molecule:mini-evgl membrane protein;
PDBTitle: de novo design of membrane protein--mini-evgl membrane protein, c22212 form-2
38c6mq2A_
not modelled 17.3 26
PDB header:de novo protein
Chain: A: PDB Molecule:mini-evgl membrane protein;
PDBTitle: de novo design of membrane protein--mini-evgl membrane protein, c22212 form-2
39c6mq2C_
not modelled 17.3 26
PDB header:de novo protein
Chain: C: PDB Molecule:mini-evgl membrane protein;
PDBTitle: de novo design of membrane protein--mini-evgl membrane protein, c22212 form-2
40c6mpwE_
not modelled 17.3 26
PDB header:de novo protein
Chain: E: PDB Molecule:mini-evgl membrane protein;
PDBTitle: de novo design of membrane protein--mini-evgl membrane protein, c22212 form-1
41c4tt1A_
not modelled 14.9 9
PDB header:hydrolase
Chain: A: PDB Molecule:deneddylase;
PDBTitle: crystal structure of fragment 1600-1733 of hsv1 ul36, native
42c4pj0l_
not modelled 14.6 3
PDB header:oxidoreductase, electron transport
Chain: L: PDB Molecule:photosystem ii reaction center protein l;
PDBTitle: structure of t.elongatus photosystem ii, rows of dimers crystal2 packing
43c4pj0L_
not modelled 14.6 3
PDB header:oxidoreductase, electron transport
Chain: L: PDB Molecule:photosystem ii reaction center protein l;
PDBTitle: structure of t.elongatus photosystem ii, rows of dimers crystal2 packing
44c4tnhL_
not modelled 14.5 3
PDB header:electron transport,photosynthesis
Chain: L: PDB Molecule:photosystem ii reaction center protein l;
PDBTitle: rt xfel structure of photosystem ii in the dark state at 4.9 a2 resolution
45c4tnjl_
not modelled 14.5 3
PDB header:electron transport,photosynthesis
Chain: L: PDB Molecule:photosystem ii reaction center protein l;
PDBTitle: rt xfel structure of photosystem ii 500 ms after the 2nd illumination2 (2f) at 4.5 a resolution
46c3wu2l_
not modelled 14.5 3
PDB header:electron transport, photosynthesis
Chain: L: PDB Molecule:photosystem ii reaction center protein l;
PDBTitle: crystal structure analysis of photosystem ii complex
47c4fbyd_
not modelled 14.5 3
PDB header:photosynthesis
Chain: D: PDB Molecule:photosystem ii d2 protein;
PDBTitle: fs x-ray diffraction of photosystem ii
48c4tniL_
not modelled 14.5 3
PDB header:electron transport,photosynthesis
Chain: L: PDB Molecule:photosystem ii reaction center protein l;
PDBTitle: rt xfel structure of photosystem ii 500 ms after the third2 illumination at 4.6 a resolution
49c4fbyL_
not modelled 14.5 3
PDB header:photosynthesis
Chain: L: PDB Molecule:photosystem ii reaction center protein l;
PDBTitle: fs x-ray diffraction of photosystem ii
50c3bz2L_
not modelled 14.5 3
PDB header:electron transport
Chain: L: PDB Molecule:photosystem ii reaction center protein l;
PDBTitle: crystal structure of cyanobacterial photosystem ii (part 2 of 2). this2 file contains second monomer of psii dimer
51c1s5ll_
not modelled 14.5 3
PDB header:photosynthesis
Chain: L: PDB Molecule:photosystem ii reaction center l protein;
PDBTitle: architecture of the photosynthetic oxygen evolving center
52c4tnjL_
not modelled 14.5 3
PDB header:electron transport,photosynthesis
Chain: L: PDB Molecule:photosystem ii reaction center protein l;
PDBTitle: rt xfel structure of photosystem ii 500 ms after the 2nd illumination2 (2f) at 4.5 a resolution
53c4tnhl_
not modelled 14.5 3
PDB header:electron transport,photosynthesis
Chain: L: PDB Molecule:photosystem ii reaction center protein l;
PDBTitle: rt xfel structure of photosystem ii in the dark state at 4.9 a2 resolution
54c4tnil_
not modelled 14.5 3
PDB header:electron transport,photosynthesis
Chain: L: PDB Molecule:photosystem ii reaction center protein l;
PDBTitle: rt xfel structure of photosystem ii 500 ms after the third2 illumination at 4.6 a resolution
55c4ub8L_
not modelled 14.5 3
PDB header:electron transport, photosynthesis
Chain: L: PDB Molecule:photosystem ii reaction center protein l;
PDBTitle: native structure of photosystem ii (dataset-2) by a femtosecond x-ray2 laser
56c4ub6l_
not modelled 14.5 3
PDB header:electron transport, photosynthesis
Chain: L: PDB Molecule:photosystem ii reaction center protein l;
PDBTitle: native structure of photosystem ii (dataset-1) by a femtosecond x-ray2 laser
57c4tnkl_
not modelled 14.5 3
PDB header:electron transport,photosynthesis
Chain: L: PDB Molecule:photosystem ii reaction center protein l;
PDBTitle: rt xfel structure of photosystem ii 250 microsec after the third2 illumination at 5.2 a resolution
58c2axtl_
not modelled 14.5 3
PDB header:electron transport
Chain: L: PDB Molecule:photosystem ii reaction center l protein;
PDBTitle: crystal structure of photosystem ii from thermosynechococcus elongatus
59c4tnkL_
not modelled 14.5 3
PDB header:electron transport,photosynthesis
Chain: L: PDB Molecule:photosystem ii reaction center protein l;
PDBTitle: rt xfel structure of photosystem ii 250 microsec after the third2 illumination at 5.2 a resolution
60c3wu2L_
not modelled 14.5 3
PDB header:electron transport, photosynthesis
Chain: L: PDB Molecule:photosystem ii reaction center protein l;
PDBTitle: crystal structure analysis of photosystem ii complex
61c4ub6L_
not modelled 14.5 3
PDB header:electron transport, photosynthesis
Chain: L: PDB Molecule:photosystem ii reaction center protein l;
PDBTitle: native structure of photosystem ii (dataset-1) by a femtosecond x-ray2 laser
62c4ub8l_
not modelled 14.5 3
PDB header:electron transport, photosynthesis
Chain: L: PDB Molecule:photosystem ii reaction center protein l;
PDBTitle: native structure of photosystem ii (dataset-2) by a femtosecond x-ray2 laser
63c1s5lL_
not modelled 14.5 3
PDB header:photosynthesis
Chain: L: PDB Molecule:photosystem ii reaction center l protein;
PDBTitle: architecture of the photosynthetic oxygen evolving center
64c3prqL_
not modelled 14.5 3
PDB header:photosynthesis
Chain: L: PDB Molecule:photosystem ii reaction center protein l;
PDBTitle: crystal structure of cyanobacterial photosystem ii in complex with2 terbutryn (part 1 of 2). this file contains first monomer of psii3 dimer
65c3bz1L_
not modelled 14.5 3
PDB header:electron transport
Chain: L: PDB Molecule:photosystem ii reaction center protein l;
PDBTitle: crystal structure of cyanobacterial photosystem ii (part 1 of 2). this2 file contains first monomer of psii dimer
66c3kziL_
not modelled 14.5 3
PDB header:electron transport
Chain: L: PDB Molecule:photosystem ii reaction center protein l;
PDBTitle: crystal structure of monomeric form of cyanobacterial photosystem ii
67c2axtL_
not modelled 14.5 3
PDB header:electron transport
Chain: L: PDB Molecule:photosystem ii reaction center l protein;
PDBTitle: crystal structure of photosystem ii from thermosynechococcus elongatus
68d2axtl1
not modelled 14.5 3
Fold:Single transmembrane helix
Superfamily:Photosystem II reaction center protein L, PsbL
Family:PsbL-like
69c3arcL_
not modelled 14.5 3
PDB header:electron transport, photosynthesis
Chain: L: PDB Molecule:photosystem ii reaction center protein l;
PDBTitle: crystal structure of oxygen-evolving photosystem ii at 1.9 angstrom2 resolution
70c3a0bl_
not modelled 14.5 3
PDB header:electron transport
Chain: L: PDB Molecule:photosystem ii reaction center protein l;
PDBTitle: crystal structure of br-substituted photosystem ii complex
71c4rvyL_
not modelled 14.5 3
PDB header:oxidoreductase
Chain: L: PDB Molecule:photosystem ii reaction center protein l;
PDBTitle: serial time resolved crystallography of photosystem ii using a2 femtosecond x-ray laser. the s state after two flashes (s3)
72c3prrL_
not modelled 14.5 3
PDB header:photosynthesis
Chain: L: PDB Molecule:photosystem ii reaction center protein l;
PDBTitle: crystal structure of cyanobacterial photosystem ii in complex with2 terbutryn (part 2 of 2). this file contains second monomer of psii3 dimer
73c5e7cl_
not modelled 14.5 3
PDB header:photosynthesis
Chain: L: PDB Molecule:photosystem ii reaction center protein l;
PDBTitle: macromolecular diffractive imaging using imperfect crystals - bragg2 data
74c4ixqL_
not modelled 14.5 3
PDB header:photosynthesis
Chain: L: PDB Molecule:photosystem ii reaction center protein l;
PDBTitle: rt fs x-ray diffraction of photosystem ii, dark state
75c4il6L_
not modelled 14.5 3
PDB header:electron transport
Chain: L: PDB Molecule:photosystem ii reaction center protein l;
PDBTitle: structure of sr-substituted photosystem ii
76c4ixrl_
not modelled 14.5 3
PDB header:photosynthesis
Chain: L: PDB Molecule:photosystem ii reaction center protein l;
PDBTitle: rt fs x-ray diffraction of photosystem ii, first illuminated state
77c4ixrL_
not modelled 14.5 3
PDB header:photosynthesis
Chain: L: PDB Molecule:photosystem ii reaction center protein l;
PDBTitle: rt fs x-ray diffraction of photosystem ii, first illuminated state
78c5e7cL_
not modelled 14.5 3
PDB header:photosynthesis
Chain: L: PDB Molecule:photosystem ii reaction center protein l;
PDBTitle: macromolecular diffractive imaging using imperfect crystals - bragg2 data
79c4il6l_
not modelled 14.5 3
PDB header:electron transport
Chain: L: PDB Molecule:photosystem ii reaction center protein l;
PDBTitle: structure of sr-substituted photosystem ii
80c4ixql_
not modelled 14.5 3
PDB header:photosynthesis
Chain: L: PDB Molecule:photosystem ii reaction center protein l;
PDBTitle: rt fs x-ray diffraction of photosystem ii, dark state
81c4rvyl_
not modelled 14.5 3
PDB header:oxidoreductase
Chain: L: PDB Molecule:photosystem ii reaction center protein l;
PDBTitle: serial time resolved crystallography of photosystem ii using a2 femtosecond x-ray laser. the s state after two flashes (s3)
82c3a0hl_
not modelled 14.5 3
PDB header:electron transport
Chain: L: PDB Molecule:photosystem ii reaction center protein l;
PDBTitle: crystal structure of i-substituted photosystem ii complex
83c3a0bL_
not modelled 14.5 3
PDB header:electron transport
Chain: L: PDB Molecule:photosystem ii reaction center protein l;
PDBTitle: crystal structure of br-substituted photosystem ii complex
84c3a0hL_
not modelled 14.5 3
PDB header:electron transport
Chain: L: PDB Molecule:photosystem ii reaction center protein l;
PDBTitle: crystal structure of i-substituted photosystem ii complex
85c4dl0J_
not modelled 11.2 8
PDB header:hydrolase
Chain: J: PDB Molecule:v-type proton atpase subunit e;
PDBTitle: crystal structure of the heterotrimeric egchead peripheral stalk2 complex of the yeast vacuolar atpase
86c5a8fA_
not modelled 10.9 14
PDB header:viral protein
Chain: A: PDB Molecule:human saffold virus-3 vp1;
PDBTitle: structure and genome release mechanism of human cardiovirus saffold2 virus-3
87c4or2A_
not modelled 10.7 8
PDB header:signaling protein
Chain: A: PDB Molecule:soluble cytochrome b562, metabotropic glutamate receptor 1;
PDBTitle: human class c g protein-coupled metabotropic glutamate receptor 1 in2 complex with a negative allosteric modulator
88c3arcl_
not modelled 10.5 3
PDB header:electron transport, photosynthesis
Chain: L: PDB Molecule:photosystem ii reaction center protein l;
PDBTitle: crystal structure of oxygen-evolving photosystem ii at 1.9 angstrom2 resolution
89c2jp3A_
not modelled 10.1 8
PDB header:transcription
Chain: A: PDB Molecule:fxyd domain-containing ion transport regulator 4;
PDBTitle: solution structure of the human fxyd4 (chif) protein in sds2 micelles
90c2jo1A_
not modelled 9.6 12
PDB header:hydrolase regulator
Chain: A: PDB Molecule:phospholemman;
PDBTitle: structure of the na,k-atpase regulatory protein fxyd1 in2 micelles
91c2digA_
not modelled 9.3 54
PDB header:dna binding protein
Chain: A: PDB Molecule:lamin-b receptor;
PDBTitle: solusion structure of the todor domain of human lamin-b2 receptor
92c2zxeG_
not modelled 8.9 27
PDB header:hydrolase/transport protein
Chain: G: PDB Molecule:phospholemman-like protein;
PDBTitle: crystal structure of the sodium - potassium pump in the e2.2k+.pi2 state
93c2mkvA_
not modelled 8.6 19
PDB header:transport protein
Chain: A: PDB Molecule:sodium/potassium-transporting atpase subunit gamma;
PDBTitle: structure of the na,k-atpase regulatory protein fxyd2b in micelles
94c4dl0G_
not modelled 8.5 26
PDB header:hydrolase
Chain: G: PDB Molecule:v-type proton atpase subunit g;
PDBTitle: crystal structure of the heterotrimeric egchead peripheral stalk2 complex of the yeast vacuolar atpase
95c1wd6B_
not modelled 8.4 38
PDB header:structural genomics, unknown function
Chain: B: PDB Molecule:protein ydhr;
PDBTitle: crystal structure of jw1657 from escherichia coli
96d1eg2a_
not modelled 8.2 22
Fold:S-adenosyl-L-methionine-dependent methyltransferases
Superfamily:S-adenosyl-L-methionine-dependent methyltransferases
Family:Type II DNA methylase
97c6nbxG_
not modelled 7.4 18
PDB header:oxidoreductase
Chain: G: PDB Molecule:nadh-quinone oxidoreductase subunit j;
PDBTitle: t.elongatus ndh (data-set 2)
98c6c6lO_
not modelled 7.3 15
PDB header:membrane protein
Chain: O: PDB Molecule:v-type proton atpase subunit f;
PDBTitle: yeast vacuolar atpase vo in lipid nanodisc
99c6n52B_
not modelled 7.0 12
PDB header:membrane protein
Chain: B: PDB Molecule:metabotropic glutamate receptor 5;
PDBTitle: metabotropic glutamate receptor 5 apo form

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Transmembrane helix prediction 

Transmembrane helices have been predicted in your sequence to adopt the topology shown below