Phyre Home Retrieve Phyre Job Id
Emailmdejesus@rockefeller.edu
DescriptionRVBD3092c_(-)_3460811_3461731
DateThu Aug 8 16:20:27 BST 2019
Unique Job IDb527800cb1fa019a
SequenceMSGGLFGLLD ... Download FASTA
Job Typenormal
Job Expiry

Summary 

Top model
Image coloured by rainbow N → C terminus
Model dimensions (Å):X:26.126 Y:29.018 Z:30.277
Model (left) based on template c5wwoB_
Top template information
PDB header:rna binding protein
Chain: B: PDB Molecule:essential nuclear protein 1;
PDBTitle: crystal structure of enp1
Confidence and coverage
Confidence: 40.8% Coverage: 20%
60 residues ( 20% of your sequence) have been modelled with 40.8% confidence by the single highest scoring template.
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3D viewing
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Sequence analysis 

Download FASTA version

Secondary structure and disorder prediction [Show] 

Domain analysis [Show] 

Detailed template information [Hide] 

 

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Template Alignment Coverage3D Model Confidence
% i.d. Template Information
1c5wwoB_



40.8 27
PDB header:rna binding protein
Chain: B: PDB Molecule:essential nuclear protein 1;
PDBTitle: crystal structure of enp1
2d2enda_



37.0 35
Fold:T4 endonuclease V
Superfamily:T4 endonuclease V
Family:T4 endonuclease V
3c2l9uB_



36.5 41
PDB header:membrane protein
Chain: B: PDB Molecule:receptor tyrosine-protein kinase erbb-3;
PDBTitle: spatial structure of dimeric erbb3 transmembrane domain
4c2l9uA_



36.5 41
PDB header:membrane protein
Chain: A: PDB Molecule:receptor tyrosine-protein kinase erbb-3;
PDBTitle: spatial structure of dimeric erbb3 transmembrane domain
5c4cv5D_



27.3 21
PDB header:cell cycle
Chain: D: PDB Molecule:protein caf40;
PDBTitle: yeast not1 cn9bd-caf40 complex
6c5doqC_



21.9 48
PDB header:oxidoreductase
Chain: C: PDB Molecule:putative membrane protein;
PDBTitle: the structure of bd oxidase from geobacillus thermodenitrificans
7c5ir6C_



21.9 48
PDB header:oxidoreductase
Chain: C: PDB Molecule:putative membrane protein;
PDBTitle: the structure of bd oxidase from geobacillus thermodenitrificans
8c5tvoB_



20.2 25
PDB header:lyase
Chain: B: PDB Molecule:s-adenosylmethionine decarboxylase proenzyme;
PDBTitle: crystal structure of trypanosoma brucei adometdc-delta26 monomer
9c5tvfC_



18.5 30
PDB header:lyase
Chain: C: PDB Molecule:s-adenosylmethionine decarboxylase beta chain;
PDBTitle: crystal structure of trypanosoma brucei adometdc/prozyme heterodimer2 in complex with inhibitor cgp 40215
10c2voyB_



16.5 22
PDB header:hydrolase
Chain: B: PDB Molecule:sarcoplasmic/endoplasmic reticulum calcium atpase 1;
PDBTitle: cryoem model of copa, the copper transporting atpase from2 archaeoglobus fulgidus
11c4r0cB_



16.4 17
PDB header:membrane protein
Chain: B: PDB Molecule:abgt putative transporter family;
PDBTitle: crystal structure of the alcanivorax borkumensis ydah transporter2 reveals an unusual topology
12d1nexa2



16.2 19
Fold:POZ domain
Superfamily:POZ domain
Family:BTB/POZ domain
13c4gl6B_



15.6 17
PDB header:structural genomics, unknown function
Chain: B: PDB Molecule:hypothetical protein;
PDBTitle: crystal structure of a duf5037 family protein (rumgna_01148) from2 ruminococcus gnavus atcc 29149 at 2.55 a resolution
14c1i7mD_



15.0 44
PDB header:lyase
Chain: D: PDB Molecule:s-adenosylmethionine decarboxylase beta chain;
PDBTitle: human s-adenosylmethionine decarboxylase with covalently bound2 pyruvoyl group and complexed with 4-amidinoindan-1-one-2'-3 amidinohydrazone
15c6g4ww_



14.0 24
PDB header:ribosome
Chain: W: PDB Molecule:40s ribosomal protein s15a;
PDBTitle: cryo-em structure of a late human pre-40s ribosomal subunit - state a
16c4zr0A_



13.5 27
PDB header:oxidoreductase
Chain: A: PDB Molecule:ceramide very long chain fatty acid hydroxylase scs7;
PDBTitle: full length scs7p (only hydroxylase domain visible)
17c1w8xP_



12.5 60
PDB header:virus
Chain: P: PDB Molecule:protein p16;
PDBTitle: structural analysis of prd1
18d2c9wc1



10.4 18
Fold:POZ domain
Superfamily:POZ domain
Family:BTB/POZ domain
19c5j6vA_



9.9 36
PDB header:antimicrobial protein
Chain: A: PDB Molecule:hylin-d;
PDBTitle: nmr structures of hylin-a1 analogs: hylin-d
20c5j6wA_



9.5 36
PDB header:antimicrobial protein
Chain: A: PDB Molecule:hylin-k;
PDBTitle: nmr structures of hylin-a1 analogs: hylin-k
21d1kf6d_



not modelled 8.6 20
Fold:Heme-binding four-helical bundle
Superfamily:Fumarate reductase respiratory complex transmembrane subunits
Family:Succinate dehydrogenase/Fumarate reductase transmembrane subunits (SdhC/FrdC and SdhD/FrdD)
22c6ig0H_



not modelled 8.6 50
PDB header:rna binding protein
Chain: H: PDB Molecule:type iii-a crispr-associated ramp protein csm5;
PDBTitle: type iii-a csm complex, cryo-em structure of csm-ctr1, atp bound
23d1urfa_



not modelled 7.3 19
Fold:Long alpha-hairpin
Superfamily:HR1 repeat
Family:HR1 repeat
24c6musF_



not modelled 7.3 50
PDB header:rna binding protein/rna
Chain: F: PDB Molecule:uncharacterized protein csm5;
PDBTitle: cryo-em structure of larger csm-crrna-target rna ternary complex in2 type iii-a crispr-cas system
25c5lqzW_



not modelled 6.6 12
PDB header:hydrolase
Chain: W: PDB Molecule:atp synthase subunit d;
PDBTitle: structure of f-atpase from pichia angusta, state1
26c5lqxW_



not modelled 6.6 12
PDB header:hydrolase
Chain: W: PDB Molecule:atp synthase subunit d;
PDBTitle: structure of f-atpase from pichia angusta, state3
27c5lqyW_



not modelled 6.6 12
PDB header:hydrolase
Chain: W: PDB Molecule:atp synthase subunit d;
PDBTitle: structure of f-atpase from pichia angusta, in state2
28c2zjsE_



not modelled 6.5 23
PDB header:protein transport/immune system
Chain: E: PDB Molecule:preprotein translocase sece subunit;
PDBTitle: crystal structure of secye translocon from thermus thermophilus with a2 fab fragment
29c2zqpE_



not modelled 6.5 23
PDB header:protein transport
Chain: E: PDB Molecule:preprotein translocase sece subunit;
PDBTitle: crystal structure of secye translocon from thermus2 thermophilus
30c1msvB_



not modelled 6.4 44
PDB header:lyase
Chain: B: PDB Molecule:s-adenosylmethionine decarboxylase proenzyme;
PDBTitle: the s68a s-adenosylmethionine decarboxylase proenzyme2 processing mutant.
31c5gtuB_



not modelled 6.4 57
PDB header:hydrolase
Chain: B: PDB Molecule:tbc1 domain family member 5;
PDBTitle: structural and mechanistic insights into regulation of the retromer2 coat by tbc1d5
32d1fs1b2



not modelled 6.3 23
Fold:POZ domain
Superfamily:POZ domain
Family:BTB/POZ domain
33d1jl0a_



not modelled 6.1 44
Fold:S-adenosylmethionine decarboxylase
Superfamily:S-adenosylmethionine decarboxylase
Family:S-adenosylmethionine decarboxylase
34c4px7A_



not modelled 6.0 17
PDB header:hydrolase
Chain: A: PDB Molecule:phosphatidylglycerophosphatase;
PDBTitle: crystal structure of lipid phosphatase e. coli pgpb
35d1lgha_



not modelled 5.8 36
Fold:Light-harvesting complex subunits
Superfamily:Light-harvesting complex subunits
Family:Light-harvesting complex subunits
36c4fe1I_



not modelled 5.8 33
PDB header:photosynthesis
Chain: I: PDB Molecule:photosystem i reaction center subunit viii;
PDBTitle: improving the accuracy of macromolecular structure refinement at 7 a2 resolution
37d1jb0i_



not modelled 5.8 33
Fold:Single transmembrane helix
Superfamily:Subunit VIII of photosystem I reaction centre, PsaI
Family:Subunit VIII of photosystem I reaction centre, PsaI
38c5wujA_



not modelled 5.6 22
PDB header:motor protein
Chain: A: PDB Molecule:flagellar m-ring protein;
PDBTitle: crystal structure of flif-flig complex from h. pylori
39c2m55B_



not modelled 5.6 33
PDB header:calcium binding protein/protein fibril
Chain: B: PDB Molecule:alpha-synuclein;
PDBTitle: nmr structure of the complex of an n-terminally acetylated alpha-2 synuclein peptide with calmodulin
40c6bcdB_



not modelled 5.5 23
PDB header:replication
Chain: B: PDB Molecule:dna polymerase zeta catalytic subunit;
PDBTitle: crystal structure of rev7-k44a/r124a/a135d in complex with rev3-rbm22 (residues 1988-2014)
41d2bapa1



not modelled 5.4 18
Fold:alpha-alpha superhelix
Superfamily:ARM repeat
Family:Diap1 N-terninal region-like
42c5w7lA_



not modelled 5.3 15
PDB header:membrane protein
Chain: A: PDB Molecule:n,n'-diacetylbacilliosaminyl-1-phosphate transferase;
PDBTitle: structure of campylobacter concisus pglc i57m/q175m variant
43c6bc8B_



not modelled 5.2 23
PDB header:replication
Chain: B: PDB Molecule:dna polymerase zeta catalytic subunit;
PDBTitle: crystal structure of rev7-r124a/rev3-rbm2 (residues 1988-2014) complex

Binding site prediction 

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Transmembrane helix prediction 

Transmembrane helices have been predicted in your sequence to adopt the topology shown below