Phyre Home Retrieve Phyre Job Id
Emailmdejesus@rockefeller.edu
DescriptionRVBD3098A_(RVBD3098A)_3467603_3467923
DateThu Aug 8 16:20:27 BST 2019
Unique Job ID6f4bba0c72561dca
SequenceVVIRGAVYRV ... Download FASTA
Job Typenormal
Job Expiry

Summary 

Top model
Image coloured by rainbow N → C terminus
Model dimensions (Å):X:36.601 Y:33.771 Z:36.043
Model (left) based on template d1m1fa_
Top template information
Fold:SH3-like barrel
Superfamily:Cell growth inhibitor/plasmid maintenance toxic component
Family:Kid/PemK
Confidence and coverage
Confidence:100.0% Coverage: 96%
102 residues ( 96% of your sequence) have been modelled with 100.0% confidence by the single highest scoring template.
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Sequence analysis 

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Secondary structure and disorder prediction [Show] 

Domain analysis [Show] 

Detailed template information [Hide] 

 

#
Template Alignment Coverage3D Model Confidence
% i.d. Template Information
1d1m1fa_



100.0 23
Fold:SH3-like barrel
Superfamily:Cell growth inhibitor/plasmid maintenance toxic component
Family:Kid/PemK
2c4mzpC_



100.0 28
PDB header:hydrolase
Chain: C: PDB Molecule:mazf mrna interferase;
PDBTitle: mazf from s. aureus crystal form iii, c2221, 2.7 a
3d1ne8a_



99.9 31
Fold:SH3-like barrel
Superfamily:Cell growth inhibitor/plasmid maintenance toxic component
Family:Kid/PemK
4c5hjzA_



99.9 27
PDB header:hydrolase/rna
Chain: A: PDB Molecule:endoribonuclease mazf9;
PDBTitle: structure of m. tuberculosis mazf-mt1 (rv2801c) in complex with rna
5d1ub4a_



99.9 23
Fold:SH3-like barrel
Superfamily:Cell growth inhibitor/plasmid maintenance toxic component
Family:Kid/PemK
6c5xe3B_



99.9 27
PDB header:hydrolase/antitoxin
Chain: B: PDB Molecule:endoribonuclease mazf4;
PDBTitle: endoribonuclease in complex with its cognate antitoxin from2 mycobacterial species
7c5hk3B_



99.9 24
PDB header:hydrolase/dna
Chain: B: PDB Molecule:endoribonuclease mazf6;
PDBTitle: crystal structure of m. tuberculosis mazf-mt3 t52d-f62d mutant in2 complex with dna
8c5wygC_



99.9 23
PDB header:hydrolase
Chain: C: PDB Molecule:probable endoribonuclease mazf7;
PDBTitle: the crystal structure of the apo form of mtb mazf
9c5ccaA_



99.8 14
PDB header:hydrolase
Chain: A: PDB Molecule:endoribonuclease mazf3;
PDBTitle: crystal structure of mtb toxin
10c3jrzA_



97.2 13
PDB header:toxin
Chain: A: PDB Molecule:ccdb;
PDBTitle: ccdbvfi-formii-ph5.6
11d3vuba_



94.7 14
Fold:SH3-like barrel
Superfamily:Cell growth inhibitor/plasmid maintenance toxic component
Family:CcdB
12c2l89A_



52.7 9
PDB header:protein binding
Chain: A: PDB Molecule:pwwp domain-containing protein 1;
PDBTitle: solution structure of pdp1 pwwp domain reveals its unique binding2 sites for methylated h4k20 and dna
13c5ikjA_



38.0 17
PDB header:transcription
Chain: A: PDB Molecule:cryptic loci regulator 2;
PDBTitle: structure of clr2 bound to the clr1 c-terminus
14c3mxuA_



30.6 21
PDB header:oxidoreductase
Chain: A: PDB Molecule:glycine cleavage system h protein;
PDBTitle: crystal structure of glycine cleavage system protein h from bartonella2 henselae
15c6n1bA_



27.4 14
PDB header:hydrolase
Chain: A: PDB Molecule:carbohydrate-binding protein;
PDBTitle: crystal structure of an n-acetylgalactosamine deacetylase from f.2 plautii in complex with blood group b trisaccharide
16c2edgA_



22.9 13
PDB header:biosynthetic protein
Chain: A: PDB Molecule:glycine cleavage system h protein;
PDBTitle: solution structure of the gcv_h domain from mouse glycine
17d1onla_



21.9 21
Fold:Barrel-sandwich hybrid
Superfamily:Single hybrid motif
Family:Biotinyl/lipoyl-carrier proteins and domains
18c3a8jF_



20.3 21
PDB header:transferase/transport protein
Chain: F: PDB Molecule:glycine cleavage system h protein;
PDBTitle: crystal structure of et-ehred complex
19d1h3za_



17.9 8
Fold:SH3-like barrel
Superfamily:Tudor/PWWP/MBT
Family:PWWP domain
20c2yewB_



17.7 45
PDB header:virus
Chain: B: PDB Molecule:e1 envelope glycoprotein;
PDBTitle: modeling barmah forest virus structural proteins
21d2daqa1



not modelled 16.7 12
Fold:SH3-like barrel
Superfamily:Tudor/PWWP/MBT
Family:PWWP domain
22d1hpca_



not modelled 16.6 17
Fold:Barrel-sandwich hybrid
Superfamily:Single hybrid motif
Family:Biotinyl/lipoyl-carrier proteins and domains
23c4rmoA_



not modelled 16.5 14
PDB header:toxin/rna
Chain: A: PDB Molecule:cptn toxin;
PDBTitle: crystal structure of the cptin type iii toxin-antitoxin system from2 eubacterium rectale
24c6nk6B_



not modelled 15.3 36
PDB header:virus like particle/signaling protein
Chain: B: PDB Molecule:e1 glycoprotein;
PDBTitle: electron cryo-microscopy of chikungunya vlp in complex with mouse2 mxra8 receptor
25c3iftA_



not modelled 15.1 17
PDB header:oxidoreductase
Chain: A: PDB Molecule:glycine cleavage system h protein;
PDBTitle: crystal structure of glycine cleavage system protein h from2 mycobacterium tuberculosis, using x-rays from the compact light3 source.
26c2alaA_



not modelled 14.8 41
PDB header:viral protein
Chain: A: PDB Molecule:structural polyprotein (p130);
PDBTitle: crystal structure of the semliki forest virus envelope protein e1 in2 its monomeric conformation.
27c2xfcD_



not modelled 14.6 36
PDB header:virus
Chain: D: PDB Molecule:e1 envelope glycoprotein;
PDBTitle: the chikungunya e1 e2 envelope glycoprotein complex fit into2 the semliki forest virus cryo-em map
28c2xfbF_



not modelled 14.6 36
PDB header:virus
Chain: F: PDB Molecule:e1 envelope glycoprotein;
PDBTitle: the chikungunya e1 e2 envelope glycoprotein complex fit into2 the sindbis virus cryo-em map
29c3n42F_



not modelled 14.5 36
PDB header:viral protein
Chain: F: PDB Molecule:e1 envelope glycoprotein;
PDBTitle: crystal structures of the mature envelope glycoprotein complex (furin2 cleavage) of chikungunya virus.
30c1ld4O_



not modelled 14.1 41
PDB header:virus
Chain: O: PDB Molecule:spike glycoprotein e1;
PDBTitle: placement of the structural proteins in sindbis virus
31d2alaa2



not modelled 13.2 41
Fold:Viral glycoprotein, central and dimerisation domains
Superfamily:Viral glycoprotein, central and dimerisation domains
Family:Viral glycoprotein, central and dimerisation domains
32c5vc8B_



not modelled 13.1 8
PDB header:dna binding protein
Chain: B: PDB Molecule:histone-lysine n-methyltransferase nsd2;
PDBTitle: crystal structure of the whsc1 pwwp1 domain
33c2jysA_



not modelled 12.2 30
PDB header:hydrolase
Chain: A: PDB Molecule:protease/reverse transcriptase;
PDBTitle: solution structure of simian foamy virus (mac) protease
34c3j0cG_



not modelled 11.1 36
PDB header:virus
Chain: G: PDB Molecule:e1 envelope glycoprotein;
PDBTitle: models of e1, e2 and cp of venezuelan equine encephalitis virus tc-832 strain restrained by a near atomic resolution cryo-em map
35c1z8yE_



not modelled 11.1 41
PDB header:virus
Chain: E: PDB Molecule:spike glycoprotein e1;
PDBTitle: mapping the e2 glycoprotein of alphaviruses
36c3muwE_



not modelled 10.6 41
PDB header:virus
Chain: E: PDB Molecule:structural polyprotein;
PDBTitle: pseudo-atomic structure of the e2-e1 protein shell in sindbis virus
37c3pfsA_



not modelled 10.6 10
PDB header:protein binding
Chain: A: PDB Molecule:bromodomain and phd finger-containing protein 3;
PDBTitle: pwwp domain of human bromodomain and phd finger-containing protein 3
38c3j0fG_



not modelled 10.5 41
PDB header:virus
Chain: G: PDB Molecule:e1 envelope glycoprotein;
PDBTitle: sindbis virion
39c5cuzA_



not modelled 10.5 45
PDB header:chaperone
Chain: A: PDB Molecule:methylmalonic aciduria and homocystinuria type d protein,
PDBTitle: crystal structure of semet-substituted n-terminal truncated human b12-2 chaperone cbld (108-296)
40c6mx4J_



not modelled 10.3 36
PDB header:virus
Chain: J: PDB Molecule:e1;
PDBTitle: cryoem structure of chimeric eastern equine encephalitis virus
41c4p7xA_



not modelled 9.9 21
PDB header:oxidoreductase
Chain: A: PDB Molecule:l-proline cis-4-hydroxylase;
PDBTitle: l-pipecolic acid-bound l-proline cis-4-hydroxylase
42c3jb4A_



not modelled 9.8 20
PDB header:virus
Chain: A: PDB Molecule:vp1;
PDBTitle: structure of ljungan virus: insight into picornavirus packaging
43c1l1kA_



not modelled 9.4 36
PDB header:protein binding
Chain: A: PDB Molecule:barstar;
PDBTitle: nmr identification and characterization of the flexible2 regions in the 160 kd molten globule-like aggregate of3 barstar at low ph
44c3muuA_



not modelled 9.1 41
PDB header:viral protein
Chain: A: PDB Molecule:structural polyprotein;
PDBTitle: crystal structure of the sindbis virus e2-e1 heterodimer at low ph
45c3efyB_



not modelled 8.7 29
PDB header:cell cycle
Chain: B: PDB Molecule:cif (cell cycle inhibiting factor);
PDBTitle: structure of the cyclomodulin cif from pathogenic2 escherichia coli
46d2nlua1



not modelled 8.4 9
Fold:SH3-like barrel
Superfamily:Tudor/PWWP/MBT
Family:PWWP domain
47c4ld6A_



not modelled 7.7 7
PDB header:unknown function
Chain: A: PDB Molecule:pwwp domain-containing protein 2b;
PDBTitle: pwwp domain of human pwwp domain-containing protein 2b
48d1e5ra_



not modelled 7.6 10
Fold:Double-stranded beta-helix
Superfamily:Clavaminate synthase-like
Family:Type II Proline 3-hydroxylase (proline oxidase)
49d1n27a_



not modelled 7.5 9
Fold:SH3-like barrel
Superfamily:Tudor/PWWP/MBT
Family:PWWP domain
50c3llrA_



not modelled 7.3 11
PDB header:transferase
Chain: A: PDB Molecule:dna (cytosine-5)-methyltransferase 3a;
PDBTitle: crystal structure of the pwwp domain of human dna (cytosine-5-)-2 methyltransferase 3 alpha
51d1ex0a1



not modelled 7.2 19
Fold:Immunoglobulin-like beta-sandwich
Superfamily:E set domains
Family:Transglutaminase N-terminal domain
52c1ssfA_



not modelled 6.7 23
PDB header:cell cycle
Chain: A: PDB Molecule:transformation related protein 53 binding
PDBTitle: solution structure of the mouse 53bp1 fragment (residues2 1463-1617)
53c1e9yB_



not modelled 6.7 23
PDB header:hydrolase
Chain: B: PDB Molecule:urease subunit beta;
PDBTitle: crystal structure of helicobacter pylori urease in complex with2 acetohydroxamic acid
54c2v1lA_



not modelled 6.2 20
PDB header:unknown function
Chain: A: PDB Molecule:hypothetical protein;
PDBTitle: structure of the conserved hypothetical protein vc1805 from2 pathogenicity island vpi-2 of vibrio cholerae o1 biovar3 eltor str. n16961 shares structural homology with the4 human p32 protein
55c3d55A_



not modelled 6.2 19
PDB header:toxin inhibitor
Chain: A: PDB Molecule:uncharacterized protein rv3357/mt3465;
PDBTitle: crystal structure of m. tuberculosis yefm antitoxin
56c2fqpD_



not modelled 6.0 13
PDB header:metal binding protein
Chain: D: PDB Molecule:hypothetical protein bp2299;
PDBTitle: crystal structure of a cupin domain (bp2299) from bordetella pertussis2 tohama i at 1.80 a resolution
57c5t86A_



not modelled 5.9 36
PDB header:toxin
Chain: A: PDB Molecule:cdia toxin;
PDBTitle: crystal structure of cdi complex from e. coli a0 34/86
58d2q3za1



not modelled 5.6 13
Fold:Immunoglobulin-like beta-sandwich
Superfamily:E set domains
Family:Transglutaminase N-terminal domain
59d1zaka2



not modelled 5.5 21
Fold:Rubredoxin-like
Superfamily:Microbial and mitochondrial ADK, insert "zinc finger" domain
Family:Microbial and mitochondrial ADK, insert "zinc finger" domain
60d2gy9m1



not modelled 5.5 19
Fold:S13-like H2TH domain
Superfamily:S13-like H2TH domain
Family:Ribosomal protein S13
61c2ky9A_



not modelled 5.4 24
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:uncharacterized protein ydhk;
PDBTitle: solution nmr structure of ydhk c-terminal domain from b.subtilis,2 northeast structural genomics consortium target target sr518
62c2bf9A_



not modelled 5.3 11
PDB header:hormone
Chain: A: PDB Molecule:pancreatic hormone;
PDBTitle: anisotropic refinement of avian (turkey) pancreatic polypeptide at 0.2 99 angstroms resolution.
63c3bxpA_



not modelled 5.3 17
PDB header:hydrolase
Chain: A: PDB Molecule:putative lipase/esterase;
PDBTitle: crystal structure of a putative carboxylesterase (lp_2923) from2 lactobacillus plantarum wcfs1 at 1.70 a resolution
64d1w7ca2



not modelled 5.2 11
Fold:Cystatin-like
Superfamily:Amine oxidase N-terminal region
Family:Amine oxidase N-terminal region
65c4eyzB_



not modelled 5.1 25
PDB header:hydrolase
Chain: B: PDB Molecule:cellulosome-related protein module from ruminococcus
PDBTitle: crystal structure of an uncommon cellulosome-related protein module2 from ruminococcus flavefaciens that resembles papain-like cysteine3 peptidases

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