Phyre Home Retrieve Phyre Job Id
Emailmdejesus@rockefeller.edu
DescriptionRVBD3100c_(smpB)_3469298_3469780
DateThu Aug 8 16:20:28 BST 2019
Unique Job IDae904fb6a5dd8d42
SequenceVSKSSRGGRQ ... Download FASTA
Job Typenormal
Job Expiry

Summary 

Top model
Image coloured by rainbow N → C terminus
Model dimensions (Å):X:53.366 Y:56.023 Z:42.720
Model (left) based on template c5zeyC_
Top template information
PDB header:ribosome
Chain: C: PDB Molecule:ssra-binding protein;
PDBTitle: m. smegmatis trans-translation state 70s ribosome
Confidence and coverage
Confidence:100.0% Coverage: 99%
158 residues ( 99% of your sequence) have been modelled with 100.0% confidence by the single highest scoring template.
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Sequence analysis 

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Secondary structure and disorder prediction [Show] 

Domain analysis [Show] 

Detailed template information [Hide] 

 

#
Template Alignment Coverage3D Model Confidence
% i.d. Template Information
1c5zeyC_



100.0 76
PDB header:ribosome
Chain: C: PDB Molecule:ssra-binding protein;
PDBTitle: m. smegmatis trans-translation state 70s ribosome
2d1p6va_



100.0 50
Fold:Small protein B (SmpB)
Superfamily:Small protein B (SmpB)
Family:Small protein B (SmpB)
3c1p6vC_



100.0 50
PDB header:rna binding protein/rna
Chain: C: PDB Molecule:ssra-binding protein;
PDBTitle: crystal structure of the trna domain of transfer-messenger2 rna in complex with smpb
4c1j1hA_



100.0 52
PDB header:rna binding protein
Chain: A: PDB Molecule:small protein b;
PDBTitle: solution structure of a tmrna-binding protein, smpb, from2 thermus thermophilus
5d1wjxa_



100.0 53
Fold:Small protein B (SmpB)
Superfamily:Small protein B (SmpB)
Family:Small protein B (SmpB)
6c6hbeA_



36.0 21
PDB header:oxidoreductase
Chain: A: PDB Molecule:copper-containing nitrite reductase;
PDBTitle: cu-containing nitrite reductase (nirk) from thermus scotoductus sa-01
7d2ipqx1



31.9 25
Fold:DNA/RNA-binding 3-helical bundle
Superfamily:"Winged helix" DNA-binding domain
Family:STY4665 C-terminal domain-like
8c2qnkA_



21.3 30
PDB header:oxidoreductase
Chain: A: PDB Molecule:3-hydroxyanthranilate 3,4-dioxygenase;
PDBTitle: crystal structure of human 3-hydroxyanthranilate 3,4-dioxygenase
9d1sdwa2



19.0 15
Fold:Nucleoplasmin-like/VP (viral coat and capsid proteins)
Superfamily:PHM/PNGase F
Family:Peptidylglycine alpha-hydroxylating monooxygenase, PHM
10c4q28B_



15.9 23
PDB header:structural protein
Chain: B: PDB Molecule:periplakin;
PDBTitle: crystal structure of the plectin 1 and 2 repeats of the human2 periplakin. northeast structural genomics consortium (nesg) target3 hr9083a
11c1wqsA_



15.5 14
PDB header:hydrolase
Chain: A: PDB Molecule:3c-like protease;
PDBTitle: crystal structure of norovirus 3c-like protease
12d1g31a_



15.3 27
Fold:GroES-like
Superfamily:GroES-like
Family:GroES
13d1yfua1



14.3 19
Fold:Double-stranded beta-helix
Superfamily:RmlC-like cupins
Family:3-hydroxyanthranilic acid dioxygenase-like
14c4u39L_



13.9 45
PDB header:cell cycle
Chain: L: PDB Molecule:cell division factor;
PDBTitle: crystal structure of ftsz:mciz complex from bacillus subtilis
15c6b6iD_



13.4 18
PDB header:viral protein,protease
Chain: D: PDB Molecule:3c-like protease;
PDBTitle: 2.4a resolution structure of human norovirus gii.4 protease
16c4u39J_



13.2 45
PDB header:cell cycle
Chain: J: PDB Molecule:cell division factor;
PDBTitle: crystal structure of ftsz:mciz complex from bacillus subtilis
17c6pqhA_



12.8 29
PDB header:ligase
Chain: A: PDB Molecule:asparagine--trna ligase;
PDBTitle: crystal structure of asparagine-trna ligase from elizabethkingia sp.2 ccug 26117
18c2elvA_



12.1 38
PDB header:transcription
Chain: A: PDB Molecule:zinc finger protein 406;
PDBTitle: solution structure of the 6th c2h2 zinc finger of human2 zinc finger protein 406
19c4ij2E_



11.1 23
PDB header:oxygen transport/protein binding
Chain: E: PDB Molecule:iron-regulated surface determinant protein h;
PDBTitle: human methemoglobin in complex with the second and third neat domains2 of isdh from staphylococcus aureus
20c3jsbA_



11.0 17
PDB header:rna binding protein
Chain: A: PDB Molecule:rna-directed rna polymerase;
PDBTitle: crystal structure of the n-terminal domain of the lymphocytic2 choriomeningitis virus l protein
21c5t2tB_



not modelled 10.8 17
PDB header:transferase
Chain: B: PDB Molecule:rna-directed rna polymerase l;
PDBTitle: crystal structure of lymphocytic choriomeningitis mammarenavirus2 endonuclease bound to compound l742001
22c1hf9B_



not modelled 10.2 29
PDB header:atpase inhibitor
Chain: B: PDB Molecule:atpase inhibitor (mitochondrial);
PDBTitle: c-terminal coiled-coil domain from bovine if1
23c4i1tA_



not modelled 10.2 28
PDB header:viral protein
Chain: A: PDB Molecule:rna-directed rna polymerase l;
PDBTitle: crystal structure of the cap-snatching endonuclease from pichinde2 virus
24c6nwoD_



not modelled 9.7 12
PDB header:transcription
Chain: D: PDB Molecule:transcriptional regulator bgar;
PDBTitle: structures of the transcriptional regulator bgar, a lactose sensor.
25d1zvfa1



not modelled 9.6 15
Fold:Double-stranded beta-helix
Superfamily:RmlC-like cupins
Family:3-hydroxyanthranilic acid dioxygenase-like
26c2quoA_



not modelled 9.3 27
PDB header:toxin
Chain: A: PDB Molecule:heat-labile enterotoxin b chain;
PDBTitle: crystal structure of c terminal fragment of clostridium perfringens2 enterotoxin
27c5hgqD_



not modelled 9.3 30
PDB header:ligase/ligase inhibitor
Chain: D: PDB Molecule:lysine--trna ligase;
PDBTitle: loa loa lysyl-trna synthetase in complex with cladosporin.
28c4u39N_



not modelled 9.1 36
PDB header:cell cycle
Chain: N: PDB Molecule:cell division factor;
PDBTitle: crystal structure of ftsz:mciz complex from bacillus subtilis
29d1d1na_



not modelled 8.8 20
Fold:Reductase/isomerase/elongation factor common domain
Superfamily:Translation proteins
Family:Elongation factors
30c5xumA_



not modelled 8.8 22
PDB header:transferase
Chain: A: PDB Molecule:holo-[acyl-carrier-protein] synthase;
PDBTitle: crystal structure of thermotoga maritima holo-[acyl-carrier-protein]2 synthase (acps)
31c2oa9B_



not modelled 8.7 24
PDB header:hydrolase
Chain: B: PDB Molecule:r.mvai;
PDBTitle: restriction endonuclease mvai in the absence of dna
32c4miwA_



not modelled 8.6 22
PDB header:viral protein, transferase
Chain: A: PDB Molecule:rna-directed rna polymerase l;
PDBTitle: high-resolution structure of the n-terminal endonuclease domain of the2 lassa virus l polymerase
33c3mjdA_



not modelled 8.5 31
PDB header:transferase
Chain: A: PDB Molecule:orotate phosphoribosyltransferase;
PDBTitle: 1.9 angstrom crystal structure of orotate phosphoribosyltransferase2 (pyre) francisella tularensis.
34c2w3zA_



not modelled 8.0 12
PDB header:hydrolase
Chain: A: PDB Molecule:putative deacetylase;
PDBTitle: structure of a streptococcus mutans ce4 esterase
35c4tq0D_



not modelled 7.6 29
PDB header:protein binding
Chain: D: PDB Molecule:autophagy-related protein 16-1;
PDBTitle: crystal structure of human atg5-atg16n69
36c4tq0B_



not modelled 7.5 29
PDB header:protein binding
Chain: B: PDB Molecule:autophagy-related protein 16-1;
PDBTitle: crystal structure of human atg5-atg16n69
37d2c0ha1



not modelled 7.3 11
Fold:TIM beta/alpha-barrel
Superfamily:(Trans)glycosidases
Family:beta-glycanases
38d2cc0a1



not modelled 7.3 15
Fold:7-stranded beta/alpha barrel
Superfamily:Glycoside hydrolase/deacetylase
Family:NodB-like polysaccharide deacetylase
39d2c1ia1



not modelled 7.1 16
Fold:7-stranded beta/alpha barrel
Superfamily:Glycoside hydrolase/deacetylase
Family:NodB-like polysaccharide deacetylase
40d2nlya1



not modelled 7.1 23
Fold:7-stranded beta/alpha barrel
Superfamily:Glycoside hydrolase/deacetylase
Family:Divergent polysaccharide deacetylase
41c4l1gB_



not modelled 6.6 24
PDB header:hydrolase
Chain: B: PDB Molecule:peptidoglycan n-acetylglucosamine deacetylase;
PDBTitle: crystal structure of the bc1960 peptidoglycan n-acetylglucosamine2 deacetylase from bacillus cereus
42c5npvB_



not modelled 6.6 29
PDB header:cell cycle
Chain: B: PDB Molecule:autophagy-related protein 16-1;
PDBTitle: structure of human atg5-atg16l1(atg5bd) complex (i4)
43c4m1bA_



not modelled 6.5 20
PDB header:hydrolase
Chain: A: PDB Molecule:polysaccharide deacetylase;
PDBTitle: structural determination of ba0150, a polysaccharide deacetylase from2 bacillus anthracis
44c5npvD_



not modelled 6.4 29
PDB header:cell cycle
Chain: D: PDB Molecule:autophagy-related protein 16-1;
PDBTitle: structure of human atg5-atg16l1(atg5bd) complex (i4)
45c5npwF_



not modelled 6.4 29
PDB header:cell cycle
Chain: F: PDB Molecule:autophagy-related protein 16-1;
PDBTitle: structure of human atg5-atg16l1(atg5bd) complex (c2)
46c3rpmA_



not modelled 6.4 23
PDB header:hydrolase
Chain: A: PDB Molecule:beta-n-acetyl-hexosaminidase;
PDBTitle: crystal structure of the first gh20 domain of a novel beta-n-acetyl-2 hexosaminidase strh from streptococcus pneumoniae r6
47c2ylaA_



not modelled 6.3 15
PDB header:hydrolase
Chain: A: PDB Molecule:beta-n-acetylhexosaminidase;
PDBTitle: inhibition of the pneumococcal virulence factor strh and2 molecular insights into n-glycan recognition and3 hydrolysis
48c4u1eB_



not modelled 6.3 35
PDB header:translation
Chain: B: PDB Molecule:eukaryotic translation initiation factor 3 subunit b;
PDBTitle: crystal structure of the eif3b-ctd/eif3i/eif3g-ntd translation2 initiation complex
49c5jp6A_



not modelled 6.3 11
PDB header:hydrolase
Chain: A: PDB Molecule:putative polysaccharide deacetylase;
PDBTitle: bdellovibrio bacteriovorus peptidoglycan deacetylase bd3279
50d1im3d_



not modelled 6.2 22
Fold:Immunoglobulin-like beta-sandwich
Superfamily:E set domains
Family:Cytomegalovirus protein US2
51d1h2ca_



not modelled 6.1 9
Fold:EV matrix protein
Superfamily:EV matrix protein
Family:EV matrix protein
52d1kk1a1



not modelled 6.1 32
Fold:Reductase/isomerase/elongation factor common domain
Superfamily:Translation proteins
Family:Elongation factors
53d8ohma2



not modelled 6.1 19
Fold:P-loop containing nucleoside triphosphate hydrolases
Superfamily:P-loop containing nucleoside triphosphate hydrolases
Family:RNA helicase
54c2r2yA_



not modelled 6.1 29
PDB header:protein binding
Chain: A: PDB Molecule:protein adrm1;
PDBTitle: crystal structure of the proteasomal rpn13 pru-domain
55c2z59A_



not modelled 6.1 29
PDB header:protein transport
Chain: A: PDB Molecule:protein adrm1;
PDBTitle: complex structures of mouse rpn13 (22-130aa) and ubiquitin
56c5x8r8_



not modelled 6.1 25
PDB header:ribosome
Chain: 8: PDB Molecule:30s ribosomal protein s1, chloroplastic;
PDBTitle: structure of the 30s small subunit of chloroplast ribosome from2 spinach
57c1h2dA_



not modelled 6.1 9
PDB header:virus/viral protein
Chain: A: PDB Molecule:matrix protein vp40;
PDBTitle: ebola virus matrix protein vp40 n-terminal domain in complex with rna2 (low-resolution vp40[31-212] variant).
58d2ieca1



not modelled 5.9 71
Fold:MK0786-like
Superfamily:MK0786-like
Family:MK0786-like
59c1gmjD_



not modelled 5.9 29
PDB header:atpase inhibitor
Chain: D: PDB Molecule:atpase inhibitor;
PDBTitle: the structure of bovine if1, the regulatory subunit of mitochondrial2 f-atpase
60d2i52a1



not modelled 5.6 71
Fold:MK0786-like
Superfamily:MK0786-like
Family:MK0786-like
61c4uecB_



not modelled 5.6 29
PDB header:translation
Chain: B: PDB Molecule:eukaryotic translation initiation factor 4g, isoform a;
PDBTitle: complex of d. melanogaster eif4e with eif4g and cap analog
62c4h3wB_



not modelled 5.5 47
PDB header:structural genomics, unknown function
Chain: B: PDB Molecule:hypothetical protein;
PDBTitle: crystal structure of a putative secreted protein (bdi_1231) from2 parabacteroides distasonis atcc 8503 at 2.00 a resolution
63c4ah6B_



not modelled 5.5 24
PDB header:ligase
Chain: B: PDB Molecule:aspartate--trna ligase, mitochondrial;
PDBTitle: human mitochondrial aspartyl-trna synthetase
64d1jaka1



not modelled 5.3 15
Fold:TIM beta/alpha-barrel
Superfamily:(Trans)glycosidases
Family:beta-N-acetylhexosaminidase catalytic domain
65c2ogfD_



not modelled 5.2 57
PDB header:structural genomics, unknown function
Chain: D: PDB Molecule:hypothetical protein mj0408;
PDBTitle: crystal structure of protein mj0408 from methanococcus jannaschii,2 pfam duf372
66d1yhta1



not modelled 5.2 25
Fold:TIM beta/alpha-barrel
Superfamily:(Trans)glycosidases
Family:beta-N-acetylhexosaminidase catalytic domain
67c3wzhA_



not modelled 5.2 18
PDB header:transcription
Chain: A: PDB Molecule:uncharacterized protein af_1864;
PDBTitle: crystal structure of afcsx3
68d1mkya3



not modelled 5.2 25
Fold:Alpha-lytic protease prodomain-like
Superfamily:Probable GTPase Der, C-terminal domain
Family:Probable GTPase Der, C-terminal domain
69d2qfaa1



not modelled 5.2 23
Fold:Inhibitor of apoptosis (IAP) repeat
Superfamily:Inhibitor of apoptosis (IAP) repeat
Family:Inhibitor of apoptosis (IAP) repeat
70d2gjxa1



not modelled 5.1 5
Fold:TIM beta/alpha-barrel
Superfamily:(Trans)glycosidases
Family:beta-N-acetylhexosaminidase catalytic domain

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