Phyre Home Retrieve Phyre Job Id
Emailmdejesus@rockefeller.edu
DescriptionRVBD3101c_(ftsX)_3469783_3470676
DateThu Aug 8 16:20:28 BST 2019
Unique Job ID0b849bbfb425a9a8
SequenceVRFGFLLNEV ... Download FASTA
Job Typenormal
Job Expiry

Summary 

Top model
Image coloured by rainbow N → C terminus
Model dimensions (Å):X:55.392 Y:48.283 Z:96.722
Model (left) based on template c5xu1M_
Top template information
PDB header:transport protein
Chain: M: PDB Molecule:abc transporter permeae;
PDBTitle: structure of a non-canonical abc transporter from streptococcus2 pneumoniae r6
Confidence and coverage
Confidence:100.0% Coverage: 94%
280 residues ( 94% of your sequence) have been modelled with 100.0% confidence by the single highest scoring template.
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Sequence analysis 

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Domain analysis [Show] 

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#
Template Alignment Coverage3D Model Confidence
% i.d. Template Information
1c5xu1M_
100.0 15
PDB header:transport protein
Chain: M: PDB Molecule:abc transporter permeae;
PDBTitle: structure of a non-canonical abc transporter from streptococcus2 pneumoniae r6
2c5nikK_
100.0 17
PDB header:transport protein
Chain: K: PDB Molecule:macrolide export atp-binding/permease protein macb;
PDBTitle: structure of the macab-tolc abc-type tripartite multidrug efflux pump
3c5ws4A_
100.0 18
PDB header:membrane protein
Chain: A: PDB Molecule:macrolide export atp-binding/permease protein macb;
PDBTitle: crystal structure of tripartite-type abc transporter macb from2 acinetobacter baumannii
4c5lj7B_
100.0 15
PDB header:transport protein
Chain: B: PDB Molecule:macrolide export atp-binding/permease protein macb;
PDBTitle: structure of aggregatibacter actinomycetemcomitans macb bound to atp2 (p21)
5c4n8oA_
99.5 100
PDB header:membrane protein
Chain: A: PDB Molecule:cell division protein ftsx;
PDBTitle: crystal structure of mycobacterial ftsx extracellular domain, bromide2 derivative
6c6mk7A_
99.3 19
PDB header:membrane protein
Chain: A: PDB Molecule:cell division protein ftsx;
PDBTitle: solution structure of the large extracellular loop of ftsx in2 streptococcus pneumoniae
7c5x5yF_
93.0 14
PDB header:membrane protein
Chain: F: PDB Molecule:uncharacterized protein;
PDBTitle: a membrane protein complex
8c1ciiA_
92.1 9
PDB header:transmembrane protein
Chain: A: PDB Molecule:colicin ia;
PDBTitle: colicin ia
9c6mjpF_
91.7 15
PDB header:lipid transport
Chain: F: PDB Molecule:fig000988: predicted permease;
PDBTitle: lptb(e163q)fgc from vibrio cholerae
10c5l75F_
91.4 11
PDB header:transport protein
Chain: F: PDB Molecule:fig000988: predicted permease;
PDBTitle: a protein structure
11c6ic4H_
89.8 12
PDB header:protein transport
Chain: H: PDB Molecule:abc transporter permease;
PDBTitle: cryo-em structure of the a. baumannii mla complex at 8.7 a resolution
12c5l75G_
88.0 15
PDB header:transport protein
Chain: G: PDB Molecule:fig000906: predicted permease;
PDBTitle: a protein structure
13c6mjpG_
87.5 14
PDB header:lipid transport
Chain: G: PDB Molecule:lps export abc transporter permease lptg;
PDBTitle: lptb(e163q)fgc from vibrio cholerae
14c5x5yG_
86.0 12
PDB header:membrane protein
Chain: G: PDB Molecule:uncharacterized protein;
PDBTitle: a membrane protein complex
15c1oy8A_
55.4 13
PDB header:membrane protein
Chain: A: PDB Molecule:acriflavine resistance protein b;
PDBTitle: structural basis of multiple drug binding capacity of the acrb2 multidrug efflux pump
16c6btmD_
49.5 8
PDB header:membrane protein
Chain: D: PDB Molecule:alternative complex iii subunit d;
PDBTitle: structure of alternative complex iii from flavobacterium johnsoniae2 (wild type)
17c4k0eC_
42.0 12
PDB header:transport protein
Chain: C: PDB Molecule:heavy metal cation tricomponent efflux pump znea(czca-
PDBTitle: x-ray crystal structure of a heavy metal efflux pump, crystal form ii
18c5naaB_
40.7 11
PDB header:protein transport
Chain: B: PDB Molecule:lipoprotein-releasing system transmembrane protein lolc;
PDBTitle: lipoprotein-releasing system transmembrane protein lolc
19c3ibwA_
38.4 14
PDB header:transferase
Chain: A: PDB Molecule:gtp pyrophosphokinase;
PDBTitle: crystal structure of the act domain from gtp pyrophosphokinase of2 chlorobium tepidum. northeast structural genomics consortium target3 ctr148a
20d2cyya2
31.2 16
Fold:Ferredoxin-like
Superfamily:Dimeric alpha+beta barrel
Family:Lrp/AsnC-like transcriptional regulator C-terminal domain
21c3ftjA_
not modelled 30.1 10
PDB header:hydrolase
Chain: A: PDB Molecule:macrolide export atp-binding/permease protein
PDBTitle: crystal structure of the periplasmic region of macb from2 actinobacillus actinomycetemcomitans
22c6ajjA_
not modelled 29.1 12
PDB header:membrane protein, hydrolase
Chain: A: PDB Molecule:drug exporters of the rnd superfamily-like protein,
PDBTitle: crystal structure of mycolic acid transporter mmpl3 from mycobacterium2 smegmatis complexed with ica38
23c6f0kD_
not modelled 28.9 15
PDB header:membrane protein
Chain: D: PDB Molecule:actd;
PDBTitle: alternative complex iii
24c5njgB_
not modelled 27.4 16
PDB header:transport protein
Chain: B: PDB Molecule:atp-binding cassette sub-family g member 2;
PDBTitle: structure of an abc transporter: part of the structure that could be2 built de novo
25c5jefA_
not modelled 25.2 7
PDB header:transferase
Chain: A: PDB Molecule:nitrate/nitrite sensor protein narq;
PDBTitle: fragment of nitrate/nitrite sensor histidine kinase narq (wt) in2 asymmetric holo state
26c4ymuC_
not modelled 25.2 7
PDB header:protein binding/transport protein
Chain: C: PDB Molecule:abc-type amino acid transport system, permease component;
PDBTitle: crystal structure of an amino acid abc transporter complex with2 arginines and atps
27c2zbcH_
not modelled 23.8 20
PDB header:transcription
Chain: H: PDB Molecule:83aa long hypothetical transcriptional regulator asnc;
PDBTitle: crystal structure of sts042, a stand-alone ram module protein, from2 hyperthermophilic archaeon sulfolobus tokodaii strain7.
28d1i1ga2
not modelled 22.6 13
Fold:Ferredoxin-like
Superfamily:Dimeric alpha+beta barrel
Family:Lrp/AsnC-like transcriptional regulator C-terminal domain
29c5gasN_
not modelled 19.1 8
PDB header:hydrolase
Chain: N: PDB Molecule:archaeal/vacuolar-type h+-atpase subunit i;
PDBTitle: thermus thermophilus v/a-atpase, conformation 2
30c2e1aD_
not modelled 17.3 14
PDB header:transcription
Chain: D: PDB Molecule:75aa long hypothetical regulatory protein asnc;
PDBTitle: crystal structure of ffrp-dm1
31d2cg4a2
not modelled 16.6 7
Fold:Ferredoxin-like
Superfamily:Dimeric alpha+beta barrel
Family:Lrp/AsnC-like transcriptional regulator C-terminal domain
32c6n3qA_
not modelled 13.0 23
PDB header:transport protein
Chain: A: PDB Molecule:protein transport protein sec61;
PDBTitle: cryo-em structure of the yeast sec complex
33c5udfB_
not modelled 12.8 5
PDB header:protein transport
Chain: B: PDB Molecule:lipoprotein-releasing system transmembrane protein lole;
PDBTitle: structure of the n-terminal domain of lipoprotein-releasing system2 transmembrane protein lole from acinetobacter baumannii
34c2cwbA_
not modelled 12.6 16
PDB header:protein binding
Chain: A: PDB Molecule:chimera of immunoglobulin g binding protein g
PDBTitle: solution structure of the ubiquitin-associated domain of2 human bmsc-ubp and its complex with ubiquitin
35c1wr1B_
not modelled 12.5 8
PDB header:signaling protein
Chain: B: PDB Molecule:ubiquitin-like protein dsk2;
PDBTitle: the complex sturcture of dsk2p uba with ubiquitin
36c2wwbA_
not modelled 11.6 13
PDB header:ribosome
Chain: A: PDB Molecule:protein transport protein sec61 subunit alpha isoform 1;
PDBTitle: cryo-em structure of the mammalian sec61 complex bound to the actively2 translating wheat germ 80s ribosome
37d1veja1
not modelled 11.0 20
Fold:RuvA C-terminal domain-like
Superfamily:UBA-like
Family:UBA domain
38d2bwba1
not modelled 10.8 8
Fold:RuvA C-terminal domain-like
Superfamily:UBA-like
Family:UBA domain
39c5a43B_
not modelled 10.7 14
PDB header:transport protein
Chain: B: PDB Molecule:putative fluoride ion transporter crcb;
PDBTitle: crystal structure of a dual topology fluoride ion channel.
40c3i4pA_
not modelled 10.5 11
PDB header:transcription regulator
Chain: A: PDB Molecule:transcriptional regulator, asnc family;
PDBTitle: crystal structure of asnc family transcriptional regulator from2 agrobacterium tumefaciens
41d2dnaa1
not modelled 10.5 16
Fold:RuvA C-terminal domain-like
Superfamily:UBA-like
Family:UBA domain
42c3ltiA_
not modelled 10.5 19
PDB header:transferase
Chain: A: PDB Molecule:dna-directed rna polymerase subunit beta;
PDBTitle: crystal structure of the escherichia coli rna polymerase beta subunit2 beta2-betai4 domains
43c2dahA_
not modelled 9.7 16
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:ubiquilin-3;
PDBTitle: solution structure of the c-terminal uba domain in the2 human ubiquilin 3
44d2daha1
not modelled 9.6 16
Fold:RuvA C-terminal domain-like
Superfamily:UBA-like
Family:UBA domain
45c2dnaA_
not modelled 9.0 16
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:unnamed protein product;
PDBTitle: solution structure of rsgi ruh-056, a uba domain from mouse2 cdna
46c2ec1A_
not modelled 8.2 7
PDB header:transport protein
Chain: A: PDB Molecule:nucleoporin 50 kda;
PDBTitle: solution structure of the ranbd1 domain from human2 nucleoporin 50 kda
47c2mv6A_
not modelled 8.2 14
PDB header:membrane protein
Chain: A: PDB Molecule:erythropoietin receptor;
PDBTitle: solution structure of the transmembrane domain and the juxta-membrane2 domain of the erythropoietin receptor in micelles
48c5zazA_
not modelled 8.1 19
PDB header:cell adhesion
Chain: A: PDB Molecule:integrin beta-2;
PDBTitle: solution structure of integrin b2 monomer tranmembrane domain in2 bicelle
49c2jy5A_
not modelled 7.9 12
PDB header:signaling protein
Chain: A: PDB Molecule:ubiquilin-1;
PDBTitle: nmr structure of ubiquilin 1 uba domain
50c1vx11_
not modelled 7.9 13
PDB header:ribosome
Chain: 1: PDB Molecule:sec61 alpha subunit;
PDBTitle: structure of the translating mammalian ribosome-sec61 complex. this2 entry contains the large subunit ribosomal proteins.
51c1i1gA_
not modelled 7.8 13
PDB header:transcription
Chain: A: PDB Molecule:transcriptional regulator lrpa;
PDBTitle: crystal structure of the lrp-like transcriptional regulator from the2 archaeon pyrococcus furiosus
52c2mxbA_
not modelled 7.4 26
PDB header:membrane protein
Chain: A: PDB Molecule:erythropoietin receptor;
PDBTitle: structure of the transmembrane domain of the mouse erythropoietin2 receptor
53c5xjyA_
not modelled 7.4 17
PDB header:transport protein
Chain: A: PDB Molecule:atp-binding cassette sub-family a member 1;
PDBTitle: cryo-em structure of human abca1
54c6raoI_
not modelled 7.3 11
PDB header:virus like particle
Chain: I: PDB Molecule:afp11;
PDBTitle: cryo-em structure of the anti-feeding prophage (afp) baseplate, 6-fold2 symmetrised
55c5wtqB_
not modelled 7.1 16
PDB header:chaperone
Chain: B: PDB Molecule:proteasome assembly chaperone 4;
PDBTitle: crystal structure of human proteasome-assembling chaperone pac4
56c2ksfA_
not modelled 7.0 15
PDB header:transferase
Chain: A: PDB Molecule:sensor protein kdpd;
PDBTitle: backbone structure of the membrane domain of e. coli histidine kinase2 receptor kdpd, center for structures of membrane proteins (csmp)3 target 4312c
57d1m56d_
not modelled 6.9 9
Fold:Single transmembrane helix
Superfamily:Bacterial aa3 type cytochrome c oxidase subunit IV
Family:Bacterial aa3 type cytochrome c oxidase subunit IV
58d1f06a2
not modelled 6.9 17
Fold:FwdE/GAPDH domain-like
Superfamily:Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain
Family:Dihydrodipicolinate reductase-like
59c4kbmA_
not modelled 6.7 13
PDB header:transferase/transcription
Chain: A: PDB Molecule:dna-directed rna polymerase subunit beta;
PDBTitle: structure of the mtb card/rnap beta subunit b1-b2 domains complex
60c1rwuA_
not modelled 6.7 14
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:hypothetical upf0250 protein ybed;
PDBTitle: solution structure of conserved protein ybed from e. coli
61d1rwua_
not modelled 6.7 14
Fold:Ferredoxin-like
Superfamily:YbeD/HP0495-like
Family:YbeD-like
62c6ithA_
not modelled 6.6 18
PDB header:membrane protein
Chain: A: PDB Molecule:syndecan-2;
PDBTitle: structure of the transmembrane domain of syndecan 2 in micelles
63c2kncB_
not modelled 6.6 15
PDB header:cell adhesion
Chain: B: PDB Molecule:integrin beta-3;
PDBTitle: platelet integrin alfaiib-beta3 transmembrane-cytoplasmic2 heterocomplex
64c2e7xA_
not modelled 6.4 18
PDB header:transcription regulator
Chain: A: PDB Molecule:150aa long hypothetical transcriptional regulator;
PDBTitle: structure of the lrp/asnc like transcriptional regulator from2 sulfolobus tokodaii 7 complexed with its cognate ligand
65c4a01B_
not modelled 6.4 15
PDB header:hydrolase
Chain: B: PDB Molecule:proton pyrophosphatase;
PDBTitle: crystal structure of the h-translocating pyrophosphatase
66c4j29A_
not modelled 6.3 19
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:engineered protein or258;
PDBTitle: crystal structure of engineered protein. northeast structural genomics2 consortium target or258.
67c2lvwA_
not modelled 6.3 11
PDB header:transferase
Chain: A: PDB Molecule:acetolactate synthase isozyme 1 small subunit;
PDBTitle: solution nmr studies of the dimeric regulatory subunit ilvn of the2 e.coli acetohydroxyacid synthase i (ahas i)
68d1tc3c_
not modelled 6.2 21
Fold:DNA/RNA-binding 3-helical bundle
Superfamily:Homeodomain-like
Family:Recombinase DNA-binding domain
69d1dv0a_
not modelled 6.1 8
Fold:RuvA C-terminal domain-like
Superfamily:UBA-like
Family:UBA domain
70d2joqa1
not modelled 6.1 6
Fold:Ferredoxin-like
Superfamily:YbeD/HP0495-like
Family:HP0495-like
71c5a40C_
not modelled 6.1 16
PDB header:transport protein
Chain: C: PDB Molecule:putative fluoride ion transporter crcb;
PDBTitle: crystal structure of a dual topology fluoride ion channel.
72d3dhwa1
not modelled 6.0 10
Fold:MetI-like
Superfamily:MetI-like
Family:MetI-like
73c4gn0D_
not modelled 6.0 7
PDB header:signaling protein
Chain: D: PDB Molecule:hamp domain of af1503;
PDBTitle: de novo phasing of a hamp-complex using an improved arcimboldo method
74c2jsxA_
not modelled 6.0 27
PDB header:chaperone
Chain: A: PDB Molecule:protein napd;
PDBTitle: solution structure of the e. coli tat proofreading2 chaperone protein napd
75c3n7cB_
not modelled 5.9 15
PDB header:protein transport
Chain: B: PDB Molecule:abr034wp;
PDBTitle: crystal structure of the ran binding domain from the nuclear pore2 complex component nup2 from ashbya gossypii
76d2cfxa2
not modelled 5.8 6
Fold:Ferredoxin-like
Superfamily:Dimeric alpha+beta barrel
Family:Lrp/AsnC-like transcriptional regulator C-terminal domain
77d1ygya3
not modelled 5.7 15
Fold:Ferredoxin-like
Superfamily:ACT-like
Family:Phosphoglycerate dehydrogenase, regulatory (C-terminal) domain
78c3hd7A_
not modelled 5.6 7
PDB header:exocytosis
Chain: A: PDB Molecule:vesicle-associated membrane protein 2;
PDBTitle: helical extension of the neuronal snare complex into the membrane,2 spacegroup c 1 2 1
79c4l6eA_
not modelled 5.5 11
PDB header:ligase, isomerase
Chain: A: PDB Molecule:e3 sumo-protein ligase ranbp2;
PDBTitle: crystal structure of the ranbd1 fourth domain of e3 sumo-protein2 ligase ranbp2. northeast structural genomics consortium (nesg) target3 hr9193b
80c1ib8A_
not modelled 5.5 18
PDB header:nucleic acid binding protein
Chain: A: PDB Molecule:conserved protein sp14.3;
PDBTitle: solution structure and function of a conserved protein2 sp14.3 encoded by an essential streptococcus pneumoniae3 gene
81d1uj4a2
not modelled 5.4 15
Fold:Ferredoxin-like
Superfamily:D-ribose-5-phosphate isomerase (RpiA), lid domain
Family:D-ribose-5-phosphate isomerase (RpiA), lid domain
82c6c6lN_
not modelled 5.4 15
PDB header:membrane protein
Chain: N: PDB Molecule:v0 assembly protein 1;
PDBTitle: yeast vacuolar atpase vo in lipid nanodisc
83c6hrbD_
not modelled 5.4 17
PDB header:membrane protein
Chain: D: PDB Molecule:potassium-transporting atpase kdpf subunit;
PDBTitle: cryo-em structure of the kdpfabc complex in an e2 inward-facing state2 (state 2)
84c5mrwD_
not modelled 5.4 17
PDB header:hydrolase
Chain: D: PDB Molecule:potassium-transporting atpase kdpf subunit;
PDBTitle: structure of the kdpfabc complex
85c5mrwL_
not modelled 5.4 17
PDB header:hydrolase
Chain: L: PDB Molecule:potassium-transporting atpase kdpf subunit;
PDBTitle: structure of the kdpfabc complex
86c5mrwH_
not modelled 5.4 17
PDB header:hydrolase
Chain: H: PDB Molecule:potassium-transporting atpase kdpf subunit;
PDBTitle: structure of the kdpfabc complex
87c5sv0C_
not modelled 5.3 19
PDB header:transport protein
Chain: C: PDB Molecule:biopolymer transport protein exbb;
PDBTitle: structure of the exbb/exbd complex from e. coli at ph 7.0
88c2rmzA_
not modelled 5.3 15
PDB header:cell adhesion
Chain: A: PDB Molecule:integrin beta-3;
PDBTitle: bicelle-embedded integrin beta3 transmembrane segment
89d1ib8a2
not modelled 5.3 18
Fold:Alpha-lytic protease prodomain-like
Superfamily:YhbC-like, N-terminal domain
Family:YhbC-like, N-terminal domain
90c3k07A_
not modelled 5.2 16
PDB header:transport protein
Chain: A: PDB Molecule:cation efflux system protein cusa;
PDBTitle: crystal structure of cusa
91c4czdA_
not modelled 5.2 14
PDB header:lyase
Chain: A: PDB Molecule:putative transcriptional regulator, asnc family;
PDBTitle: sirohaem decarboxylase ahba/b - an enzyme with structural homology2 to the lrp/asnc transcription factor family that is part of the3 alternative haem biosynthesis pathway.
92c6elhA_
not modelled 5.1 12
PDB header:oxidoreductase
Chain: A: PDB Molecule:nitric-oxide reductase;
PDBTitle: low resolution structure of neisseria meningitidis qnor
93d1m0sa2
not modelled 5.1 11
Fold:Ferredoxin-like
Superfamily:D-ribose-5-phosphate isomerase (RpiA), lid domain
Family:D-ribose-5-phosphate isomerase (RpiA), lid domain
94c4l6vM_
not modelled 5.1 29
PDB header:electron transport
Chain: M: PDB Molecule:photosystem i reaction center subunit xii;
PDBTitle: crystal structure of a virus like photosystem i from the2 cyanobacterium synechocystis pcc 6803
95c4l6v7_
not modelled 5.1 29
PDB header:electron transport
Chain: 7: PDB Molecule:photosystem i reaction center subunit xii;
PDBTitle: crystal structure of a virus like photosystem i from the2 cyanobacterium synechocystis pcc 6803
96c5oy0m_
not modelled 5.1 29
PDB header:photosynthesis
Chain: M: PDB Molecule:photosystem i reaction center subunit xii;
PDBTitle: structure of synechocystis photosystem i trimer at 2.5a resolution
97c5oy0M_
not modelled 5.1 29
PDB header:photosynthesis
Chain: M: PDB Molecule:photosystem i reaction center subunit xii;
PDBTitle: structure of synechocystis photosystem i trimer at 2.5a resolution
98c6hqbM_
not modelled 5.1 29
PDB header:photosynthesis
Chain: M: PDB Molecule:photosystem i reaction center subunit xii;
PDBTitle: monomeric cyanobacterial photosystem i

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Transmembrane helix prediction 

Transmembrane helices have been predicted in your sequence to adopt the topology shown below