Phyre Home Retrieve Phyre Job Id
Emailmdejesus@rockefeller.edu
DescriptionRVBD3103c_(-)_3471410_3471847
DateThu Aug 8 16:20:28 BST 2019
Unique Job ID8d5fd477a6eddd34
SequenceVKLSNQKRHW ... Download FASTA
Job Typenormal
Job Expiry

Summary 

Top model
Image coloured by rainbow N → C terminus
Model dimensions (Å):X:32.119 Y:20.795 Z:19.566
Model (left) based on template d1qled_
Top template information
Fold:Single transmembrane helix
Superfamily:Bacterial aa3 type cytochrome c oxidase subunit IV
Family:Bacterial aa3 type cytochrome c oxidase subunit IV
Confidence and coverage
Confidence: 40.7% Coverage: 14%
21 residues ( 14% of your sequence) have been modelled with 40.7% confidence by the single highest scoring template.
You may wish to submit your sequence to Phyrealarm. This will automatically scan your sequence every week for new potential templates as they appear in the Phyre2 library.
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Warning: 54% of your sequence is predicted disordered. Disordered regions cannot be meaningfully predicted.
3D viewing
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Sequence analysis 

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Secondary structure and disorder prediction [Show] 

Domain analysis [Show] 

Detailed template information [Hide] 

 

#
Template Alignment Coverage3D Model Confidence
% i.d. Template Information
1d1qled_
40.7 29
Fold:Single transmembrane helix
Superfamily:Bacterial aa3 type cytochrome c oxidase subunit IV
Family:Bacterial aa3 type cytochrome c oxidase subunit IV
2c5t4oJ_
20.4 17
PDB header:hydrolase
Chain: J: PDB Molecule:atp synthase subunit b;
PDBTitle: autoinhibited e. coli atp synthase state 1
3d1xl4a2
19.9 20
Fold:Voltage-gated potassium channels
Superfamily:Voltage-gated potassium channels
Family:Voltage-gated potassium channels
4c6odm5_
19.8 29
PDB header:viral protein
Chain: 5: PDB Molecule:triplex capsid protein 1;
PDBTitle: herpes simplex virus type 1 (hsv-1) portal vertex-adjacent2 capsid/catc, asymmetric unit
5c6dadD_
18.1 36
PDB header:calcium binding protein/membrane protein
Chain: D: PDB Molecule:voltage-dependent l-type calcium channel subunit alpha-1c;
PDBTitle: 1.65 angstrom crystal structure of the n97i ca/cam:cav1.2 iq domain2 complex
6c6daeD_
17.4 36
PDB header:calcium binding protein/membrane protein
Chain: D: PDB Molecule:voltage-dependent l-type calcium channel subunit alpha-1c;
PDBTitle: 2.0 angstrom crystal structure of the d95v ca/cam:cav1.2 iq domain2 complex
7c5ydnA_
17.2 31
PDB header:viral protein
Chain: A: PDB Molecule:gene product j;
PDBTitle: mu pahge neck subunit
8d1m56d_
17.2 24
Fold:Single transmembrane helix
Superfamily:Bacterial aa3 type cytochrome c oxidase subunit IV
Family:Bacterial aa3 type cytochrome c oxidase subunit IV
9c6daeC_
17.0 36
PDB header:calcium binding protein/membrane protein
Chain: C: PDB Molecule:voltage-dependent l-type calcium channel subunit alpha-1c;
PDBTitle: 2.0 angstrom crystal structure of the d95v ca/cam:cav1.2 iq domain2 complex
10c2ls2A_
15.4 31
PDB header:metal transport
Chain: A: PDB Molecule:high affinity copper uptake protein 1;
PDBTitle: 1h chemical shift assignments for the first transmembrane domain from2 human copper transport 1
11c3u3iA_
15.3 17
PDB header:rna binding protein
Chain: A: PDB Molecule:nucleocapsid protein;
PDBTitle: a rna binding protein from crimean-congo hemorrhagic fever virus
12c6dadC_
15.2 36
PDB header:calcium binding protein/membrane protein
Chain: C: PDB Molecule:voltage-dependent l-type calcium channel subunit alpha-1c;
PDBTitle: 1.65 angstrom crystal structure of the n97i ca/cam:cav1.2 iq domain2 complex
13c2mkaB_
15.0 25
PDB header:immune system
Chain: B: PDB Molecule:toll-like receptor 3;
PDBTitle: spatial structure of the toll-like receptor 3 transmembrane domain in2 the trimeric state
14c2mk9A_
15.0 25
PDB header:immune system
Chain: A: PDB Molecule:toll-like receptor 3;
PDBTitle: spatial structure of the dimeric transmembrane domain of toll-like2 receptor 3
15c2mk9B_
15.0 25
PDB header:immune system
Chain: B: PDB Molecule:toll-like receptor 3;
PDBTitle: spatial structure of the dimeric transmembrane domain of toll-like2 receptor 3
16c2mkaC_
15.0 25
PDB header:immune system
Chain: C: PDB Molecule:toll-like receptor 3;
PDBTitle: spatial structure of the toll-like receptor 3 transmembrane domain in2 the trimeric state
17c2mkaA_
15.0 25
PDB header:immune system
Chain: A: PDB Molecule:toll-like receptor 3;
PDBTitle: spatial structure of the toll-like receptor 3 transmembrane domain in2 the trimeric state
18c2y69W_
14.7 22
PDB header:electron transport
Chain: W: PDB Molecule:cytochrome c oxidase polypeptide 7a1;
PDBTitle: bovine heart cytochrome c oxidase re-refined with molecular oxygen
19c2zkr3_
12.8 25
PDB header:ribosomal protein/rna
Chain: 3: PDB Molecule:60s ribosomal protein l39e;
PDBTitle: structure of a mammalian ribosomal 60s subunit within an 80s complex2 obtained by docking homology models of the rna and proteins into an3 8.7 a cryo-em map
20c5h67C_
12.2 16
PDB header:dna binding protein/cell cycle
Chain: C: PDB Molecule:segregation and condensation protein a;
PDBTitle: crystal structure of the bacillus subtilis smc head domain complexed2 with the cognate scpa c-terminal domain and soaked atp
21c6humQ_
not modelled 11.4 18
PDB header:proton transport
Chain: Q: PDB Molecule:proton-translocating nadh-quinone dehydrogenase subunit q
PDBTitle: structure of the photosynthetic complex i from thermosynechococcus2 elongatus
22c6fkip_
not modelled 10.9 17
PDB header:membrane protein
Chain: P: PDB Molecule:atp synthase subunit c, chloroplastic;
PDBTitle: chloroplast f1fo conformation 3
23c2be6D_
not modelled 10.8 36
PDB header:membrane protein
Chain: D: PDB Molecule:voltage-dependent l-type calcium channel alpha-1c subunit;
PDBTitle: 2.0 a crystal structure of the cav1.2 iq domain-ca/cam complex
24c2dw3A_
not modelled 10.7 32
PDB header:photosynthesis
Chain: A: PDB Molecule:intrinsic membrane protein pufx;
PDBTitle: solution structure of the rhodobacter sphaeroides pufx2 membrane protein
25c3zf7q_
not modelled 10.6 25
PDB header:ribosome
Chain: Q: PDB Molecule:ribosomal protein l15;
PDBTitle: high-resolution cryo-electron microscopy structure of the trypanosoma2 brucei ribosome
26c4a1bB_
not modelled 10.3 13
PDB header:ribosome
Chain: B: PDB Molecule:rpl39;
PDBTitle: t.thermophila 60s ribosomal subunit in complex with2 initiation factor 6. this file contains 26s rrna and3 proteins of molecule 3.
27d1vqo21
not modelled 10.0 27
Fold:Non-globular all-alpha subunits of globular proteins
Superfamily:Ribosomal protein L39e
Family:Ribosomal protein L39e
28c5xnmT_
not modelled 9.8 23
PDB header:membrane protein
Chain: T: PDB Molecule:photosystem ii reaction center protein t;
PDBTitle: structure of unstacked c2s2m2-type psii-lhcii supercomplex from pisum2 sativum
29c5v2sA_
not modelled 9.8 29
PDB header:viral protein
Chain: A: PDB Molecule:envelope glycoprotein b;
PDBTitle: crystal structure of glycoprotein b from herpes simplex virus type i
30c3j21f_
not modelled 9.6 25
PDB header:ribosome
Chain: F: PDB Molecule:50s ribosomal protein l6p;
PDBTitle: promiscuous behavior of proteins in archaeal ribosomes revealed by2 cryo-em: implications for evolution of eukaryotic ribosomes (50s3 ribosomal proteins)
31c5z62J_
not modelled 9.6 7
PDB header:electron transport
Chain: J: PDB Molecule:cytochrome c oxidase subunit 7a2, mitochondrial;
PDBTitle: structure of human cytochrome c oxidase
32d1q90r_
not modelled 9.3 26
Fold:Single transmembrane helix
Superfamily:ISP transmembrane anchor
Family:ISP transmembrane anchor
33c1q90R_
not modelled 9.3 26
PDB header:photosynthesis
Chain: R: PDB Molecule:cytochrome b6-f complex iron-sulfur subunit;
PDBTitle: structure of the cytochrome b6f (plastohydroquinone : plastocyanin2 oxidoreductase) from chlamydomonas reinhardtii
34c5mdxT_
not modelled 9.2 23
PDB header:photosynthesis
Chain: T: PDB Molecule:photosystem ii reaction center protein t;
PDBTitle: cryo-em structure of the psii supercomplex from arabidopsis thaliana
35c5mdxt_
not modelled 9.2 23
PDB header:photosynthesis
Chain: T: PDB Molecule:photosystem ii reaction center protein t;
PDBTitle: cryo-em structure of the psii supercomplex from arabidopsis thaliana
36c3jcut_
not modelled 9.1 23
PDB header:membrane protein
Chain: T: PDB Molecule:photosystem ii reaction center protein tc;
PDBTitle: cryo-em structure of spinach psii-lhcii supercomplex at 3.2 angstrom2 resolution
37c3jcuT_
not modelled 9.1 23
PDB header:membrane protein
Chain: T: PDB Molecule:photosystem ii reaction center protein tc;
PDBTitle: cryo-em structure of spinach psii-lhcii supercomplex at 3.2 angstrom2 resolution
38c3izso_
not modelled 8.9 13
PDB header:ribosome
Chain: O: PDB Molecule:60s ribosomal protein rpl28 (l15p);
PDBTitle: localization of the large subunit ribosomal proteins into a 6.1 a2 cryo-em map of saccharomyces cerevisiae translating 80s ribosome
39c3i0mA_
not modelled 8.9 38
PDB header:cell cycle
Chain: A: PDB Molecule:dna repair and telomere maintenance protein nbs1;
PDBTitle: structure of the s. pombe nbs1 fha/brct-repeat domain
40c1jdmA_
not modelled 8.0 39
PDB header:membrane protein
Chain: A: PDB Molecule:sarcolipin;
PDBTitle: nmr structure of sarcolipin
41d1v54j_
not modelled 8.0 7
Fold:Single transmembrane helix
Superfamily:Mitochondrial cytochrome c oxidase subunit VIIa
Family:Mitochondrial cytochrome c oxidase subunit VIIa
42d2q07a3
not modelled 7.8 44
Fold:Cystatin-like
Superfamily:Pre-PUA domain
Family:AF0587 pre C-terminal domain-like
43d2p7tc1
not modelled 7.5 31
Fold:Voltage-gated potassium channels
Superfamily:Voltage-gated potassium channels
Family:Voltage-gated potassium channels
44c2j7aC_
not modelled 7.3 43
PDB header:oxidoreductase
Chain: C: PDB Molecule:cytochrome c quinol dehydrogenase nrfh;
PDBTitle: crystal structure of cytochrome c nitrite reductase nrfha2 complex from desulfovibrio vulgaris
45d1ehkb2
not modelled 6.9 23
Fold:Transmembrane helix hairpin
Superfamily:Cytochrome c oxidase subunit II-like, transmembrane region
Family:Cytochrome c oxidase subunit II-like, transmembrane region
46c5t42A_
not modelled 6.3 25
PDB header:viral protein
Chain: A: PDB Molecule:envelope glycoprotein;
PDBTitle: structure of the ebola virus envelope protein mper/tm domain and its2 interaction with the fusion loop explains their fusion activity
47c2kegA_
not modelled 6.2 38
PDB header:antimicrobial protein
Chain: A: PDB Molecule:plnk;
PDBTitle: nmr structure of plantaricin k in dpc-micelles
48c1jsuC_
not modelled 5.9 31
PDB header:complex (transferase/cyclin/inhibitor)
Chain: C: PDB Molecule:p27;
PDBTitle: p27(kip1)/cyclin a/cdk2 complex
49c5no8A_
not modelled 5.8 35
PDB header:lyase
Chain: A: PDB Molecule:baccell_00875;
PDBTitle: polysaccharide lyase baccell_00875
50c2ev2B_
not modelled 5.7 15
PDB header:lyase
Chain: B: PDB Molecule:hypothetical protein rv1264/mt1302;
PDBTitle: structure of rv1264n, the regulatory domain of the mycobacterial2 adenylyl cylcase rv1264, at ph 8.5
51c5mg3D_
not modelled 5.5 7
PDB header:chaperone
Chain: D: PDB Molecule:protein translocase subunit secd;
PDBTitle: em fitted model of bacterial holo-translocon
52c2ki9A_
not modelled 5.5 37
PDB header:membrane protein
Chain: A: PDB Molecule:cannabinoid receptor 2;
PDBTitle: human cannabinoid receptor-2 helix 6
53d1uptb_
not modelled 5.4 21
Fold:GRIP domain
Superfamily:GRIP domain
Family:GRIP domain
54c6fosK_
not modelled 5.4 24
PDB header:photosynthesis
Chain: K: PDB Molecule:photosystem i reaction center subunit x;
PDBTitle: cyanidioschyzon merolae photosystem i
55d1t98a2
not modelled 5.4 14
Fold:STAT-like
Superfamily:MukF C-terminal domain-like
Family:MukF C-terminal domain-like
56c3rgbA_
not modelled 5.3 23
PDB header:oxidoreductase
Chain: A: PDB Molecule:methane monooxygenase subunit b2;
PDBTitle: crystal structure of particulate methane monooxygenase from2 methylococcus capsulatus (bath)
57c1yewI_
not modelled 5.3 23
PDB header:oxidoreductase, membrane protein
Chain: I: PDB Molecule:particulate methane monooxygenase, b subunit;
PDBTitle: crystal structure of particulate methane monooxygenase
58c4zy8D_
not modelled 5.2 75
PDB header:transport protein
Chain: D: PDB Molecule:protein lst4;
PDBTitle: k. lactis lst4 longin domain
59c2hw0A_
not modelled 5.2 15
PDB header:hydrolase, replication
Chain: A: PDB Molecule:replicase;
PDBTitle: nmr solution structure of the nuclease domain from the2 replicator initiator protein from porcine circovirus pcv2
60c3rlbB_
not modelled 5.2 14
PDB header:thiamine-binding protein
Chain: B: PDB Molecule:thit;
PDBTitle: crystal structure at 2.0 a of the s-component for thiamin from an ecf-2 type abc transporter
61d3c07a2
not modelled 5.1 25
Fold:Tetracyclin repressor-like, C-terminal domain
Superfamily:Tetracyclin repressor-like, C-terminal domain
Family:Tetracyclin repressor-like, C-terminal domain
62c3on3B_
not modelled 5.1 24
PDB header:oxidoreductase
Chain: B: PDB Molecule:keto/oxoacid ferredoxin oxidoreductase, gamma subunit;
PDBTitle: the crystal structure of keto/oxoacid ferredoxin oxidoreductase, gamma2 subunit from geobacter sulfurreducens pca
63c5x5yF_
not modelled 5.1 15
PDB header:membrane protein
Chain: F: PDB Molecule:uncharacterized protein;
PDBTitle: a membrane protein complex

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Transmembrane helix prediction 

Transmembrane helices have been predicted in your sequence to adopt the topology shown below