Phyre Home Retrieve Phyre Job Id
Emailmdejesus@rockefeller.edu
DescriptionRVBD3114_(-)_3480756_3481286
DateThu Aug 8 16:20:29 BST 2019
Unique Job ID86b3484f9dcf70a5
SequenceVVAARLPFGW ... Download FASTA
Job Typenormal
Job Expiry

Summary 

Top model
Image coloured by rainbow N → C terminus
Model dimensions (Å):X:36.469 Y:37.999 Z:47.970
Model (left) based on template c2nx8A_
Top template information
PDB header:hydrolase
Chain: A: PDB Molecule:trna-specific adenosine deaminase;
PDBTitle: the crystal structure of the trna-specific adenosine deaminase from2 streptococcus pyogenes
Confidence and coverage
Confidence:100.0% Coverage: 83%
146 residues ( 83% of your sequence) have been modelled with 100.0% confidence by the single highest scoring template.
3D viewing
Interactive 3D view in JSmol
For other options to view your downloaded structure offline see the FAQ

Sequence analysis 

Download FASTA version

Secondary structure and disorder prediction [Show] 

Domain analysis [Show] 

Detailed template information [Hide] 

 

#
Template Alignment Coverage3D Model Confidence
% i.d. Template Information
1c2nx8A_



100.0 21
PDB header:hydrolase
Chain: A: PDB Molecule:trna-specific adenosine deaminase;
PDBTitle: the crystal structure of the trna-specific adenosine deaminase from2 streptococcus pyogenes
2d2g84a1



100.0 23
Fold:Cytidine deaminase-like
Superfamily:Cytidine deaminase-like
Family:Deoxycytidylate deaminase-like
3d2b3ja1



100.0 23
Fold:Cytidine deaminase-like
Superfamily:Cytidine deaminase-like
Family:Deoxycytidylate deaminase-like
4d1z3aa1



100.0 26
Fold:Cytidine deaminase-like
Superfamily:Cytidine deaminase-like
Family:Deoxycytidylate deaminase-like
5c3ocqA_



100.0 26
PDB header:hydrolase
Chain: A: PDB Molecule:putative cytosine/adenosine deaminase;
PDBTitle: crystal structure of trna-specific adenosine deaminase from salmonella2 enterica
6d1wwra1



100.0 23
Fold:Cytidine deaminase-like
Superfamily:Cytidine deaminase-like
Family:Deoxycytidylate deaminase-like
7c3dh1D_



100.0 22
PDB header:hydrolase
Chain: D: PDB Molecule:trna-specific adenosine deaminase 2;
PDBTitle: crystal structure of human trna-specific adenosine-34 deaminase2 subunit adat2
8c5xkrA_



100.0 24
PDB header:hydrolase
Chain: A: PDB Molecule:cmp/dcmp deaminase, zinc-binding protein;
PDBTitle: crystal structure of msmeg3575 in complex with benzoguanamine
9d1p6oa_



100.0 17
Fold:Cytidine deaminase-like
Superfamily:Cytidine deaminase-like
Family:Deoxycytidylate deaminase-like
10d2b3za2



100.0 19
Fold:Cytidine deaminase-like
Superfamily:Cytidine deaminase-like
Family:Deoxycytidylate deaminase-like
11c2d5nB_



100.0 19
PDB header:hydrolase, oxidoreductase
Chain: B: PDB Molecule:riboflavin biosynthesis protein ribd;
PDBTitle: crystal structure of a bifunctional deaminase and reductase2 involved in riboflavin biosynthesis
12d1wkqa_



100.0 23
Fold:Cytidine deaminase-like
Superfamily:Cytidine deaminase-like
Family:Deoxycytidylate deaminase-like
13d2a8na1



100.0 30
Fold:Cytidine deaminase-like
Superfamily:Cytidine deaminase-like
Family:Deoxycytidylate deaminase-like
14c2o7pA_



100.0 21
PDB header:hydrolase, oxidoreductase
Chain: A: PDB Molecule:riboflavin biosynthesis protein ribd;
PDBTitle: the crystal structure of ribd from escherichia coli in complex with2 the oxidised nadp+ cofactor in the active site of the reductase3 domain
15c2hxvA_



100.0 22
PDB header:biosynthetic protein
Chain: A: PDB Molecule:diaminohydroxyphosphoribosylaminopyrimidine deaminase/ 5-
PDBTitle: crystal structure of a diaminohydroxyphosphoribosylaminopyrimidine2 deaminase/ 5-amino-6-(5-phosphoribosylamino)uracil reductase (tm1828)3 from thermotoga maritima at 1.80 a resolution
16c3zpgA_



100.0 19
PDB header:hydrolase
Chain: A: PDB Molecule:ribd;
PDBTitle: acinetobacter baumannii ribd, form 2
17d2hxva2



100.0 22
Fold:Cytidine deaminase-like
Superfamily:Cytidine deaminase-like
Family:Deoxycytidylate deaminase-like
18c5jfyC_



100.0 30
PDB header:hydrolase
Chain: C: PDB Molecule:deoxycytidine deaminase;
PDBTitle: crystal structure of a plant cytidine deaminase
19c4p9eA_



100.0 22
PDB header:hydrolase
Chain: A: PDB Molecule:deoxycytidylate deaminase;
PDBTitle: crystal structure of dcmp deaminase from the cyanophage s-tim5 in apo2 form
20c2w4lC_



100.0 18
PDB header:hydrolase
Chain: C: PDB Molecule:deoxycytidylate deaminase;
PDBTitle: human dcmp deaminase
21c2hvwC_



not modelled 100.0 22
PDB header:hydrolase
Chain: C: PDB Molecule:deoxycytidylate deaminase;
PDBTitle: crystal structure of dcmp deaminase from streptococcus mutans
22d1vq2a_



not modelled 99.9 20
Fold:Cytidine deaminase-like
Superfamily:Cytidine deaminase-like
Family:Deoxycytidylate deaminase-like
23d1r5ta_



not modelled 98.2 15
Fold:Cytidine deaminase-like
Superfamily:Cytidine deaminase-like
Family:Cytidine deaminase
24d1mq0a_



not modelled 98.1 19
Fold:Cytidine deaminase-like
Superfamily:Cytidine deaminase-like
Family:Cytidine deaminase
25d2fr5a1



not modelled 98.1 20
Fold:Cytidine deaminase-like
Superfamily:Cytidine deaminase-like
Family:Cytidine deaminase
26c3ijfX_



not modelled 98.0 23
PDB header:hydrolase
Chain: X: PDB Molecule:cytidine deaminase;
PDBTitle: crystal structure of cytidine deaminase from mycobacterium2 tuberculosis
27d1uwza_



not modelled 98.0 21
Fold:Cytidine deaminase-like
Superfamily:Cytidine deaminase-like
Family:Cytidine deaminase
28d2d30a1



not modelled 97.9 23
Fold:Cytidine deaminase-like
Superfamily:Cytidine deaminase-like
Family:Cytidine deaminase
29d1alna2



not modelled 97.8 19
Fold:Cytidine deaminase-like
Superfamily:Cytidine deaminase-like
Family:Cytidine deaminase
30d1alna1



not modelled 97.8 23
Fold:Cytidine deaminase-like
Superfamily:Cytidine deaminase-like
Family:Cytidine deaminase
31c3r2nC_



not modelled 97.8 16
PDB header:hydrolase
Chain: C: PDB Molecule:cytidine deaminase;
PDBTitle: crystal structure of cytidine deaminase from mycobacterium leprae
32c3dmoD_



not modelled 97.7 22
PDB header:hydrolase
Chain: D: PDB Molecule:cytidine deaminase;
PDBTitle: 1.6 a crystal structure of cytidine deaminase from burkholderia2 pseudomallei
33c4eg2G_



not modelled 97.6 14
PDB header:hydrolase
Chain: G: PDB Molecule:cytidine deaminase;
PDBTitle: 2.2 angstrom crystal structure of cytidine deaminase from vibrio2 cholerae in complex with zinc and uridine
34c3b8fB_



not modelled 97.4 11
PDB header:hydrolase
Chain: B: PDB Molecule:putative blasticidin s deaminase;
PDBTitle: crystal structure of the cytidine deaminase from bacillus anthracis
35c1alnA_



not modelled 97.4 18
PDB header:hydrolase
Chain: A: PDB Molecule:cytidine deaminase;
PDBTitle: crystal structure of cytidine deaminase complexed with 3-deazacytidine
36c3oj6C_



not modelled 97.2 18
PDB header:hydrolase
Chain: C: PDB Molecule:blasticidin-s deaminase;
PDBTitle: crystal structure of blasticidin s deaminase from coccidioides immitis
37d2z3ga1



not modelled 97.2 16
Fold:Cytidine deaminase-like
Superfamily:Cytidine deaminase-like
Family:Cytidine deaminase
38c3vowB_



not modelled 95.8 20
PDB header:hydrolase
Chain: B: PDB Molecule:probable dna dc->du-editing enzyme apobec-3c;
PDBTitle: crystal structure of the human apobec3c having hiv-1 vif-binding2 interface
39c5k83C_



not modelled 95.6 17
PDB header:hydrolase
Chain: C: PDB Molecule:apolipoprotein b mrna editing enzyme, catalytic peptide-
PDBTitle: crystal structure of a primate apobec3g n-domain, in complex with2 ssdna
40c3g8qA_



not modelled 95.0 22
PDB header:rna binding protein
Chain: A: PDB Molecule:predicted rna-binding protein, contains thump
PDBTitle: a cytidine deaminase edits c-to-u in transfer rnas in2 archaea
41c5tkmA_



not modelled 94.8 19
PDB header:hydrolase
Chain: A: PDB Molecule:dna dc->du-editing enzyme apobec-3b;
PDBTitle: crystal structure of human apobec3b n-terminal domain
42c6b0bE_



not modelled 93.4 22
PDB header:hydrolase/rna
Chain: E: PDB Molecule:apobec3h;
PDBTitle: crystal structure of human apobec3h
43c2nytB_



not modelled 92.8 24
PDB header:hydrolase
Chain: B: PDB Molecule:probable c->u-editing enzyme apobec-2;
PDBTitle: the apobec2 crystal structure and functional implications2 for aid
44c2mzzA_



not modelled 90.8 19
PDB header:hydrolase, antiviral protein
Chain: A: PDB Molecule:apolipoprotein b mrna-editing enzyme, catalytic
PDBTitle: nmr structure of apobec3g ntd variant, sntd
45c2kboA_



not modelled 90.6 21
PDB header:hydrolase
Chain: A: PDB Molecule:dna dc->du-editing enzyme apobec-3g;
PDBTitle: structure, interaction, and real-time monitoring of the2 enzymatic reaction of wild type apobec3g
46c6bwyA_



not modelled 89.0 24
PDB header:hydrolase
Chain: A: PDB Molecule:protection of telomeres protein 1, dna dc->du-editing
PDBTitle: dna substrate selection by apobec3g
47c2m65A_



not modelled 87.2 23
PDB header:hydrolase
Chain: A: PDB Molecule:probable dna dc->du-editing enzyme apobec-3a;
PDBTitle: nmr structure of human restriction factor apobec3a
48c6bwsA_



not modelled 59.9 16
PDB header:unknown function
Chain: A: PDB Molecule:glycolate utilization protein;
PDBTitle: crystal structure of efga from methylobacterium extorquens
49c6f5fC_



not modelled 52.2 18
PDB header:dna binding protein
Chain: C: PDB Molecule:poly [adp-ribose] polymerase 2;
PDBTitle: structure of artd2/parp2 wgr domain bound to double strand dna with 52 nucleotide overhang and 5'phosphate
50c2eocA_



not modelled 51.0 10
PDB header:transferase
Chain: A: PDB Molecule:poly [adp-ribose] polymerase 3;
PDBTitle: solution structure of the wgr domain from human poly [adp-2 ribose] polymerase-3
51d2cr9a1



not modelled 50.4 9
Fold:WGR domain-like
Superfamily:WGR domain-like
Family:WGR domain
52d2hi7b1



not modelled 45.2 43
Fold:Bromodomain-like
Superfamily:DsbB-like
Family:DsbB-like
53c3e9jC_



not modelled 45.2 43
PDB header:oxidoreductase
Chain: C: PDB Molecule:thiol/disulfide oxidoreductase dsbb;
PDBTitle: structure of the charge-transfer intermediate of the2 transmembrane redox catalyst dsbb
54c2k74A_



not modelled 42.3 29
PDB header:membrane protein, oxidoreductase
Chain: A: PDB Molecule:disulfide bond formation protein b;
PDBTitle: solution nmr structure of dsbb-ubiquinone complex
55c3u3gA_



not modelled 35.4 20
PDB header:hydrolase
Chain: A: PDB Molecule:ribonuclease h;
PDBTitle: structure of lc11-rnase h1 isolated from compost by metagenomic2 approach: insight into the structural bases for unusual enzymatic3 properties of sto-rnase h1
56d1zbfa1



not modelled 35.1 15
Fold:Ribonuclease H-like motif
Superfamily:Ribonuclease H-like
Family:Ribonuclease H
57c4nkpD_



not modelled 33.0 14
PDB header:chaperone
Chain: D: PDB Molecule:putative extracellular heme-binding protein;
PDBTitle: crystal structure of a putative extracellular heme-binding protein2 (despig_02683) from desulfovibrio piger atcc 29098 at 1.24 a3 resolution
58d1rila_



not modelled 32.8 19
Fold:Ribonuclease H-like motif
Superfamily:Ribonuclease H-like
Family:Ribonuclease H
59c3wwxA_



not modelled 29.4 25
PDB header:hydrolase
Chain: A: PDB Molecule:s12 family peptidase;
PDBTitle: crystal structure of d-stereospecific amidohydrolase from streptomyces2 sp. 82f2
60d1vdda_



not modelled 28.1 30
Fold:Recombination protein RecR
Superfamily:Recombination protein RecR
Family:Recombination protein RecR
61c6hihB_



not modelled 26.4 37
PDB header:oxidoreductase
Chain: B: PDB Molecule:cytochrome c;
PDBTitle: cytochrome c prime beta from methylococcus capsulatus (bath)
62c1vddC_



not modelled 26.2 30
PDB header:recombination
Chain: C: PDB Molecule:recombination protein recr;
PDBTitle: crystal structure of recombinational repair protein recr
63d2a2la1



not modelled 24.7 10
Fold:Profilin-like
Superfamily:GlcG-like
Family:GlcG-like
64c5b0rA_



not modelled 24.6 21
PDB header:transferase
Chain: A: PDB Molecule:lin0857 protein;
PDBTitle: beta-1,2-mannobiose phosphorylase from listeria innocua - beta-1,2-2 mannobiose complex
65c3ic4A_



not modelled 23.1 14
PDB header:oxidoreductase
Chain: A: PDB Molecule:glutaredoxin (grx-1);
PDBTitle: the crystal structure of the glutaredoxin(grx-1) from archaeoglobus2 fulgidus
66c5z2vB_



not modelled 23.0 33
PDB header:dna binding protein
Chain: B: PDB Molecule:recombination protein recr;
PDBTitle: crystal structure of recr from pseudomonas aeruginosa pao1
67d1jl1a_



not modelled 22.5 21
Fold:Ribonuclease H-like motif
Superfamily:Ribonuclease H-like
Family:Ribonuclease H
68c3fpvC_



not modelled 19.8 14
PDB header:heme binding protein
Chain: C: PDB Molecule:extracellular haem-binding protein;
PDBTitle: crystal structure of hbps
69c1zy7A_



not modelled 18.1 24
PDB header:hydrolase
Chain: A: PDB Molecule:rna-specific adenosine deaminase b1, isoform
PDBTitle: crystal structure of the catalytic domain of an adenosine2 deaminase that acts on rna (hadar2) bound to inositol3 hexakisphosphate (ihp)
70c4tr1A_



not modelled 18.0 29
PDB header:oxidoreductase
Chain: A: PDB Molecule:glutaredoxin 3;
PDBTitle: crystal structure of gsh-bound cgrx2/c15s
71c3l48B_



not modelled 15.7 25
PDB header:transport protein
Chain: B: PDB Molecule:outer membrane usher protein papc;
PDBTitle: crystal structure of the c-terminal domain of the papc usher
72c3ve5D_



not modelled 15.7 20
PDB header:recombination
Chain: D: PDB Molecule:recombination protein recr;
PDBTitle: structure of recombination mediator protein recr16-196 deletion mutant
73c3ef5A_



not modelled 15.4 18
PDB header:hydrolase
Chain: A: PDB Molecule:probable pyrophosphohydrolase;
PDBTitle: structure of the rna pyrophosphohydrolase bdrpph in complex with dgtp
74c3h08B_



not modelled 13.7 21
PDB header:hydrolase
Chain: B: PDB Molecule:rnh (ribonuclease h);
PDBTitle: crystal structure of the ribonuclease h1 from chlorobium2 tepidum
75c2kq2A_



not modelled 13.3 7
PDB header:hydrolase
Chain: A: PDB Molecule:ribonuclease h-related protein;
PDBTitle: solution nmr structure of the apo form of a ribonuclease h2 domain of protein dsy1790 from desulfitobacterium3 hafniense, northeast structural genomics target dhr1a
76c2muqA_



not modelled 13.3 50
PDB header:ubiquitin binding protein
Chain: A: PDB Molecule:fanconi anemia-associated protein of 20 kda;
PDBTitle: solution structure of the human faap20 ubz
77d1h75a_



not modelled 13.0 16
Fold:Thioredoxin fold
Superfamily:Thioredoxin-like
Family:Thioltransferase
78c2murA_



not modelled 13.0 50
PDB header:protein binding
Chain: A: PDB Molecule:fanconi anemia-associated protein of 20 kda;
PDBTitle: solution structure of the human faap20 ubz-ubiquitin complex
79d1ttza_



not modelled 12.7 27
Fold:Thioredoxin fold
Superfamily:Thioredoxin-like
Family:Thioltransferase
80c2rsoA_



not modelled 12.6 19
PDB header:transcription
Chain: A: PDB Molecule:chromatin-associated protein swi6;
PDBTitle: solution structure of the chromodomain of swi6
81c2m1cA_



not modelled 11.8 31
PDB header:hydrolase
Chain: A: PDB Molecule:dhh subfamily 1 protein;
PDBTitle: haddock structure of gtyybt pas homodimer
82c4jfcA_



not modelled 11.8 13
PDB header:lyase
Chain: A: PDB Molecule:enoyl-coa hydratase;
PDBTitle: crystal structure of a enoyl-coa hydratase from polaromonas sp. js666
83c3hstD_



not modelled 11.6 14
PDB header:hydrolase
Chain: D: PDB Molecule:protein rv2228c/mt2287;
PDBTitle: n-terminal rnase h domain of rv2228c from mycobacterium tuberculosis2 as a fusion protein with maltose binding protein
84d1xfna1



not modelled 11.3 33
Fold:Profilin-like
Superfamily:PYP-like sensor domain (PAS domain)
Family:PYP-like
85c3watA_



not modelled 11.2 16
PDB header:transferase
Chain: A: PDB Molecule:4-o-beta-d-mannosyl-d-glucose phosphorylase;
PDBTitle: crystal structure of 4-o-beta-d-mannosyl-d-glucose phosphorylase mgp2 complexed with man+glc
86c2pbyB_



not modelled 10.8 26
PDB header:hydrolase
Chain: B: PDB Molecule:glutaminase;
PDBTitle: probable glutaminase from geobacillus kaustophilus hta426
87c3ld0Q_



not modelled 10.5 63
PDB header:gene regulation
Chain: Q: PDB Molecule:inhibitor of trap, regulated by t-box (trp) sequence rtpa;
PDBTitle: crystal structure of b.licheniformis anti-trap protein, an antagonist2 of trap-rna interactions
88c3nznA_



not modelled 10.3 16
PDB header:oxidoreductase
Chain: A: PDB Molecule:glutaredoxin;
PDBTitle: the crystal structure of the glutaredoxin from methanosarcina mazei2 go1
89c6hiuA_



not modelled 10.0 42
PDB header:oxidoreductase
Chain: A: PDB Molecule:cytochrome p460;
PDBTitle: cytochrome p460 from methylococcus capsulatus (bath)
90c4orlA_



not modelled 9.6 7
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:uncharacterized protein;
PDBTitle: crystal structure of a duf4783 family protein (bacova_04304) from2 bacteroides ovatus atcc 8483 at 1.40 a resolution
91c1avoA_



not modelled 9.4 25
PDB header:proteasome activator
Chain: A: PDB Molecule:11s regulator;
PDBTitle: proteasome activator reg(alpha)
92c2kncA_



not modelled 9.1 14
PDB header:cell adhesion
Chain: A: PDB Molecule:integrin alpha-iib;
PDBTitle: platelet integrin alfaiib-beta3 transmembrane-cytoplasmic2 heterocomplex
93d1nuia2



not modelled 8.6 27
Fold:Rubredoxin-like
Superfamily:Zinc beta-ribbon
Family:DNA primase zinc finger
94c4ouqA_



not modelled 8.4 0
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:uncharacterized protein;
PDBTitle: crystal structure of a duf4783 family protein (bf1468) from2 bacteroides fragilis ych46 at 1.55 a resolution
95c5oi9A_



not modelled 8.2 25
PDB header:protein binding
Chain: A: PDB Molecule:putative uncharacterized protein;
PDBTitle: trichoplax adhaerens stil n-terminal domain
96c5yt6B_



not modelled 8.1 80
PDB header:protein binding
Chain: B: PDB Molecule:tax1-binding protein 1;
PDBTitle: crystal structure of tax1bp1 ubz2 in complex with mono-ubiquitin
97c4wyhA_



not modelled 8.0 17
PDB header:replication
Chain: A: PDB Molecule:uncharacterized protein;
PDBTitle: crystal structure of prix from the hyperthermophilic archaeon2 sulfolobus solfataricus
98c3tawA_



not modelled 7.5 13
PDB header:hydrolase
Chain: A: PDB Molecule:hypothetical glycoside hydrolase;
PDBTitle: crystal structure of a putative glycoside hydrolase (bdi_3141) from2 parabacteroides distasonis atcc 8503 at 1.70 a resolution
99c3qmxA_



not modelled 7.5 13
PDB header:electron transport
Chain: A: PDB Molecule:glutaredoxin a;
PDBTitle: x-ray crystal structure of synechocystis sp. pcc 6803 glutaredoxin a

Binding site prediction 

Due to computational demand, binding site predictions are not run for batch jobs

If you want to predict binding sites, please manually submit your model of choice to 3DLigandSite