Phyre Home Retrieve Phyre Job Id
Emailmdejesus@rockefeller.edu
DescriptionRVBD3118_(sseC1)_3484806_3485108
DateThu Aug 8 16:20:30 BST 2019
Unique Job ID9029bec1170deb67
SequenceMCSGPKQGLT ... Download FASTA
Job Typenormal
Job Expiry

Summary 

Top model
Image coloured by rainbow N → C terminus
Model dimensions (Å):X:29.987 Y:29.763 Z:34.149
Model (left) based on template c1h8lA_
Top template information
PDB header:carboxypeptidase
Chain: A: PDB Molecule:carboxypeptidase gp180 residues 503-882;
PDBTitle: duck carboxypeptidase d domain ii in complex with gemsa
Confidence and coverage
Confidence: 97.6% Coverage: 74%
74 residues ( 74% of your sequence) have been modelled with 97.6% confidence by the single highest scoring template.
Additional confident templates have been detected (see Domain analysis) which cover other regions of your sequence.
100 residues (100%) could be modelled at >90% confidence using multiple-templates.
You may wish to try resubmitting your sequence in "intensive" mode to model more of your sequence.
3D viewing
Interactive 3D view in JSmol
For other options to view your downloaded structure offline see the FAQ

Sequence analysis 

Download FASTA version

Secondary structure and disorder prediction [Show] 

Domain analysis [Show] 

Detailed template information [Hide] 

 

#
Template Alignment Coverage3D Model Confidence
% i.d. Template Information
1c1h8lA_



97.6 20
PDB header:carboxypeptidase
Chain: A: PDB Molecule:carboxypeptidase gp180 residues 503-882;
PDBTitle: duck carboxypeptidase d domain ii in complex with gemsa
2d1h8la1



97.5 20
Fold:Prealbumin-like
Superfamily:Carboxypeptidase regulatory domain-like
Family:Carboxypeptidase regulatory domain
3c3mn8A_



97.3 23
PDB header:hydrolase
Chain: A: PDB Molecule:lp15968p;
PDBTitle: structure of drosophila melanogaster carboxypeptidase d isoform 1b2 short
4c2nsmA_



97.3 21
PDB header:hydrolase
Chain: A: PDB Molecule:carboxypeptidase n catalytic chain;
PDBTitle: crystal structure of the human carboxypeptidase n (kininase i)2 catalytic domain
5c5aq0B_



97.0 20
PDB header:hydrolase
Chain: B: PDB Molecule:carboxypeptidase d;
PDBTitle: the structure of the transthyretin-like domain of the first2 catalytic domain of the human carboxypeptidase d
6c1uwyA_



96.4 16
PDB header:hydrolase
Chain: A: PDB Molecule:carboxypeptidase m;
PDBTitle: crystal structure of human carboxypeptidase m
7d3pccm_



96.3 20
Fold:Prealbumin-like
Superfamily:Aromatic compound dioxygenase
Family:Aromatic compound dioxygenase
8d1uwya1



96.1 19
Fold:Prealbumin-like
Superfamily:Carboxypeptidase regulatory domain-like
Family:Carboxypeptidase regulatory domain
9c4ilvB_



95.9 15
PDB header:oxidoreductase
Chain: B: PDB Molecule:intradiol ring-cleavage dioxygenase;
PDBTitle: structure of the dioxygenase domain of sacte_2871, a novel dioxygenase2 carbohydrate-binding protein fusion from the cellulolytic bacterium3 streptomyces sp. sirexaa-e
10c3n9tA_



95.7 21
PDB header:oxidoreductase
Chain: A: PDB Molecule:pnpc;
PDBTitle: cryatal structure of hydroxyquinol 1,2-dioxygenase from pseudomonas2 putida dll-e4
11d2burb1



95.4 19
Fold:Prealbumin-like
Superfamily:Aromatic compound dioxygenase
Family:Aromatic compound dioxygenase
12d1nkga1



95.3 15
Fold:Prealbumin-like
Superfamily:Starch-binding domain-like
Family:Rhamnogalacturonase B, RhgB, middle domain
13c2xsuA_



95.1 18
PDB header:oxidoreductase
Chain: A: PDB Molecule:catechol 1,2 dioxygenase;
PDBTitle: crystal structure of the a72g mutant of acinetobacter2 radioresistens catechol 1,2 dioxygenase
14c2azqA_



95.1 22
PDB header:oxidoreductase
Chain: A: PDB Molecule:catechol 1,2-dioxygenase;
PDBTitle: crystal structure of catechol 1,2-dioxygenase from pseudomonas arvilla2 c-1
15c1tmxA_



94.8 23
PDB header:oxidoreductase
Chain: A: PDB Molecule:hydroxyquinol 1,2-dioxygenase;
PDBTitle: crystal structure of hydroxyquinol 1,2-dioxygenase from nocardioides2 simplex 3e
16c3th1C_



94.7 25
PDB header:oxidoreductase
Chain: C: PDB Molecule:chlorocatechol 1,2-dioxygenase;
PDBTitle: crystal structure of chlorocatechol 1,2-dioxygenase from pseudomonas2 putida
17c2boyC_



94.3 17
PDB header:oxidoreductase
Chain: C: PDB Molecule:3-chlorocatechol 1,2-dioxygenase;
PDBTitle: crystal structure of 3-chlorocatechol 1,2-dioxygenase from rhodococcus2 opacus 1cp
18d1s9aa_



94.2 23
Fold:Prealbumin-like
Superfamily:Aromatic compound dioxygenase
Family:Aromatic compound dioxygenase
19c5td3B_



93.3 38
PDB header:oxidoreductase
Chain: B: PDB Molecule:catechol 1,2-dioxygenase;
PDBTitle: crystal structure of catechol 1,2-dioxygenase from burkholderia2 vietnamiensis
20c3hj8A_



93.3 28
PDB header:oxidoreductase
Chain: A: PDB Molecule:catechol 1,2-dioxygenase;
PDBTitle: crystal structure determination of catechol 1,2-dioxygenase from2 rhodococcus opacus 1cp in complex with 4-chlorocatechol
21d3pcca_



not modelled 93.0 21
Fold:Prealbumin-like
Superfamily:Aromatic compound dioxygenase
Family:Aromatic compound dioxygenase
22d1dmha_



not modelled 92.8 17
Fold:Prealbumin-like
Superfamily:Aromatic compound dioxygenase
Family:Aromatic compound dioxygenase
23c3kptA_



not modelled 92.7 18
PDB header:cell adhesion
Chain: A: PDB Molecule:collagen adhesion protein;
PDBTitle: crystal structure of bcpa, the major pilin subunit of2 bacillus cereus
24c3irpX_



not modelled 92.5 24
PDB header:cell adhesion
Chain: X: PDB Molecule:uro-adherence factor a;
PDBTitle: crystal structure of functional region of uafa from staphylococcus2 saprophyticus at 1.50 angstrom resolution
25d2bura1



not modelled 92.1 17
Fold:Prealbumin-like
Superfamily:Aromatic compound dioxygenase
Family:Aromatic compound dioxygenase
26c2x5pA_



not modelled 91.5 26
PDB header:protein binding
Chain: A: PDB Molecule:fibronectin binding protein;
PDBTitle: crystal structure of the streptococcus pyogenes fibronectin binding2 protein fbab-b
27c4jdzA_



not modelled 91.3 12
PDB header:cell adhesion
Chain: A: PDB Molecule:ser-asp rich fibrinogen/bone sialoprotein-binding protein
PDBTitle: structures of sdrd from staphylococcus aureus reveal the molecular2 mechanism of how the cell surface receptors recognize their ligands
28c2ww8A_



not modelled 89.6 23
PDB header:cell adhesion
Chain: A: PDB Molecule:cell wall surface anchor family protein;
PDBTitle: structure of the pilus adhesin (rrga) from streptococcus2 pneumoniae
29c3e8vA_



not modelled 87.9 21
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:possible transglutaminase-family protein;
PDBTitle: crystal structure of a possible transglutaminase-family protein2 proteolytic fragment from bacteroides fragilis
30c2qz7B_



not modelled 87.1 21
PDB header:structural genomics, unknown function
Chain: B: PDB Molecule:uncharacterized protein sco6318;
PDBTitle: the crystal structure of a homologue of telluride resistance protein2 (terd), sco6318 from streptomyces coelicolor a3(2)
31c5vg2B_



not modelled 85.0 31
PDB header:oxidoreductase
Chain: B: PDB Molecule:intradiol ring-cleavage dioxygenase;
PDBTitle: intradiol ring-cleavage dioxygenase from tetranychus urticae
32c2kxvA_



not modelled 83.4 27
PDB header:unknown function
Chain: A: PDB Molecule:tellurite resistance protein;
PDBTitle: nmr structure and calcium-binding properties of the tellurite2 resistance protein terd from klebsiella pneumoniae
33c3ibzA_



not modelled 83.2 19
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:putative tellurium resistant like protein terd;
PDBTitle: crystal structure of putative tellurium resistant like protein (terd)2 from streptomyces coelicolor a3(2)
34c4acqA_



not modelled 82.7 17
PDB header:hydrolase inhibitor
Chain: A: PDB Molecule:alpha-2-macroglobulin;
PDBTitle: alpha-2 macroglobulin
35c2qngA_



not modelled 81.4 17
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:uncharacterized protein sav2460;
PDBTitle: crystal structure of unknown function protein sav2460
36c4acqC_



not modelled 77.2 17
PDB header:hydrolase inhibitor
Chain: C: PDB Molecule:alpha-2-macroglobulin;
PDBTitle: alpha-2 macroglobulin
37c6fwvB_



not modelled 75.7 15
PDB header:unknown function
Chain: B: PDB Molecule:collagen adhesion protein;
PDBTitle: the bacillus anthracis tie protein
38c4u3sB_



not modelled 75.6 24
PDB header:protein binding
Chain: B: PDB Molecule:cellulosomal scaffoldin;
PDBTitle: crystal structure of coh3scab-xdoc_m1scaa complex: a n-terminal2 interface mutant of type ii cohesin-x-dockerin complex from3 acetivibrio cellulolyticus
39c4rtdA_



not modelled 72.2 19
PDB header:lipid binding protein
Chain: A: PDB Molecule:uncharacterized lipoprotein yfhm;
PDBTitle: escherichia coli alpha-2-macroglobulin activated by porcine elastase
40d1jhna4



not modelled 71.9 29
Fold:Concanavalin A-like lectins/glucanases
Superfamily:Concanavalin A-like lectins/glucanases
Family:Calnexin/calreticulin
41c1jhnA_



not modelled 71.6 29
PDB header:chaperone
Chain: A: PDB Molecule:calnexin;
PDBTitle: crystal structure of the lumenal domain of calnexin
42c5k39B_



not modelled 70.3 13
PDB header:structural protein
Chain: B: PDB Molecule:dockerin module from a protein of unknown function;
PDBTitle: the type ii cohesin dockerin complex from clostridium thermocellum
43c1ti2F_



not modelled 68.5 30
PDB header:oxidoreductase
Chain: F: PDB Molecule:pyrogallol hydroxytransferase small subunit;
PDBTitle: crystal structure of pyrogallol-phloroglucinol transhydroxylase from2 pelobacter acidigallici
44c4uzgA_



not modelled 66.6 20
PDB header:structural protein
Chain: A: PDB Molecule:surface protein spb1;
PDBTitle: crystal structure of group b streptococcus pilus 2b backbone protein2 sak_1440
45c3uafA_



not modelled 64.2 16
PDB header:protein binding
Chain: A: PDB Molecule:ttr-52;
PDBTitle: crystal structure of a ttr-52 mutant of c. elegans
46c4kdwA_



not modelled 63.4 20
PDB header:cell adhesion
Chain: A: PDB Molecule:antifreeze protein;
PDBTitle: crystal structure of a bacterial immunoglobulin-like domain from the2 m. primoryensis ice-binding adhesin
47c3rg0A_



not modelled 62.5 21
PDB header:chaperone
Chain: A: PDB Molecule:calreticulin;
PDBTitle: structural and functional relationships between the lectin and arm2 domains of calreticulin
48c4u48A_



not modelled 62.3 25
PDB header:hydrolase inhibitor
Chain: A: PDB Molecule:putative inner membrane lipoprotein;
PDBTitle: crystal structure of salmonella alpha-2-macroglobulin
49c3mxnB_



not modelled 61.5 40
PDB header:replication
Chain: B: PDB Molecule:recq-mediated genome instability protein 2;
PDBTitle: crystal structure of the rmi core complex
50c5hcfF_



not modelled 58.4 27
PDB header:chaperone
Chain: F: PDB Molecule:calreticulin, putative,calreticulin, putative;
PDBTitle: t. cruzi calreticulin globular domain
51c5hcaB_



not modelled 57.3 18
PDB header:sugar binding protein
Chain: B: PDB Molecule:calreticulin,calreticulin;
PDBTitle: globular domain of the entamoeba histolytica calreticulin in complex2 with glucose
52c3o0vA_



not modelled 55.1 21
PDB header:chaperone
Chain: A: PDB Molecule:calreticulin;
PDBTitle: crystal structure of the calreticulin lectin domain
53d1nqja_



not modelled 53.7 16
Fold:CUB-like
Superfamily:Collagen-binding domain
Family:Collagen-binding domain
54c4z8wA_



not modelled 49.9 24
PDB header:allergen
Chain: A: PDB Molecule:major pollen allergen pla l 1;
PDBTitle: crystal structure of the major plantain pollen allergen pla l 1
55c2h0eA_



not modelled 47.9 14
PDB header:hydrolase
Chain: A: PDB Molecule:transthyretin-like protein pucm;
PDBTitle: crystal structure of pucm in the absence of substrate
56c4q14B_



not modelled 42.5 24
PDB header:hydrolase
Chain: B: PDB Molecule:5-hydroxyisourate hydrolase;
PDBTitle: crystal structure of 5-hydroxyisourate hydrolase from brucella2 melitensis
57c3c12A_



not modelled 39.8 17
PDB header:biosynthetic protein
Chain: A: PDB Molecule:flagellar protein;
PDBTitle: crystal structure of flgd from xanthomonas campestris:2 insights into the hook capping essential for flagellar3 assembly
58c2x9yA_



not modelled 39.2 27
PDB header:cell adhesion
Chain: A: PDB Molecule:cell wall surface anchor family protein;
PDBTitle: structure of the pilus backbone (rrgb) from streptococcus2 pneumoniae
59d1kgia_



not modelled 38.1 14
Fold:Prealbumin-like
Superfamily:Transthyretin (synonym: prealbumin)
Family:Transthyretin (synonym: prealbumin)
60d1f86a_



not modelled 36.7 19
Fold:Prealbumin-like
Superfamily:Transthyretin (synonym: prealbumin)
Family:Transthyretin (synonym: prealbumin)
61d1ttaa_



not modelled 33.6 19
Fold:Prealbumin-like
Superfamily:Transthyretin (synonym: prealbumin)
Family:Transthyretin (synonym: prealbumin)
62d1ei5a2



not modelled 32.4 50
Fold:Streptavidin-like
Superfamily:D-aminopeptidase, middle and C-terminal domains
Family:D-aminopeptidase, middle and C-terminal domains
63c4e9lA_



not modelled 31.5 20
PDB header:cell adhesion
Chain: A: PDB Molecule:attaching and effacing protein, pathogenesis factor;
PDBTitle: fdec, a novel broadly conserved escherichia coli adhesin eliciting2 protection against urinary tract infections
64c2xetB_



not modelled 31.3 19
PDB header:transport protein
Chain: B: PDB Molecule:f1 capsule-anchoring protein;
PDBTitle: conserved hydrophobic clusters on the surface of the caf1a usher2 c-terminal domain are important for f1 antigen assembly
65d1tfpa_



not modelled 30.6 12
Fold:Prealbumin-like
Superfamily:Transthyretin (synonym: prealbumin)
Family:Transthyretin (synonym: prealbumin)
66c3qvaB_



not modelled 30.4 34
PDB header:hydrolase
Chain: B: PDB Molecule:transthyretin-like protein;
PDBTitle: structure of klebsiella pneumoniae 5-hydroxyisourate hydrolase
67d1oo2a_



not modelled 29.9 19
Fold:Prealbumin-like
Superfamily:Transthyretin (synonym: prealbumin)
Family:Transthyretin (synonym: prealbumin)
68c2gpzC_



not modelled 29.4 17
PDB header:hydrolase
Chain: C: PDB Molecule:transthyretin-like protein;
PDBTitle: transthyretin-like protein from salmonella dublin
69c6b6lB_



not modelled 29.3 27
PDB header:hydrolase
Chain: B: PDB Molecule:glycosyl hydrolase family 2, sugar binding domain protein;
PDBTitle: the crystal structure of glycosyl hydrolase family 2 (gh2) member from2 bacteroides cellulosilyticus dsm 14838
70c2pz4A_



not modelled 27.5 16
PDB header:cell adhesion
Chain: A: PDB Molecule:protein gbs052;
PDBTitle: crystal structure of spab (gbs52), the minor pilin in gram-positive2 pathogen streptococcus agalactiae
71c4p0dA_



not modelled 23.8 12
PDB header:structural protein
Chain: A: PDB Molecule:trypsin-resistant surface t6 protein;
PDBTitle: the t6 backbone pilin of serotype m6 streptococcus pyogenes has a2 modular three-domain structure decorated with variable loops and3 extensions
72d2qlvb1



not modelled 23.8 16
Fold:Immunoglobulin-like beta-sandwich
Superfamily:E set domains
Family:AMPK-beta glycogen binding domain-like
73c4a5wA_



not modelled 21.2 17
PDB header:immune system
Chain: A: PDB Molecule:complement c5;
PDBTitle: crystal structure of c5b6
74c4n0rB_



not modelled 19.7 20
PDB header:structural genomics, unknown function
Chain: B: PDB Molecule:putative glycoside hydrolase;
PDBTitle: crystal structure of a putative glycoside hydrolase (bvu_0362) from2 bacteroides vulgatus atcc 8482 at 1.80 a resolution
75c6czjA_



not modelled 19.0 28
PDB header:de novo protein
Chain: A: PDB Molecule:b10;
PDBTitle: structure of a redesigned beta barrel, b10
76d2f69a1



not modelled 19.0 32
Fold:open-sided beta-meander
Superfamily:Histone H3 K4-specific methyltransferase SET7/9 N-terminal domain
Family:Histone H3 K4-specific methyltransferase SET7/9 N-terminal domain
77c4cffB_



not modelled 18.0 24
PDB header:transferase
Chain: B: PDB Molecule:5'-amp-activated protein kinase subunit beta-1;
PDBTitle: structure of full length human ampk in complex with a small molecule2 activator, a thienopyridone derivative (a-769662)
78c5t0zB_



not modelled 16.9 24
PDB header:structural protein
Chain: B: PDB Molecule:lipoprotein, putative;
PDBTitle: pelc from geobacter metallireducens
79c6mr1A_



not modelled 15.6 44
PDB header:protein binding
Chain: A: PDB Molecule:carbon dioxide concentrating mechanism protein;
PDBTitle: rbcs-like subdomain of ccmm
80d1ew4a_



not modelled 15.4 24
Fold:N domain of copper amine oxidase-like
Superfamily:Frataxin/Nqo15-like
Family:Frataxin-like
81c4fe9A_



not modelled 15.3 20
PDB header:carbohydrate-binding protein
Chain: A: PDB Molecule:outer membrane protein susf;
PDBTitle: crystal structure of susf from bacteroides thetaiotaomicron
82d1cwva2



not modelled 15.1 22
Fold:Immunoglobulin-like beta-sandwich
Superfamily:Invasin/intimin cell-adhesion fragments
Family:Invasin/intimin cell-adhesion fragments
83c6hbbA_



not modelled 14.6 56
PDB header:protein binding
Chain: A: PDB Molecule:carbon dioxide concentrating mechanism protein ccmm;
PDBTitle: crystal structure of the small subunit-like domain 1 of ccmm from2 synechococcus elongatus (strain pcc 7942)
84c2kmcA_



not modelled 14.3 23
PDB header:cell adhesion
Chain: A: PDB Molecule:fermitin family homolog 1;
PDBTitle: solution structure of the n-terminal domain of kindlin-1
85c1sddB_



not modelled 14.3 26
PDB header:blood clotting
Chain: B: PDB Molecule:coagulation factor v;
PDBTitle: crystal structure of bovine factor vai
86c3cdzB_



not modelled 14.2 26
PDB header:blood clotting
Chain: B: PDB Molecule:coagulation factor viii light chain;
PDBTitle: crystal structure of human factor viii
87c6cztA_



not modelled 14.0 38
PDB header:cell adhesion
Chain: A: PDB Molecule:alginate biosynthesis protein algf;
PDBTitle: cs-rosetta determined structures of the n-terminal domain of algf from2 p. aeruginosa
88d1knva_



not modelled 13.8 15
Fold:Restriction endonuclease-like
Superfamily:Restriction endonuclease-like
Family:Cfr10I/Bse634I
89c3n6yA_



not modelled 13.7 23
PDB header:unknown function
Chain: A: PDB Molecule:immunoglobulin-like protein;
PDBTitle: crystal structure of an immunoglobulin-like protein (pa1606) from2 pseudomonas aeruginosa at 1.50 a resolution
90c6qm2A_



not modelled 12.9 44
PDB header:hydrolase
Chain: A: PDB Molecule:type-2 restriction enzyme nlaiv;
PDBTitle: nlaiv restriction endonuclease
91d1rbli_



not modelled 12.7 22
Fold:RuBisCO, small subunit
Superfamily:RuBisCO, small subunit
Family:RuBisCO, small subunit
92d2k49a2



not modelled 12.5 33
Fold:YegP-like
Superfamily:YegP-like
Family:YegP-like
93d2k8ea1



not modelled 12.4 42
Fold:YegP-like
Superfamily:YegP-like
Family:YegP-like
94c2ybvN_



not modelled 12.2 22
PDB header:lyase
Chain: N: PDB Molecule:ribulose bisphosphate carboxylase small subunit;
PDBTitle: structure of rubisco from thermosynechococcus elongatus
95d1cwva3



not modelled 11.8 24
Fold:Immunoglobulin-like beta-sandwich
Superfamily:Invasin/intimin cell-adhesion fragments
Family:Invasin/intimin cell-adhesion fragments
96c1txkA_



not modelled 11.7 41
PDB header:biosynthetic protein
Chain: A: PDB Molecule:glucans biosynthesis protein g;
PDBTitle: crystal structure of escherichia coli opgg
97d1ir1s_



not modelled 11.7 33
Fold:RuBisCO, small subunit
Superfamily:RuBisCO, small subunit
Family:RuBisCO, small subunit
98c3wmvA_



not modelled 11.7 41
PDB header:sugar binding protein
Chain: A: PDB Molecule:lectin;
PDBTitle: the structure of an anti-cancer lectin mytilec with ligand from the2 mussel mytilus galloprovincialis
99d1svdm1



not modelled 11.6 22
Fold:RuBisCO, small subunit
Superfamily:RuBisCO, small subunit
Family:RuBisCO, small subunit

Binding site prediction 

Due to computational demand, binding site predictions are not run for batch jobs

If you want to predict binding sites, please manually submit your model of choice to 3DLigandSite