Phyre Home Retrieve Phyre Job Id
Emailmdejesus@rockefeller.edu
DescriptionRVBD3122_(-)_3488086_3488556
DateThu Aug 8 16:20:30 BST 2019
Unique Job ID0713da0f4a77c6e3
SequenceVYSGCWINNQ ... Download FASTA
Job Typenormal
Job Expiry

Summary 

Top model
Image coloured by rainbow N → C terminus
Model dimensions (Å):X:12.962 Y:12.463 Z:13.788
Model (left) based on template c4klkA_
Top template information
PDB header:unknown function
Chain: A: PDB Molecule:phage-related protein duf2815;
PDBTitle: phage-related protein duf2815 from enterococcus faecalis
Confidence and coverage
Confidence: 56.2% Coverage: 5%
8 residues ( 5% of your sequence) have been modelled with 56.2% confidence by the single highest scoring template.
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Sequence analysis 

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Secondary structure and disorder prediction [Show] 

Domain analysis [Show] 

Detailed template information [Hide] 

 

#
Template Alignment Coverage3D Model Confidence
% i.d. Template Information
1c4klkA_
56.2 50
PDB header:unknown function
Chain: A: PDB Molecule:phage-related protein duf2815;
PDBTitle: phage-related protein duf2815 from enterococcus faecalis
2d1pdaa1
32.8 20
Fold:Periplasmic binding protein-like II
Superfamily:Periplasmic binding protein-like II
Family:Phosphate binding protein-like
3c2p38A_
32.4 30
PDB header:biosynthetic protein
Chain: A: PDB Molecule:protein involved in ribosomal biogenesis;
PDBTitle: crystal structure of pyrococcus abyssi protein homologue of2 saccharomyces cerevisiae nip7p
4c5gnaB_
28.6 14
PDB header:gene regulation
Chain: B: PDB Molecule:flagellar hook-associated protein 2;
PDBTitle: crystal structure of flagellin assembly related protein
5c2ypnA_
28.3 20
PDB header:transferase
Chain: A: PDB Molecule:protein (hydroxymethylbilane synthase);
PDBTitle: hydroxymethylbilane synthase
6c4jg2A_
25.8 63
PDB header:unknown function
Chain: A: PDB Molecule:phage-related protein;
PDBTitle: structure of phage-related protein from bacillus cereus atcc 10987
7c5npaA_
24.3 15
PDB header:rna binding protein
Chain: A: PDB Molecule:loquacious;
PDBTitle: solution structure of drosophila melanogaster loquacious dsrbd2
8c4auvC_
24.3 28
PDB header:apoptosis
Chain: C: PDB Molecule:breast cancer metastasis suppressor 1;
PDBTitle: crystal structure of the brms1 n-terminal region
9c4mlqA_
24.0 24
PDB header:transferase
Chain: A: PDB Molecule:porphobilinogen deaminase;
PDBTitle: crystal structure of bacillus megaterium porphobilinogen deaminase
10c4htgA_
23.6 26
PDB header:transferase/transferase inhibitor
Chain: A: PDB Molecule:porphobilinogen deaminase, chloroplastic;
PDBTitle: porphobilinogen deaminase from arabidopsis thaliana
11c3adjA_
23.4 13
PDB header:gene regulation
Chain: A: PDB Molecule:f21m12.9 protein;
PDBTitle: structure of arabidopsis hyl1 and its molecular implications for mirna2 processing
12c3eq1A_
22.9 29
PDB header:transferase
Chain: A: PDB Molecule:porphobilinogen deaminase;
PDBTitle: the crystal structure of human porphobilinogen deaminase at2 2.8a resolution
13c3b4nB_
20.0 13
PDB header:lyase
Chain: B: PDB Molecule:endo-pectate lyase;
PDBTitle: crystal structure analysis of pectate lyase peli from2 erwinia chrysanthemi
14c2xe4A_
19.2 22
PDB header:hydrolase/inhibitor
Chain: A: PDB Molecule:oligopeptidase b;
PDBTitle: structure of oligopeptidase b from leishmania major
15d1g5ga1
18.3 43
Fold:Head and neck region of the ectodomain of NDV fusion glycoprotein
Superfamily:Head and neck region of the ectodomain of NDV fusion glycoprotein
Family:Head and neck region of the ectodomain of NDV fusion glycoprotein
16c2h9xA_
17.5 32
PDB header:toxin
Chain: A: PDB Molecule:toxin cgna;
PDBTitle: nmr structure for the cgna toxin from the sea anemone2 condylactis gigantea
17d1stua_
16.6 19
Fold:dsRBD-like
Superfamily:dsRNA-binding domain-like
Family:Double-stranded RNA-binding domain (dsRBD)
18c3mawB_
15.9 43
PDB header:viral protein
Chain: B: PDB Molecule:fusion glycoprotein f0;
PDBTitle: structure of the newcastle disease virus f protein in the post-fusion2 conformation
19c3cvfA_
15.7 35
PDB header:signaling protein
Chain: A: PDB Molecule:homer protein homolog 3;
PDBTitle: crystal structure of the carboxy terminus of homer3
20c1g5gA_
15.5 43
PDB header:viral protein
Chain: A: PDB Molecule:fusion protein;
PDBTitle: fragment of fusion protein from newcastle disease virus
21c3ci9B_
not modelled 14.9 27
PDB header:transcription
Chain: B: PDB Molecule:heat shock factor-binding protein 1;
PDBTitle: crystal structure of the human hsbp1
22c2l33A_
not modelled 13.0 16
PDB header:transcription regulator
Chain: A: PDB Molecule:interleukin enhancer-binding factor 3;
PDBTitle: solution nmr structure of drbm 2 domain of interleukin enhancer-2 binding factor 3 from homo sapiens, northeast structural genomics3 consortium target hr4527e
23c2mdrA_
not modelled 12.2 17
PDB header:hydrolase
Chain: A: PDB Molecule:double-stranded rna-specific adenosine deaminase;
PDBTitle: solution structure of the third double-stranded rna-binding domain2 (dsrbd3) of human adenosine-deaminase adar1
24c6grvA_
not modelled 12.2 55
PDB header:metal binding protein
Chain: A: PDB Molecule:metallothionein;
PDBTitle: cadmium(ii) form of full-length metallothionein from pseudomonas2 fluorescens q2-87 (pflq2 mt)
25c4faoL_
not modelled 12.0 45
PDB header:signaling protein/signaling protein
Chain: L: PDB Molecule:activin receptor type-2b;
PDBTitle: specificity and structure of a high affinity activin-like 1 (alk1)2 signaling complex
26c3u1nC_
not modelled 11.7 30
PDB header:hydrolase
Chain: C: PDB Molecule:sam domain and hd domain-containing protein 1;
PDBTitle: structure of the catalytic core of human samhd1
27d2dmya1
not modelled 11.1 12
Fold:dsRBD-like
Superfamily:dsRNA-binding domain-like
Family:Double-stranded RNA-binding domain (dsRBD)
28c2dqbB_
not modelled 10.9 25
PDB header:hydrolase, dna binding protein
Chain: B: PDB Molecule:deoxyguanosinetriphosphate triphosphohydrolase, putative;
PDBTitle: crystal structure of dntp triphosphohydrolase from thermus2 thermophilus hb8, which is homologous to dgtp triphosphohydrolase
29d1zkea1
not modelled 10.7 37
Fold:ROP-like
Superfamily:HP1531-like
Family:HP1531-like
30c2lrsA_
not modelled 10.5 25
PDB header:hydrolase
Chain: A: PDB Molecule:endoribonuclease dicer homolog 1;
PDBTitle: the second dsrbd domain from a. thaliana dicer-like 1
31d2h62d1
not modelled 10.2 45
Fold:Snake toxin-like
Superfamily:Snake toxin-like
Family:Extracellular domain of cell surface receptors
32d1dv0a_
not modelled 10.1 30
Fold:RuvA C-terminal domain-like
Superfamily:UBA-like
Family:UBA domain
33d2b7va1
not modelled 10.0 15
Fold:dsRBD-like
Superfamily:dsRNA-binding domain-like
Family:Double-stranded RNA-binding domain (dsRBD)
34c4bzbB_
not modelled 9.7 39
PDB header:hydrolase
Chain: B: PDB Molecule:deoxynucleoside triphosphate triphosphohydrolase samhd1;
PDBTitle: crystal structure of the tetrameric dgtp-bound samhd12 mutant catalytic core
35c4yfmA_
not modelled 9.5 13
PDB header:hydrolase
Chain: A: PDB Molecule:beta-lactamase;
PDBTitle: class a beta-lactamase from mycobacterium abscessus
36c2ah6B_
not modelled 9.2 14
PDB header:transferase
Chain: B: PDB Molecule:bh1595, unknown conserved protein;
PDBTitle: crystal structure of a putative cobalamin adenosyltransferase (bh1595)2 from bacillus halodurans c-125 at 1.60 a resolution
37d2b7ta1
not modelled 9.0 16
Fold:dsRBD-like
Superfamily:dsRNA-binding domain-like
Family:Double-stranded RNA-binding domain (dsRBD)
38c5npgA_
not modelled 8.9 19
PDB header:rna binding protein
Chain: A: PDB Molecule:loquacious, isoform f;
PDBTitle: solution structure of drosophila melanogaster loquacious dsrbd1
39d1oqya2
not modelled 8.7 30
Fold:RuvA C-terminal domain-like
Superfamily:UBA-like
Family:UBA domain
40c2m6oA_
not modelled 8.3 19
PDB header:transcription
Chain: A: PDB Molecule:uncharacterized protein;
PDBTitle: the actinobacterial transcription factor rbpa binds to the principal2 sigma subunit of rna polymerase
41c6em5l_
not modelled 8.2 47
PDB header:ribosome
Chain: L: PDB Molecule:60s ribosomal protein l13-a;
PDBTitle: state d architectural model (nsa1-tap flag-ytm1) - visualizing the2 assembly pathway of nucleolar pre-60s ribosomes
42c6brhA_
not modelled 8.2 38
PDB header:hydrolase
Chain: A: PDB Molecule:deoxynucleoside triphosphate triphosphohydrolase samhd1;
PDBTitle: the sam domain of mouse samhd1 is critical for its activation and2 regulation
43d1nlwe_
not modelled 8.1 19
Fold:HLH-like
Superfamily:HLH, helix-loop-helix DNA-binding domain
Family:HLH, helix-loop-helix DNA-binding domain
44c6htuA_
not modelled 8.1 22
PDB header:rna binding protein
Chain: A: PDB Molecule:double-stranded rna-binding protein staufen homolog 1;
PDBTitle: structure of hstau1 dsrbd3-4 in complex with arf1 rna
45d1uhza_
not modelled 8.0 15
Fold:dsRBD-like
Superfamily:dsRNA-binding domain-like
Family:Double-stranded RNA-binding domain (dsRBD)
46d2v3za1
not modelled 7.9 29
Fold:Ribonuclease H-like motif
Superfamily:Creatinase/prolidase N-terminal domain
Family:Creatinase/prolidase N-terminal domain
47c2pgsA_
not modelled 7.7 25
PDB header:hydrolase
Chain: A: PDB Molecule:putative deoxyguanosinetriphosphate triphosphohydrolase;
PDBTitle: crystal structure of a putative deoxyguanosinetriphosphate2 triphosphohydrolase from pseudomonas syringae pv. phaseolicola 1448a
48d1a0aa_
not modelled 7.7 24
Fold:HLH-like
Superfamily:HLH, helix-loop-helix DNA-binding domain
Family:HLH, helix-loop-helix DNA-binding domain
49c6as4C_
not modelled 7.3 47
PDB header:viral protein
Chain: C: PDB Molecule:nhis acre1 anti-crispr protein;
PDBTitle: structure of a phage anti-crispr protein
50c5fcmB_
not modelled 7.3 33
PDB header:cell cycle
Chain: B: PDB Molecule:basal body protein;
PDBTitle: crbld10-n 1-70
51c2mz8A_
not modelled 7.2 31
PDB header:transcription regulator
Chain: A: PDB Molecule:sigma factor-binding protein crl;
PDBTitle: solution nmr structure of salmonella typhimurium transcriptional2 regulator protein crl
52c2ahpB_
not modelled 7.1 40
PDB header:de novo protein
Chain: B: PDB Molecule:general control protein gcn4;
PDBTitle: gcn4 leucine zipper, mutation of lys15 to epsilon-azido-lys
53d1e4qa_
not modelled 7.0 33
Fold:Defensin-like
Superfamily:Defensin-like
Family:Defensin
54c3rpjA_
not modelled 7.0 28
PDB header:transcription regulator
Chain: A: PDB Molecule:curlin genes transcriptional regulator;
PDBTitle: structure of a curlin genes transcriptional regulator protein from2 proteus mirabilis hi4320.
55d2heka1
not modelled 7.0 25
Fold:HD-domain/PDEase-like
Superfamily:HD-domain/PDEase-like
Family:HD domain
56d2dula1
not modelled 7.0 21
Fold:S-adenosyl-L-methionine-dependent methyltransferases
Superfamily:S-adenosyl-L-methionine-dependent methyltransferases
Family:TRM1-like
57c3cveC_
not modelled 7.0 29
PDB header:signaling protein
Chain: C: PDB Molecule:homer protein homolog 1;
PDBTitle: crystal structure of the carboxy terminus of homer1
58c2ahpA_
not modelled 6.9 40
PDB header:de novo protein
Chain: A: PDB Molecule:general control protein gcn4;
PDBTitle: gcn4 leucine zipper, mutation of lys15 to epsilon-azido-lys
59c3cg5A_
not modelled 6.8 14
PDB header:hydrolase
Chain: A: PDB Molecule:beta-lactamase;
PDBTitle: crystal structure of the covalent adduct formed between tb2 b-lactamase and clavulanate
60c5ao4D_
not modelled 6.7 38
PDB header:hydrolase
Chain: D: PDB Molecule:deoxynucleoside triphosphate triphosphohydrolase samhd1;
PDBTitle: crystal structure of in vitro phosphorylated human samhd1 (amino acid2 residues 115-626) bound to gtp
61c1vq0A_
not modelled 6.6 31
PDB header:chaperone
Chain: A: PDB Molecule:33 kda chaperonin;
PDBTitle: crystal structure of 33 kda chaperonin (heat shock protein 33 homolog)2 (hsp33) (tm1394) from thermotoga maritima at 2.20 a resolution
62c3pltB_
not modelled 6.6 21
PDB header:structural protein
Chain: B: PDB Molecule:sphingolipid long chain base-responsive protein lsp1;
PDBTitle: crystal structure of lsp1 from saccharomyces cerevisiae
63c4dbgB_
not modelled 6.4 16
PDB header:ligase
Chain: B: PDB Molecule:ring finger protein 31;
PDBTitle: crystal structure of hoil-1l-ubl complexed with a hoip-uba derivative
64c4eo1A_
not modelled 6.4 78
PDB header:viral protein
Chain: A: PDB Molecule:attachment protein g3p;
PDBTitle: crystal structure of the tola binding domain from the filamentous2 phage ike
65d1an2a_
not modelled 6.3 19
Fold:HLH-like
Superfamily:HLH, helix-loop-helix DNA-binding domain
Family:HLH, helix-loop-helix DNA-binding domain
66d1btea_
not modelled 6.2 45
Fold:Snake toxin-like
Superfamily:Snake toxin-like
Family:Extracellular domain of cell surface receptors
67c5cwsL_
not modelled 6.2 59
PDB header:protein transport
Chain: L: PDB Molecule:nucleoporin nic96;
PDBTitle: crystal structure of the intact chaetomium thermophilum nsp1-nup49-2 nup57 channel nucleoporin heterotrimer bound to its nic96 nuclear3 pore complex attachment site
68c5cwsF_
not modelled 6.2 59
PDB header:protein transport
Chain: F: PDB Molecule:nucleoporin nic96;
PDBTitle: crystal structure of the intact chaetomium thermophilum nsp1-nup49-2 nup57 channel nucleoporin heterotrimer bound to its nic96 nuclear3 pore complex attachment site
69c1zhcA_
not modelled 6.1 9
PDB header:unknown function
Chain: A: PDB Molecule:hypothetical protein hp1242;
PDBTitle: solution structure of hp1242 from helicobacter pylori
70c2x9aA_
not modelled 6.1 33
PDB header:viral protein
Chain: A: PDB Molecule:attachment protein g3p;
PDBTitle: crystal structure of g3p from phage if1 in complex with its2 coreceptor, the c-terminal domain of tola
71c3kowH_
not modelled 6.1 43
PDB header:metal binding protein
Chain: H: PDB Molecule:d-ornithine aminomutase s component;
PDBTitle: crystal structure of ornithine 4,5 aminomutase backsoaked complex
72c2o6iA_
not modelled 6.1 33
PDB header:hydrolase
Chain: A: PDB Molecule:hd domain protein;
PDBTitle: structure of an enterococcus faecalis hd domain phosphohydrolase
73d2o6ia1
not modelled 6.1 33
Fold:HD-domain/PDEase-like
Superfamily:HD-domain/PDEase-like
Family:HD domain
74c4a18A_
not modelled 6.0 46
PDB header:ribosome
Chain: A: PDB Molecule:ribosomal protein l37;
PDBTitle: t.thermophila 60s ribosomal subunit in complex with initiation2 factor 6. this file contains 26s rrna and proteins of molecule 1
75c5gnjI_
not modelled 6.0 24
PDB header:dna binding protein/dna
Chain: I: PDB Molecule:transcription factor myc2;
PDBTitle: structure of a transcription factor and dna complex
76d1pm4a_
not modelled 6.0 57
Fold:Superantigen (mitogen) Ypm
Superfamily:Superantigen (mitogen) Ypm
Family:Superantigen (mitogen) Ypm
77c5dv7C_
not modelled 6.0 16
PDB header:rna binding protein
Chain: C: PDB Molecule:interleukin enhancer-binding factor 3;
PDBTitle: crystal structure of nf90 tandem dsrbds with dsrna
78c3bg2A_
not modelled 5.9 17
PDB header:hydrolase
Chain: A: PDB Molecule:dgtp triphosphohydrolase;
PDBTitle: crystal structure of deoxyguanosinetriphosphate triphosphohydrolase2 from flavobacterium sp. med217
79c4u49B_
not modelled 5.9 29
PDB header:lyase
Chain: B: PDB Molecule:pectate lyase;
PDBTitle: crystal structure of pectate lyase pel3 from pectobacterium2 carotovorum with two monomers in the a.u
80c3adlA_
not modelled 5.7 19
PDB header:gene regulation/rna
Chain: A: PDB Molecule:risc-loading complex subunit tarbp2;
PDBTitle: structure of trbp2 and its molecule implications for mirna processing
81c3nrxB_
not modelled 5.7 22
PDB header:protein binding
Chain: B: PDB Molecule:protein regulator of cytokinesis 1;
PDBTitle: insights into anti-parallel microtubule crosslinking by prc1, a2 conserved non-motor microtubule binding protein
82c4bp9A_
not modelled 5.6 16
PDB header:hydrolase
Chain: A: PDB Molecule:oligopeptidasse b;
PDBTitle: oligopeptidase b from trypanosoma brucei with covalently bound2 antipain - closed form
83c6exnD_
not modelled 5.5 29
PDB header:splicing
Chain: D: PDB Molecule:pre-mrna-splicing factor cwc16;
PDBTitle: post-catalytic p complex spliceosome with 3' splice site docked
84d2nuga2
not modelled 5.5 19
Fold:dsRBD-like
Superfamily:dsRNA-binding domain-like
Family:Double-stranded RNA-binding domain (dsRBD)
85c2g2dA_
not modelled 5.4 17
PDB header:transferase
Chain: A: PDB Molecule:atp:cobalamin adenosyltransferase;
PDBTitle: crystal structure of a putative pduo-type atp:cobalamin2 adenosyltransferase from mycobacterium tuberculosis
86c3ra3B_
not modelled 5.4 41
PDB header:de novo protein
Chain: B: PDB Molecule:p2f;
PDBTitle: crystal structure of a section of a de novo design gigadalton protein2 fibre
87d1di2a_
not modelled 5.2 25
Fold:dsRBD-like
Superfamily:dsRNA-binding domain-like
Family:Double-stranded RNA-binding domain (dsRBD)
88d2sh1a_
not modelled 5.2 23
Fold:Defensin-like
Superfamily:Defensin-like
Family:Defensin
89d1rtya_
not modelled 5.1 18
Fold:Ferritin-like
Superfamily:Cobalamin adenosyltransferase-like
Family:Cobalamin adenosyltransferase
90c5fjaA_
not modelled 5.1 43
PDB header:transcription
Chain: A: PDB Molecule:dna-directed rna polymerase iii subunit rpc1;
PDBTitle: cryo-em structure of yeast rna polymerase iii at 4.7 a
91c6j05B_
not modelled 5.1 18
PDB header:transcription
Chain: B: PDB Molecule:transcriptional regulator arsr;
PDBTitle: structures of two arsr as(iii)-responsive repressors: implications for2 the mechanism of derepression

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