Phyre Home Retrieve Phyre Job Id
Emailmdejesus@rockefeller.edu
DescriptionRVBD3129_(-)_3494657_3494989
DateThu Aug 8 16:20:31 BST 2019
Unique Job ID3b501ce3b0e0aeb8
SequenceVVQGRTVLFR ... Download FASTA
Job Typenormal
Job Expiry

Summary 

Top model
Image coloured by rainbow N → C terminus
Model dimensions (Å):X:32.307 Y:51.059 Z:39.017
Model (left) based on template c3fkhB_
Top template information
PDB header:oxidoreductase
Chain: B: PDB Molecule:putative pyridoxamine 5'-phosphate oxidase;
PDBTitle: crystal structure of putative pyridoxamine 5'-phosphate oxidase2 (np_601736.1) from corynebacterium glutamicum atcc 13032 kitasato at3 2.51 a resolution
Confidence and coverage
Confidence:100.0% Coverage: 85%
93 residues ( 85% of your sequence) have been modelled with 100.0% confidence by the single highest scoring template.
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Sequence analysis 

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Domain analysis [Show] 

Detailed template information [Hide] 

 

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Template Alignment Coverage3D Model Confidence
% i.d. Template Information
1c3fkhB_



100.0 41
PDB header:oxidoreductase
Chain: B: PDB Molecule:putative pyridoxamine 5'-phosphate oxidase;
PDBTitle: crystal structure of putative pyridoxamine 5'-phosphate oxidase2 (np_601736.1) from corynebacterium glutamicum atcc 13032 kitasato at3 2.51 a resolution
2c6eciQ_



99.9 61
PDB header:fad-binding protein
Chain: Q: PDB Molecule:pyridoxamine 5'-phosphate oxidase-related, fmn-binding
PDBTitle: structure of the fad binding protein msmeg_5243 from mycobacterium2 smegmatis
3c3cp3A_



99.9 37
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:uncharacterized protein;
PDBTitle: crystal structure of conserved protein of unknown function dip18742 from corynebacterium diphtheriae
4c3u0iA_



99.9 17
PDB header:unknown function
Chain: A: PDB Molecule:probable fad-binding, putative uncharacterized protein;
PDBTitle: crystal structure of a probable fad-binding, putative uncharacterized2 protein from brucella melitensis
5d2hq9a1



99.8 18
Fold:Split barrel-like
Superfamily:FMN-binding split barrel
Family:PNP-oxidase like
6d2fg9a1



99.7 18
Fold:Split barrel-like
Superfamily:FMN-binding split barrel
Family:PNP-oxidase like
7c2htiA_



99.7 22
PDB header:fmn-binding protein
Chain: A: PDB Molecule:bh0577 protein;
PDBTitle: crystal structure of a flavin-nucleotide-binding protein (bh_0577)2 from bacillus halodurans at 2.50 a resolution
8d2htia1



99.7 22
Fold:Split barrel-like
Superfamily:FMN-binding split barrel
Family:PNP-oxidase like
9d2fura1



99.7 12
Fold:Split barrel-like
Superfamily:FMN-binding split barrel
Family:PNP-oxidase like
10c6rk0A_



99.6 14
PDB header:flavoprotein
Chain: A: PDB Molecule:uncharacterized protein;
PDBTitle: structure of the flavocytochrome anf3 from azotobacter vinelandii
11d2vpaa1



99.5 15
Fold:Split barrel-like
Superfamily:FMN-binding split barrel
Family:PNP-oxidase like
12d1rfea_



99.5 14
Fold:Split barrel-like
Superfamily:FMN-binding split barrel
Family:PNP-oxidase like
13c4ybnB_



99.4 9
PDB header:oxidoreductase
Chain: B: PDB Molecule:flavin-nucleotide-binding protein;
PDBTitle: structure of the fad and heme binding protein msmeg_4975 from2 mycobacterium smegmatis
14c4zkyB_



99.4 15
PDB header:oxidoreductase
Chain: B: PDB Molecule:pyridoxamine 5-phosphate oxidase;
PDBTitle: structure of f420 binding protein, msmeg_6526, from mycobacterium2 smegmatis
15c3db0B_



99.3 11
PDB header:oxidoreductase
Chain: B: PDB Molecule:lin2891 protein;
PDBTitle: crystal structure of putative pyridoxamine 5'-phosphate oxidase2 (np_472219.1) from listeria innocua at 2.00 a resolution
16c3ec6A_



99.2 11
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:general stress protein 26;
PDBTitle: crystal structure of the general stress protein 26 from bacillus2 anthracis str. sterne
17d2asfa1



99.2 20
Fold:Split barrel-like
Superfamily:FMN-binding split barrel
Family:PNP-oxidase like
18d2i02a1



99.1 16
Fold:Split barrel-like
Superfamily:FMN-binding split barrel
Family:PNP-oxidase like
19c3f7eB_



99.1 16
PDB header:unknown function
Chain: B: PDB Molecule:pyridoxamine 5'-phosphate oxidase-related, fmn-
PDBTitle: msmeg_3380 f420 reductase
20c2re7A_



99.1 14
PDB header:oxidoreductase
Chain: A: PDB Molecule:uncharacterized protein;
PDBTitle: crystal structure of a pyridoxamine 5'-phosphate oxidase related2 protein (psyc_0186) from psychrobacter arcticus 273-4 at 2.50 a3 resolution
21c2ol5B_



not modelled 99.0 11
PDB header:transcription regulator
Chain: B: PDB Molecule:pai 2 protein;
PDBTitle: crystal structure of a protease synthase and sporulation negative2 regulatory protein pai 2 from bacillus stearothermophilus
22c3dmbA_



not modelled 98.9 14
PDB header:oxidoreductase
Chain: A: PDB Molecule:putative general stress protein 26 with a pnp-oxidase like
PDBTitle: crystal structure of a putative general stress family protein2 (xcc2264) from xanthomonas campestris pv. campestris at 2.30 a3 resolution
23d2hq7a1



not modelled 98.9 4
Fold:Split barrel-like
Superfamily:FMN-binding split barrel
Family:PNP-oxidase like
24d2fhqa1



not modelled 98.9 13
Fold:Split barrel-like
Superfamily:FMN-binding split barrel
Family:PNP-oxidase like
25c2iabB_



not modelled 98.8 19
PDB header:unknown function
Chain: B: PDB Molecule:hypothetical protein;
PDBTitle: crystal structure of a protein with fmn-binding split barrel fold2 (np_828636.1) from streptomyces avermitilis at 2.00 a resolution
26c3u34D_



not modelled 98.7 14
PDB header:protein binding
Chain: D: PDB Molecule:general stress protein;
PDBTitle: crystal structure of the general stress fmn/fad binding protein from2 the phytopathogen xanthomonas citri
27c2qeaB_



not modelled 98.7 15
PDB header:oxidoreductase
Chain: B: PDB Molecule:putative general stress protein 26;
PDBTitle: crystal structure of a putative general stress protein 26 (jann_0955)2 from jannaschia sp. ccs1 at 2.46 a resolution
28c2ig6B_



not modelled 98.6 8
PDB header:oxidoreductase
Chain: B: PDB Molecule:nimc/nima family protein;
PDBTitle: crystal structure of a nimc/nima family protein (ca_c2569) from2 clostridium acetobutylicum at 1.80 a resolution
29d1w9aa_



not modelled 98.5 14
Fold:Split barrel-like
Superfamily:FMN-binding split barrel
Family:PNP-oxidase like
30c5escD_



not modelled 98.4 8
PDB header:oxidoreductase
Chain: D: PDB Molecule:hupz;
PDBTitle: crystal structure of group a streptococcus hupz
31c2htdB_



not modelled 98.4 18
PDB header:oxidoreductase
Chain: B: PDB Molecule:predicted flavin-nucleotide-binding protein from cog3576
PDBTitle: crystal structure of a putative pyridoxamine 5'-phosphate oxidase2 (ldb0262) from lactobacillus delbrueckii subsp. at 1.60 a resolution
32c3tgvD_



not modelled 98.4 10
PDB header:heme binding protein
Chain: D: PDB Molecule:heme-binding protein hutz;
PDBTitle: crystal structure of hutz,the heme storsge protein from vibrio2 cholerae
33d1vl7a_



not modelled 98.1 9
Fold:Split barrel-like
Superfamily:FMN-binding split barrel
Family:PNP-oxidase like
34c2ou5B_



not modelled 98.0 20
PDB header:flavoprotein
Chain: B: PDB Molecule:pyridoxamine 5'-phosphate oxidase-related, fmn-binding;
PDBTitle: crystal structure of a pyridoxamine 5'-phosphate oxidase-related fmn-2 binding protein (jann_0254) from jannaschia sp. ccs1 at 1.60 a3 resolution
35d2arza1



not modelled 97.9 11
Fold:Split barrel-like
Superfamily:FMN-binding split barrel
Family:PNP-oxidase like
36d1flma_



not modelled 97.9 12
Fold:Split barrel-like
Superfamily:FMN-binding split barrel
Family:PNP-oxidase like
37c2hhzA_



not modelled 97.8 13
PDB header:oxidoreductase
Chain: A: PDB Molecule:pyridoxamine 5'-phosphate oxidase-related;
PDBTitle: crystal structure of a pyridoxamine 5'-phosphate oxidase-related2 protein (ssuidraft_2804) from streptococcus suis 89/1591 at 2.00 a3 resolution
38c5bncB_



not modelled 97.7 7
PDB header:heme binding protein
Chain: B: PDB Molecule:heme binding protein msmeg_6519;
PDBTitle: structure of heme binding protein msmeg_6519 from mycobacterium2 smegmatis
39c1nrgA_



not modelled 97.6 16
PDB header:oxidoreductase
Chain: A: PDB Molecule:pyridoxine 5'-phosphate oxidase;
PDBTitle: structure and properties of recombinant human pyridoxine-5'-phosphate2 oxidase
40d1nrga_



not modelled 97.6 16
Fold:Split barrel-like
Superfamily:FMN-binding split barrel
Family:PNP-oxidase like
41d1ty9a_



not modelled 97.5 13
Fold:Split barrel-like
Superfamily:FMN-binding split barrel
Family:PNP-oxidase like
42d1dnla_



not modelled 97.5 17
Fold:Split barrel-like
Superfamily:FMN-binding split barrel
Family:PNP-oxidase like
43d1t9ma_



not modelled 97.3 15
Fold:Split barrel-like
Superfamily:FMN-binding split barrel
Family:PNP-oxidase like
44d2a2ja1



not modelled 97.3 13
Fold:Split barrel-like
Superfamily:FMN-binding split barrel
Family:PNP-oxidase like
45c2q9kA_



not modelled 97.2 6
PDB header:oxidoreductase
Chain: A: PDB Molecule:uncharacterized protein;
PDBTitle: crystal structure of a putative oxidoreductase (exig_1997) from2 exiguobacterium sibiricum 255-15 at 1.59 a resolution
46c2a2jA_



not modelled 97.1 13
PDB header:oxidoreductase
Chain: A: PDB Molecule:pyridoxamine 5'-phosphate oxidase;
PDBTitle: crystal structure of a putative pyridoxine 5'-phosphate oxidase2 (rv2607) from mycobacterium tuberculosis
47c3dnhB_



not modelled 97.1 10
PDB header:structural genomics, unknown function
Chain: B: PDB Molecule:uncharacterized protein atu2129;
PDBTitle: the crystal structure of the protein atu2129 (unknown function) from2 agrobacterium tumefaciens str. c58
48c3gasA_



not modelled 96.9 13
PDB header:oxidoreductase
Chain: A: PDB Molecule:heme oxygenase;
PDBTitle: crystal structure of helicobacter pylori heme oxygenase hugz2 in complex with heme
49c4hmwB_



not modelled 96.9 13
PDB header:oxidoreductase
Chain: B: PDB Molecule:pyridoxamine 5'-phosphate oxidase;
PDBTitle: crystal structure of phzg from burkholderia lata 383
50d1xhna1



not modelled 96.6 5
Fold:Split barrel-like
Superfamily:FMN-binding split barrel
Family:PNP-oxidase like
51c2i51B_



not modelled 95.3 10
PDB header:flavoprotein
Chain: B: PDB Molecule:uncharacterized conserved protein of cog5135;
PDBTitle: crystal structure of a pyridoxamine 5'-phosphate oxidase-related, fmn2 binding protein (npun_f5749) from nostoc punctiforme pcc 73102 at3 1.40 a resolution
52d1ci0a_



not modelled 95.1 8
Fold:Split barrel-like
Superfamily:FMN-binding split barrel
Family:PNP-oxidase like
53c4n7rD_



not modelled 91.2 7
PDB header:oxidoreductase/protein binding
Chain: D: PDB Molecule:genomic dna, chromosome 3, p1 clone: mxl8;
PDBTitle: crystal structure of arabidopsis glutamyl-trna reductase in complex2 with its binding protein
54d2es2a1



not modelled 28.9 23
Fold:OB-fold
Superfamily:Nucleic acid-binding proteins
Family:Cold shock DNA-binding domain-like
55c3ba3A_



not modelled 26.2 16
PDB header:oxidoreductase
Chain: A: PDB Molecule:pyridoxamine 5'-phosphate oxidase-like protein;
PDBTitle: crystal structure of pyridoxamine 5'-phosphate oxidase-like protein2 (np_783940.1) from lactobacillus plantarum at 1.55 a resolution
56c3r5wO_



not modelled 25.3 17
PDB header:oxidoreductase
Chain: O: PDB Molecule:deazaflavin-dependent nitroreductase;
PDBTitle: structure of ddn, the deazaflavin-dependent nitroreductase from2 mycobacterium tuberculosis involved in bioreductive activation of pa-3 824, with co-factor f420
57c3a0jB_



not modelled 22.3 17
PDB header:transcription
Chain: B: PDB Molecule:cold shock protein;
PDBTitle: crystal structure of cold shock protein 1 from thermus2 thermophilus hb8
58d1c9oa_



not modelled 18.3 23
Fold:OB-fold
Superfamily:Nucleic acid-binding proteins
Family:Cold shock DNA-binding domain-like
59c3r5yC_



not modelled 17.3 20
PDB header:unknown function
Chain: C: PDB Molecule:putative uncharacterized protein;
PDBTitle: structure of a deazaflavin-dependent nitroreductase from nocardia2 farcinica, with co-factor f420
60c2k5nA_



not modelled 17.1 23
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:putative cold-shock protein;
PDBTitle: solution nmr structure of the n-terminal domain of protein eca15802 from erwinia carotovora, northeast structural genomics consortium3 target ewr156a
61c1wrgA_



not modelled 14.3 16
PDB header:membrane protein
Chain: A: PDB Molecule:light-harvesting protein b-880, beta chain;
PDBTitle: light-harvesting complex 1 beta subunit from wild-type2 rhodospirillum rubrum
62c2mqhA_



not modelled 14.3 19
PDB header:dna binding protein
Chain: A: PDB Molecule:nucleic acid binding protein;
PDBTitle: solution structure of the chlamydomonas reinhardtii nab1 cold shock2 domain, csd1
63c2l55A_



not modelled 13.9 17
PDB header:metal binding protein
Chain: A: PDB Molecule:silb,silver efflux protein, mfp component of the three
PDBTitle: solution structure of the c-terminal domain of silb from cupriavidus2 metallidurans
64c4j5iH_



not modelled 13.2 26
PDB header:oxidoreductase
Chain: H: PDB Molecule:alpha-ketoglutarate-dependent taurine dioxygenase;
PDBTitle: crystal structure of an alpha-ketoglutarate-dependent taurine2 dioxygenase from mycobacterium smegmatis
65c1zeqX_



not modelled 13.1 20
PDB header:metal binding protein
Chain: X: PDB Molecule:cation efflux system protein cusf;
PDBTitle: 1.5 a structure of apo-cusf residues 6-88 from escherichia2 coli
66d1wfqa_



not modelled 11.8 19
Fold:OB-fold
Superfamily:Nucleic acid-binding proteins
Family:Cold shock DNA-binding domain-like
67c2ytxA_



not modelled 11.4 14
PDB header:rna binding protein
Chain: A: PDB Molecule:cold shock domain-containing protein e1;
PDBTitle: solution structure of the second cold-shock domain of the human2 kiaa0885 protein (unr protein)
68c2kcmA_



not modelled 11.1 14
PDB header:nucleic acid binding protein
Chain: A: PDB Molecule:cold shock domain family protein;
PDBTitle: solution nmr structure of the n-terminal ob-domain of so_1732 from2 shewanella oneidensis. northeast structural genomics consortium3 target sor210a.
69d1mjca_



not modelled 10.8 19
Fold:OB-fold
Superfamily:Nucleic acid-binding proteins
Family:Cold shock DNA-binding domain-like
70c4a4iA_



not modelled 10.7 13
PDB header:rna binding protein
Chain: A: PDB Molecule:protein lin-28 homolog b;
PDBTitle: crystal structure of the human lin28b cold shock domain
71c3camB_



not modelled 10.5 14
PDB header:gene regulation
Chain: B: PDB Molecule:cold-shock domain family protein;
PDBTitle: crystal structure of the cold shock domain protein from neisseria2 meningitidis
72d1g6pa_



not modelled 10.2 23
Fold:OB-fold
Superfamily:Nucleic acid-binding proteins
Family:Cold shock DNA-binding domain-like
73c2ytyA_



not modelled 9.6 15
PDB header:rna binding protein
Chain: A: PDB Molecule:cold shock domain-containing protein e1;
PDBTitle: solution structure of the fourth cold-shock domain of the human2 kiaa0885 protein (unr protein)
74c4k0dB_



not modelled 8.0 32
PDB header:signaling protein
Chain: B: PDB Molecule:periplasmic sensor hybrid histidine kinase;
PDBTitle: periplasmic sensor domain of sensor histidine kinase, adeh_2942
75c1n0wB_



not modelled 8.0 56
PDB header:gene regulation/antitumor protein
Chain: B: PDB Molecule:breast cancer type 2 susceptibility protein;
PDBTitle: crystal structure of a rad51-brca2 brc repeat complex
76c3qr5B_



not modelled 6.7 15
PDB header:signaling protein
Chain: B: PDB Molecule:cardiac ca2+ release channel;
PDBTitle: structure of the first domain of a cardiac ryanodine receptor mutant2 with exon 3 deleted
77c4y9iA_



not modelled 6.7 13
PDB header:oxidoreductase
Chain: A: PDB Molecule:mycobacterium tuberculosis paralogous family 11;
PDBTitle: structure of f420-h2 dependent reductase (fdr-a) msmeg_2027
78c1kjkA_



not modelled 6.6 35
PDB header:viral protein
Chain: A: PDB Molecule:integrase;
PDBTitle: solution structure of the lambda integrase amino-terminal2 domain
79d1z1ba1



not modelled 6.6 35
Fold:DNA-binding domain
Superfamily:DNA-binding domain
Family:lambda integrase N-terminal domain
80c2lssA_



not modelled 6.3 28
PDB header:rna binding protein, dna binding protein
Chain: A: PDB Molecule:cold shock-like protein;
PDBTitle: solution structure of the r. rickettsii cold shock-like protein
81c5aj1A_



not modelled 6.1 57
PDB header:structural protein
Chain: A: PDB Molecule:swi/snf-related matrix-associated actin-dependent regulator
PDBTitle: solution structure of the smarc domain
82c6et5u_



not modelled 6.0 21
PDB header:photosynthesis
Chain: U: PDB Molecule:light-harvesting protein b-1015 gamma chain;
PDBTitle: reaction centre light harvesting complex 1 from blc. virids
83c2ytvA_



not modelled 5.8 19
PDB header:rna binding protein
Chain: A: PDB Molecule:cold shock domain-containing protein e1;
PDBTitle: solution structure of the fifth cold-shock domain of the human2 kiaa0885 protein (unr protein)
84c3hrlA_



not modelled 5.6 21
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:endonuclease-like protein;
PDBTitle: crystal structure of a putative endonuclease-like protein (ngo0050)2 from neisseria gonorrhoeae
85c5o6fA_



not modelled 5.5 17
PDB header:dna binding protein
Chain: A: PDB Molecule:cold-shock protein;
PDBTitle: nmr structure of cold shock protein a from corynebacterium2 pseudotuberculosis
86c3c66C_



not modelled 5.5 40
PDB header:transferase
Chain: C: PDB Molecule:pre-mrna polyadenylation factor fip1;
PDBTitle: yeast poly(a) polymerase in complex with fip1 residues 80-105
87c3c66D_



not modelled 5.5 40
PDB header:transferase
Chain: D: PDB Molecule:pre-mrna polyadenylation factor fip1;
PDBTitle: yeast poly(a) polymerase in complex with fip1 residues 80-105
88c2oq9A_



not modelled 5.4 45
PDB header:structural protein
Chain: A: PDB Molecule:minicollagen-5;
PDBTitle: structure of the non-canonical mcol5 of hydra nematocysts
89c3mb2J_



not modelled 5.3 64
PDB header:isomerase
Chain: J: PDB Molecule:4-oxalocrotonate tautomerase family enzyme - beta subunit;
PDBTitle: kinetic and structural characterization of a heterohexamer 4-2 oxalocrotonate tautomerase from chloroflexus aurantiacus j-10-fl:3 implications for functional and structural diversity in the4 tautomerase superfamily

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