Phyre Home Retrieve Phyre Job Id
Emailmdejesus@rockefeller.edu
DescriptionRVBD3136A_(RVBD3136A)_3502942_3503274
DateThu Aug 8 16:20:32 BST 2019
Unique Job IDccf17a9fb3c91aa8
SequenceVGWEFGVLLI ... Download FASTA
Job Typenormal
Job Expiry

Summary 

Top model
Image coloured by rainbow N → C terminus
Model dimensions (Å):X:27.713 Y:44.952 Z:27.604
Model (left) based on template c6h9iB_
Top template information
PDB header:rna binding protein
Chain: B: PDB Molecule:csf5;
PDBTitle: csf5, crispr-cas type iv cas6 crrna endonuclease
Confidence and coverage
Confidence: 39.5% Coverage: 31%
34 residues ( 31% of your sequence) have been modelled with 39.5% confidence by the single highest scoring template.
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Sequence analysis 

Download FASTA version

Secondary structure and disorder prediction [Show] 

Domain analysis [Show] 

Detailed template information [Hide] 

 

#
Template Alignment Coverage3D Model Confidence
% i.d. Template Information
1c6h9iB_



39.5 26
PDB header:rna binding protein
Chain: B: PDB Molecule:csf5;
PDBTitle: csf5, crispr-cas type iv cas6 crrna endonuclease
2d1okga3



33.6 34
Fold:FKBP-like
Superfamily:FKBP-like
Family:3-mercaptopyruvate sulfurtransferase, C-terminal domain
3c5v2sA_



16.6 17
PDB header:viral protein
Chain: A: PDB Molecule:envelope glycoprotein b;
PDBTitle: crystal structure of glycoprotein b from herpes simplex virus type i
4c1nh1A_



15.1 26
PDB header:avirulence protein
Chain: A: PDB Molecule:avirulence b protein;
PDBTitle: crystal structure of the type iii effector avrb from2 pseudomonas syringae.
5d1nh1a_



15.1 26
Fold:Antivirulence factor
Superfamily:Antivirulence factor
Family:Antivirulence factor
6d1wvna1



14.9 22
Fold:Eukaryotic type KH-domain (KH-domain type I)
Superfamily:Eukaryotic type KH-domain (KH-domain type I)
Family:Eukaryotic type KH-domain (KH-domain type I)
7c3sokB_



14.3 33
PDB header:cell adhesion
Chain: B: PDB Molecule:fimbrial protein;
PDBTitle: dichelobacter nodosus pilin fima
8d1j4wa1



12.8 17
Fold:Eukaryotic type KH-domain (KH-domain type I)
Superfamily:Eukaryotic type KH-domain (KH-domain type I)
Family:Eukaryotic type KH-domain (KH-domain type I)
9d1pama1



12.6 29
Fold:Immunoglobulin-like beta-sandwich
Superfamily:E set domains
Family:E-set domains of sugar-utilizing enzymes
10d2ctea1



11.9 37
Fold:Eukaryotic type KH-domain (KH-domain type I)
Superfamily:Eukaryotic type KH-domain (KH-domain type I)
Family:Eukaryotic type KH-domain (KH-domain type I)
11c1okgA_



11.5 42
PDB header:transferase
Chain: A: PDB Molecule:possible 3-mercaptopyruvate sulfurtransferase;
PDBTitle: 3-mercaptopyruvate sulfurtransferase from leishmania major
12c4c47B_



11.5 41
PDB header:cell adhesion
Chain: B: PDB Molecule:inner membrane lipoprotein;
PDBTitle: salmonella enterica trimeric lipoprotein sadb
13c1gycA_



11.1 21
PDB header:oxidoreductase
Chain: A: PDB Molecule:laccase 2;
PDBTitle: crystal structure determination at room temperature of a laccase from2 trametes versicolor in its oxidised form containing a full complement3 of copper ions
14d1el6a_



11.1 26
Fold:Baseplate structural protein gp11
Superfamily:Baseplate structural protein gp11
Family:Baseplate structural protein gp11
15c2xlkB_



10.7 14
PDB header:hydrolase/rna
Chain: B: PDB Molecule:csy4 endoribonuclease;
PDBTitle: crystal structure of the csy4-crrna complex, orthorhombic form
16c6j0mC_



10.5 20
PDB header:protein transport
Chain: C: PDB Molecule:pvc8;
PDBTitle: cryo-em structure of an extracellular contractile injection system,2 pvc baseplate in extended state (reconstructed with c3 symmetry)
17c2wj7D_



10.4 42
PDB header:chaperone
Chain: D: PDB Molecule:alpha-crystallin b chain;
PDBTitle: human alphab crystallin
18d2ctda1



9.1 31
Fold:beta-beta-alpha zinc fingers
Superfamily:beta-beta-alpha zinc fingers
Family:Classic zinc finger, C2H2
19d1tj1a1



9.1 57
Fold:N-terminal domain of bifunctional PutA protein
Superfamily:N-terminal domain of bifunctional PutA protein
Family:N-terminal domain of bifunctional PutA protein
20c6k4fU_



8.9 38
PDB header:biosynthetic protein
Chain: U: PDB Molecule:duf1987 domain-containing protein;
PDBTitle: siac of pseudomonas aeruginosa
21c5craB_



not modelled 7.9 55
PDB header:hydrolase
Chain: B: PDB Molecule:sdea;
PDBTitle: structure of the sdea dub domain
22d2pila_



not modelled 7.9 22
Fold:Pili subunits
Superfamily:Pili subunits
Family:Pilin
23c2hh3A_



not modelled 7.8 17
PDB header:rna binding protein
Chain: A: PDB Molecule:kh-type splicing regulatory protein;
PDBTitle: solution structure of the third kh domain of ksrp
24d3bmva1



not modelled 7.7 33
Fold:Immunoglobulin-like beta-sandwich
Superfamily:E set domains
Family:E-set domains of sugar-utilizing enzymes
25c1v10A_



not modelled 7.6 28
PDB header:oxidase
Chain: A: PDB Molecule:laccase;
PDBTitle: structure of rigidoporus lignosus laccase from hemihedrally2 twinned crystals
26d2ctma1



not modelled 7.5 31
Fold:Eukaryotic type KH-domain (KH-domain type I)
Superfamily:Eukaryotic type KH-domain (KH-domain type I)
Family:Eukaryotic type KH-domain (KH-domain type I)
27c5dgoA_



not modelled 7.3 32
PDB header:cell cycle
Chain: A: PDB Molecule:cell division control protein 45 homolog;
PDBTitle: crystal structure of cell division cycle protein 45 (cdc45)
28c3kdpG_



not modelled 7.0 18
PDB header:hydrolase
Chain: G: PDB Molecule:na+/k+ atpase gamma subunit transcript variant a;
PDBTitle: crystal structure of the sodium-potassium pump
29c3kdpH_



not modelled 7.0 18
PDB header:hydrolase
Chain: H: PDB Molecule:na+/k+ atpase gamma subunit transcript variant a;
PDBTitle: crystal structure of the sodium-potassium pump
30c3lq9B_



not modelled 6.9 15
PDB header:signaling protein
Chain: B: PDB Molecule:dna-damage-inducible transcript 4 protein;
PDBTitle: crystal structure of human redd1, a hypoxia-induced regulator of mtor
31d1x4na1



not modelled 6.9 11
Fold:Eukaryotic type KH-domain (KH-domain type I)
Superfamily:Eukaryotic type KH-domain (KH-domain type I)
Family:Eukaryotic type KH-domain (KH-domain type I)
32d2nsfa2



not modelled 6.9 30
Fold:SCP-like
Superfamily:SCP-like
Family:Micothiol-dependent maleylpyruvate isomerase C-terminal domain-like
33c3hj2B_



not modelled 6.8 27
PDB header:antimicrobial protein
Chain: B: PDB Molecule:human neutrophil peptide 1;
PDBTitle: crystal structure of covalent dimer of hnp1
34c4hqjG_



not modelled 6.7 18
PDB header:hydrolase/transport protein
Chain: G: PDB Molecule:na+/k+ atpase gamma subunit transcript variant a;
PDBTitle: crystal structure of na+,k+-atpase in the na+-bound state
35c2jp3A_



not modelled 6.6 29
PDB header:transcription
Chain: A: PDB Molecule:fxyd domain-containing ion transport regulator 4;
PDBTitle: solution structure of the human fxyd4 (chif) protein in sds2 micelles
36c3qphA_



not modelled 6.5 14
PDB header:transcription
Chain: A: PDB Molecule:trmb, a global transcription regulator;
PDBTitle: the three-dimensional structure of trmb, a global transcriptional2 regulator of the hyperthermophilic archaeon pyrococcus furiosus in3 complex with sucrose
37c2m7gA_



not modelled 6.3 28
PDB header:cell adhesion, structural protein, elect
Chain: A: PDB Molecule:geopilin domain 1 protein;
PDBTitle: structure of the type iva major pilin from the electrically conductive2 bacterial nanowires of geobacter sulfurreducens
38c6nbxG_



not modelled 6.3 20
PDB header:oxidoreductase
Chain: G: PDB Molecule:nadh-quinone oxidoreductase subunit j;
PDBTitle: t.elongatus ndh (data-set 2)
39c5m73H_



not modelled 6.3 46
PDB header:rna binding protein
Chain: H: PDB Molecule:signal recognition particle subunit srp72;
PDBTitle: structure of the human srp s domain with srp72 rna-binding domain
40d2axya1



not modelled 6.2 21
Fold:Eukaryotic type KH-domain (KH-domain type I)
Superfamily:Eukaryotic type KH-domain (KH-domain type I)
Family:Eukaryotic type KH-domain (KH-domain type I)
41c4hqjE_



not modelled 6.1 18
PDB header:hydrolase/transport protein
Chain: E: PDB Molecule:na+/k+ atpase gamma subunit transcript variant a;
PDBTitle: crystal structure of na+,k+-atpase in the na+-bound state
42c2qdjA_



not modelled 6.1 18
PDB header:antitumor protein
Chain: A: PDB Molecule:retinoblastoma-associated protein;
PDBTitle: crystal structure of the retinoblastoma protein n-domain2 provides insight into tumor suppression, ligand3 interaction and holoprotein architecture
43c6rbkC_



not modelled 6.1 22
PDB header:virus like particle
Chain: C: PDB Molecule:afp8;
PDBTitle: cryo-em structure of the anti-feeding prophage (afp) baseplate in2 extended state, 3-fold symmetrised
44c2wmmA_



not modelled 6.0 11
PDB header:cell cycle
Chain: A: PDB Molecule:chromosome partition protein mukb;
PDBTitle: crystal structure of the hinge domain of mukb
45c5b0uB_



not modelled 6.0 42
PDB header:luminescent protein
Chain: B: PDB Molecule:oplophorus-luciferin 2-monooxygenase catalytic subunit;
PDBTitle: crystal structure of the mutated 19 kda protein of oplophorus2 luciferase (nanokaz)
46c2jo1A_



not modelled 5.8 24
PDB header:hydrolase regulator
Chain: A: PDB Molecule:phospholemman;
PDBTitle: structure of the na,k-atpase regulatory protein fxyd1 in2 micelles
47c5wdaL_



not modelled 5.8 33
PDB header:protein transport
Chain: L: PDB Molecule:general secretion pathway protein g;
PDBTitle: structure of the pulg pseudopilus
48d1khma_



not modelled 5.7 17
Fold:Eukaryotic type KH-domain (KH-domain type I)
Superfamily:Eukaryotic type KH-domain (KH-domain type I)
Family:Eukaryotic type KH-domain (KH-domain type I)
49d1oqwa_



not modelled 5.6 28
Fold:Pili subunits
Superfamily:Pili subunits
Family:Pilin
50c5m8bB_



not modelled 5.6 27
PDB header:hydrolase
Chain: B: PDB Molecule:alpha-l-arabinofuranosidase ii;
PDBTitle: crystal structure of alpha-l-arabinofuranosidase from lactobacillus2 brevis
51d1zzka1



not modelled 5.6 17
Fold:Eukaryotic type KH-domain (KH-domain type I)
Superfamily:Eukaryotic type KH-domain (KH-domain type I)
Family:Eukaryotic type KH-domain (KH-domain type I)
52c5xf9E_



not modelled 5.6 24
PDB header:oxidoreductase
Chain: E: PDB Molecule:nad-reducing hydrogenase;
PDBTitle: crystal structure of nad+-reducing [nife]-hydrogenase in the air-2 oxidized state
53d1y7ba2



not modelled 5.5 22
Fold:5-bladed beta-propeller
Superfamily:Arabinanase/levansucrase/invertase
Family:alpha-L-arabinanase-like
54d1cgta1



not modelled 5.4 32
Fold:Immunoglobulin-like beta-sandwich
Superfamily:E set domains
Family:E-set domains of sugar-utilizing enzymes
55c2fugA_



not modelled 5.4 24
PDB header:oxidoreductase
Chain: A: PDB Molecule:nadh-quinone oxidoreductase chain 1;
PDBTitle: crystal structure of the hydrophilic domain of respiratory complex i2 from thermus thermophilus
56c3uv0B_



not modelled 5.1 28
PDB header:protein binding
Chain: B: PDB Molecule:mutator 2, isoform b;
PDBTitle: crystal structure of the drosophila mu2 fha domain
57d1cyga1



not modelled 5.1 32
Fold:Immunoglobulin-like beta-sandwich
Superfamily:E set domains
Family:E-set domains of sugar-utilizing enzymes
58c5lc5F_



not modelled 5.1 24
PDB header:oxidoreductase
Chain: F: PDB Molecule:nadh dehydrogenase [ubiquinone] flavoprotein 1,
PDBTitle: structure of mammalian respiratory complex i, class2

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Transmembrane helix prediction 

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